Strain Fitness in Variovorax sp. SCN45 around GFF4489

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4488 and GFF4489 are separated by 98 nucleotidesGFF4489 and GFF4490 are separated by 19 nucleotides GFF4488 - Metal-binding GTPase YjiA, at 133,066 to 134,121 GFF4488 GFF4489 - 23S rRNA (cytosine(1962)-C(5))-methyltransferase (EC 2.1.1.191), at 134,220 to 135,434 GFF4489 GFF4490 - Site-specific tyrosine recombinase XerC, at 135,454 to 136,470 GFF4490 Position (kb) 134 135 136Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 133.253 kb on + strand, within GFF4488at 133.253 kb on + strand, within GFF4488at 133.253 kb on + strand, within GFF4488at 133.253 kb on + strand, within GFF4488at 133.254 kb on - strand, within GFF4488at 133.254 kb on - strand, within GFF4488at 133.254 kb on - strand, within GFF4488at 133.254 kb on - strand, within GFF4488at 133.254 kb on - strand, within GFF4488at 133.254 kb on - strand, within GFF4488at 133.254 kb on - strand, within GFF4488at 133.254 kb on - strand, within GFF4488at 133.274 kb on + strand, within GFF4488at 133.274 kb on + strand, within GFF4488at 133.274 kb on + strand, within GFF4488at 133.274 kb on + strand, within GFF4488at 133.274 kb on + strand, within GFF4488at 133.274 kb on + strand, within GFF4488at 133.274 kb on + strand, within GFF4488at 133.274 kb on + strand, within GFF4488at 133.275 kb on - strand, within GFF4488at 133.275 kb on - strand, within GFF4488at 133.275 kb on - strand, within GFF4488at 133.275 kb on - strand, within GFF4488at 133.275 kb on - strand, within GFF4488at 133.275 kb on - strand, within GFF4488at 133.275 kb on - strand, within GFF4488at 133.275 kb on - strand, within GFF4488at 133.275 kb on - strand, within GFF4488at 133.275 kb on - strand, within GFF4488at 133.340 kb on + strand, within GFF4488at 133.340 kb on + strand, within GFF4488at 133.340 kb on + strand, within GFF4488at 133.340 kb on + strand, within GFF4488at 133.340 kb on + strand, within GFF4488at 133.340 kb on + strand, within GFF4488at 133.341 kb on - strand, within GFF4488at 133.341 kb on - strand, within GFF4488at 133.341 kb on - strand, within GFF4488at 133.341 kb on - strand, within GFF4488at 133.341 kb on - strand, within GFF4488at 133.341 kb on - strand, within GFF4488at 133.757 kb on + strand, within GFF4488at 133.757 kb on + strand, within GFF4488at 133.757 kb on + strand, within GFF4488at 133.757 kb on + strand, within GFF4488at 133.757 kb on + strand, within GFF4488at 133.757 kb on + strand, within GFF4488at 133.757 kb on + strand, within GFF4488at 133.757 kb on + strand, within GFF4488at 133.757 kb on + strand, within GFF4488at 133.757 kb on + strand, within GFF4488at 133.757 kb on + strand, within GFF4488at 133.757 kb on + strand, within GFF4488at 133.757 kb on + strand, within GFF4488at 133.757 kb on + strand, within GFF4488at 133.757 kb on + strand, within GFF4488at 133.757 kb on + strand, within