Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4241 and GFF4242 overlap by 4 nucleotides GFF4242 and GFF4243 are separated by 660 nucleotides GFF4243 and GFF4244 are separated by 15 nucleotides
GFF4241 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 152,875 to 155,901
GFF4241
GFF4242 - TRAP-type C4-dicarboxylate transport system, periplasmic component, at 155,898 to 156,944
GFF4242
GFF4243 - no description, at 157,605 to 157,730
GFF4243
GFF4244 - Acid phosphatase (EC 3.1.3.2), at 157,746 to 160,196
GFF4244
Position (kb) 155
156
157 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 155.861 kb on + strand at 155.861 kb on + strand at 155.862 kb on - strand at 155.862 kb on - strand at 156.268 kb on + strand, within GFF4242 at 156.268 kb on + strand, within GFF4242 at 156.268 kb on + strand, within GFF4242 at 156.268 kb on + strand, within GFF4242 at 156.268 kb on + strand, within GFF4242 at 156.269 kb on - strand, within GFF4242 at 156.269 kb on - strand, within GFF4242 at 156.269 kb on - strand, within GFF4242 at 156.269 kb on - strand, within GFF4242 at 156.269 kb on - strand, within GFF4242 at 156.383 kb on - strand, within GFF4242 at 156.383 kb on - strand, within GFF4242 at 156.383 kb on - strand, within GFF4242 at 156.383 kb on - strand, within GFF4242 at 156.508 kb on + strand, within GFF4242 at 156.509 kb on - strand, within GFF4242 at 156.514 kb on + strand, within GFF4242 at 156.514 kb on + strand, within GFF4242 at 156.514 kb on + strand, within GFF4242 at 156.514 kb on + strand, within GFF4242 at 156.514 kb on + strand, within GFF4242 at 156.514 kb on + strand, within GFF4242 at 156.514 kb on + strand, within GFF4242 at 156.514 kb on + strand, within GFF4242 at 156.514 kb on + strand, within GFF4242 at 156.514 kb on + strand, within GFF4242 at 156.514 kb on + strand, within GFF4242 at 156.514 kb on + strand, within GFF4242 at 156.514 kb on + strand, within GFF4242 at 156.514 kb on + strand, within GFF4242 at 156.514 kb on + strand, within GFF4242 at 156.514 kb on + strand, within GFF4242 at 156.514 kb on + strand, within GFF4242 at 156.514 kb on + strand, within GFF4242 at 156.515 kb on - strand, within GFF4242 at 156.515 kb on - strand, within GFF4242 at 156.515 kb on - strand, within GFF4242 at 156.515 kb on - strand, within GFF4242 at 156.515 kb on - strand, within GFF4242 at 156.515 kb on - strand, within GFF4242 at 156.515 kb on - strand, within GFF4242 at 156.515 kb on - strand, within GFF4242 at 156.515 kb on - strand, within GFF4242 at 156.515 kb on - strand, within GFF4242 at 156.515 kb on - strand, within GFF4242 at 156.515 kb on - strand, within GFF4242 at 156.515 kb on - strand, within GFF4242 at 156.515 kb on - strand, within GFF4242 at 156.515 kb on - strand, within GFF4242 at 156.539 kb on - strand, within GFF4242 at 156.566 kb on - strand, within GFF4242 at 156.566 kb on - strand, within GFF4242 at 156.649 kb on + strand, within GFF4242 at 156.770 kb on - strand, within GFF4242 at 156.829 kb on + strand, within GFF4242 at 156.829 kb on + strand, within GFF4242 at 156.830 kb on - strand, within GFF4242 at 156.830 kb on - strand, within GFF4242 at 156.830 kb on - strand, within GFF4242 at 156.830 kb on - strand, within GFF4242 at 156.934 kb on + strand at 156.935 kb on - strand at 156.935 kb on - strand at 156.935 kb on - strand at 156.935 kb on - strand at 156.935 kb on - strand at 156.944 kb on + strand at 156.944 kb on + strand at 156.944 kb on + strand at 156.944 kb on + strand at 156.944 kb on + strand at 156.945 kb on - strand at 156.945 kb on - strand at 156.945 kb on - strand at 156.974 kb on + strand at 156.974 kb on + strand at 156.974 kb on + strand at 156.974 kb on + strand at 156.974 kb on + strand at 156.974 kb on + strand at 156.974 kb on + strand at 156.975 kb on - strand at 156.975 kb on - strand at 156.975 kb on - strand at 156.975 kb on - strand at 156.985 kb on + strand at 156.985 kb on + strand at 156.986 kb on - strand at 156.986 kb on - strand at 156.986 kb on - strand at 156.986 kb on - strand at 157.037 kb on + strand at 157.037 kb on + strand at 157.037 kb on + strand at 157.038 kb on - strand at 157.038 kb on - strand at 157.038 kb on - strand at 157.315 kb on + strand at 157.407 kb on + strand at 157.407 kb on + strand at 157.408 kb on - strand at 157.408 kb on - strand at 157.413 kb on - strand at 157.414 kb on + strand at 157.479 kb on - strand at 157.493 kb on + strand at 157.504 kb on + strand at 157.505 kb on - strand at 157.505 kb on - strand at 157.505 kb on - strand at 157.505 kb on - strand at 157.509 kb on - strand at 157.516 kb on - strand at 157.539 kb on - strand at 157.723 kb on