GFF4488at 133.758 kb on - strand, within GFF4488at 133.758 kb on - strand, within GFF4488at 133.758 kb on - strand, within GFF4488at 133.758 kb on - strand, within GFF4488at 134.186 kb on + strandat 134.186 kb on + strandat 134.187 kb on - strandat 134.187 kb on - strandat 134.187 kb on - strandat 134.187 kb on - strandat 134.187 kb on - strandat 134.257 kb on + strandat 134.258 kb on - strandat 134.258 kb on - strandat 134.258 kb on - strandat 134.258 kb on - strandat 134.258 kb on - strandat 134.258 kb on - strandat 134.258 kb on - strandat 134.323 kb on + strandat 134.323 kb on + strandat 134.324 kb on - strandat 134.324 kb on - strandat 134.464 kb on + strand, within GFF4489at 134.464 kb on + strand, within GFF4489at 134.464 kb on + strand, within GFF4489at 134.464 kb on + strand, within GFF4489at 134.464 kb on + strand, within GFF4489at 134.464 kb on + strand, within GFF4489at 134.464 kb on + strand, within GFF4489at 134.465 kb on - strand, within GFF4489at 134.465 kb on - strand, within GFF4489at 134.465 kb on - strand, within GFF4489at 134.465 kb on - strand, within GFF4489at 134.465 kb on - strand, within GFF4489at 134.604 kb on + strand, within GFF4489at 134.604 kb on + strand, within GFF4489at 134.604 kb on + strand, within GFF4489at 134.604 kb on + strand, within GFF4489at 134.605 kb on - strand, within GFF4489at 134.605 kb on - strand, within GFF4489at 134.605 kb on - strand, within GFF4489at 134.605 kb on - strand, within GFF4489at 134.755 kb on + strand, within GFF4489at 134.756 kb on - strand, within GFF4489at 134.756 kb on - strand, within GFF4489at 134.756 kb on - strand, within GFF4489at 134.756 kb on - strand, within GFF4489at 134.756 kb on - strand, within GFF4489at 134.756 kb on - strand, within GFF4489at 134.756 kb on - strand, within GFF4489at 134.839 kb on + strand, within GFF4489at 134.839 kb on + strand, within GFF4489at 134.839 kb on + strand, within GFF4489at 134.840 kb on - strand, within GFF4489at 134.840 kb on - strand, within GFF4489at 134.990 kb on - strand, within GFF4489at 135.091 kb on + strand, within GFF4489at 135.091 kb on + strand, within GFF4489at 135.091 kb on + strand, within GFF4489at 135.451 kb on + strandat 135.451 kb on + strandat 135.451 kb on + strandat 135.451 kb on + strandat 135.451 kb on + strandat 135.451 kb on + strandat 135.451 kb on + strandat 135.451 kb on + strandat 135.451 kb on + strandat 135.451 kb on + strandat 135.451 kb on + strandat 135.452 kb on - strandat 135.452 kb on - strandat 135.452 kb on - strandat 135.452 kb on - strandat 135.455 kb on + strandat 135.455 kb on + strandat 135.456 kb on - strandat 135.456 kb on - strandat 135.456 kb on - strandat 135.456 kb on - strandat 135.456 kb on - strandat 135.456 kb on - strandat 135.456 kb on - strandat 135.461 kb on + strandat 135.503 kb on + strandat 135.503 kb on + strandat 135.503 kb on + strandat 135.503 kb on + strandat 135.503 kb on + strandat 135.503 kb on + strandat 135.503 kb on + strandat 135.503 kb on + strandat 135.504 kb on - strandat 135.504 kb on - strandat 135.504 kb on - strandat 135.504 kb on - strandat 135.504 kb on - strandat 135.504 kb on - strandat 135.537 kb on + strandat 135.538 kb on - strandat 135.539 kb on + strandat 135.539 kb on + strandat 135.539 kb on + strandat 135.539 kb on + strandat 135.539 kb on + strandat 135.540 kb on - strandat 135.540 kb on - strandat 135.540 kb on - strandat 135.540 kb on - strandat 135.540 kb on - strandat 135.986 kb on + strand, within GFF4490at 135.987 kb on - strand, within GFF4490at 135.987 kb on - strand, within GFF4490at 135.987 kb on - strand, within GFF4490at 136.046 kb on + strand, within GFF4490at 136.046 kb on + strand, within GFF4490at 136.046 kb on + strand, within GFF4490at 136.046 kb on + strand, within GFF4490at 136.046 kb on + strand, within GFF4490at 136.047 kb on - strand, within GFF4490at 136.047 kb on - strand, within GFF4490at 136.172 kb on + strand, within GFF4490at 136.172 kb on + strand, within GFF4490at 136.172 kb on + strand, within GFF4490at 136.172 kb on + strand, within GFF4490at 136.173 kb on - strand, within GFF4490at 136.334 kb on + strand, within GFF4490at 136.334 kb on + strand, within GFF4490at 136.334 kb on + strand, within GFF4490

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
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133,253 + GFF4488 0.18 -0.9
133,253 + GFF4488 0.18 +0.2
133,253 + GFF4488 0.18 +1.3
133,253 + GFF4488 0.18 -0.9
133,254 - GFF4488 0.18 -2.6
133,254 - GFF4488 0.18 +0.7
133,254 - GFF4488 0.18 -0.2
133,254 - GFF4488 0.18 -0.9
133,254 - GFF4488 0.18 -0.6
133,254 - GFF4488 0.18 -0.2
133,254 - GFF4488 0.18 +0.7
133,254 - GFF4488 0.18 -0.4
133,274 + GFF4488 0.20 -0.1
133,274 + GFF4488 0.20 +0.5
133,274 + GFF4488 0.20 +0.9
133,274 + GFF4488 0.20 -0.3
133,274 + GFF4488 0.20 -0.3
133,274 + GFF4488 0.20 +0.9
133,274 + GFF4488 0.20 -0.6
133,274 + GFF4488 0.20 +0.3
133,275 - GFF4488 0.20 -1.3
133,275 - GFF4488 0.20 +1.5
133,275 - GFF4488 0.20 -1.3
133,275 - GFF4488 0.20 +2.7
133,275 - GFF4488 0.20 -0.6
133,275 - GFF4488 0.20 -0.2
133,275 - GFF4488 0.20 -0.0
133,275 - GFF4488 0.20 -0.7
133,275 - GFF4488 0.20 -0.3
133,275 - GFF4488 0.20 -0.1
133,340 + GFF4488 0.26 +0.2
133,340 + GFF4488 0.26 -0.6
133,340 + GFF4488 0.26 -1.9
133,340 + GFF4488 0.26 +0.0
133,340 + GFF4488 0.26 -0.3
133,340 + GFF4488 0.26 -0.4
133,341 - GFF4488 0.26 -0.2
133,341 - GFF4488 0.26 +1.2
133,341 - GFF4488 0.26 +0.9
133,341 - GFF4488 0.26 -0.6
133,341 - GFF4488 0.26 -0.1
133,341 - GFF4488 0.26 +0.3
133,757 + GFF4488 0.65 +0.0
133,757 + GFF4488 0.65 +1.0
133,757 + GFF4488 0.65 -0.9
133,757 + GFF4488 0.65 +0.7
133,757 + GFF4488 0.65 -0.8
133,757 + GFF4488 0.65 +1.1
133,757 + GFF4488 0.65 -0.1
133,757 + GFF4488 0.65 -0.3
133,757 + GFF4488 0.65 -0.6
133,757 + GFF4488 0.65 -1.7
133,757 + GFF4488 0.65 -1.3
133,757 + GFF4488 0.65 -0.9
133,757 + GFF4488 0.65 -1.9
133,757 + GFF4488 0.65 +0.1
133,757 + GFF4488 0.65 -0.5
133,757 + GFF4488 0.65 +0.6
133,758 - GFF4488 0.66 +0.7
133,758 - GFF4488 0.66 -1.1
133,758 - GFF4488 0.66 +0.5
133,758 - GFF4488 0.66 -0.3
134,186 + -1.7
134,186 + +0.4
134,187 - -0.2
134,187 - -0.9
134,187 - -1.5
134,187 - -0.5
134,187 - -0.5
134,257 + -0.8
134,258 - -0.4
134,258 - +0.2
134,258 - +1.7
134,258 - +0.9
134,258 - -0.9
134,258 - +0.1
134,258 - +0.7
134,323 + -0.3
134,323 + +0.6
134,324 - -0.1
134,324 - +0.6
134,464 + GFF4489 0.20 +0.5
134,464 + GFF4489 0.20 -0.2
134,464 + GFF4489 0.20 -0.1
134,464 + GFF4489 0.20 -0.9
134,464 + GFF4489 0.20 +1.7
134,464 + GFF4489 0.20 -0.3
134,464 + GFF4489 0.20 +0.3
134,465 - GFF4489 0.20 +0.4
134,465 - GFF4489 0.20 +0.7
134,465 - GFF4489 0.20 -0.3
134,465 - GFF4489 0.20 -0.0
134,465 - GFF4489 0.20 +0.1
134,604 + GFF4489 0.32 -1.6
134,604 + GFF4489 0.32 +0.1
134,604 + GFF4489 0.32 -1.1
134,604 + GFF4489 0.32 -0.3
134,605 - GFF4489 0.32 -1.9
134,605 - GFF4489 0.32 +0.7
134,605 - GFF4489 0.32 +0.0
134,605 - GFF4489 0.32 +0.7
134,755 + GFF4489 0.44 +0.1
134,756 - GFF4489 0.44 +0.1
134,756 - GFF4489 0.44 -0.6
134,756 - GFF4489 0.44 +1.1
134,756 - GFF4489 0.44 +0.9
134,756 - GFF4489 0.44 -1.8
134,756 - GFF4489 0.44 -0.6
134,756 - GFF4489 0.44 +1.2
134,839 + GFF4489 0.51 -0.0
134,839 + GFF4489 0.51 +1.0
134,839 + GFF4489 0.51 -1.7
134,840 - GFF4489 0.51 +1.3
134,840 - GFF4489 0.51 +1.2
134,990 - GFF4489 0.63 +1.7
135,091 + GFF4489 0.72 -0.8
135,091 + GFF4489 0.72 +0.3
135,091 + GFF4489 0.72 -0.0
135,451 + -0.1
135,451 + -0.8
135,451 + +0.5
135,451 + -0.1
135,451 + -1.9
135,451 + -0.0
135,451 + -0.1
135,451 + -0.2
135,451 + +0.1
135,451 + -0.5
135,451 + +0.1
135,452 - -0.5
135,452 - -0.1
135,452 - -0.1
135,452 - -0.5
135,455 + -0.5
135,455 + -0.6
135,456 - +2.1
135,456 - -2.0
135,456 - -0.3
135,456 - -0.2
135,456 - -0.1
135,456 - +0.1
135,456 - -0.3
135,461 + -0.9
135,503 + -1.4
135,503 + +0.8
135,503 + -0.6
135,503 + -0.6
135,503 + +0.3
135,503 + -1.0
135,503 + -0.7
135,503 + -2.9
135,504 - -0.6
135,504 - +0.5
135,504 - -0.4
135,504 - -0.9
135,504 - -2.6
135,504 - -0.0
135,537 + +1.3
135,538 - +0.2
135,539 + +0.1
135,539 + +0.3
135,539 + -1.1
135,539 + -1.0
135,539 + +0.1
135,540 - -1.0
135,540 - -1.1
135,540 - +0.0
135,540 - -0.9
135,540 - +0.7
135,986 + GFF4490 0.52 +0.4
135,987 - GFF4490 0.52 -1.3
135,987 - GFF4490 0.52 -0.9
135,987 - GFF4490 0.52 +0.1
136,046 + GFF4490 0.58 +0.4
136,046 + GFF4490 0.58 -0.5
136,046 + GFF4490 0.58 -0.8
136,046 + GFF4490 0.58 -1.2
136,046 + GFF4490 0.58 -3.1
136,047 - GFF4490 0.58 -0.6
136,047 - GFF4490 0.58 -2.2
136,172 + GFF4490 0.71 -0.4
136,172 + GFF4490 0.71 -0.7
136,172 + GFF4490 0.71 -1.6
136,172 + GFF4490 0.71 +0.6
136,173 - GFF4490 0.71 +0.2
136,334 + GFF4490 0.87 -0.9
136,334 + GFF4490 0.87 -0.6
136,334 + GFF4490 0.87 +1.4

Or see this region's nucleotide sequence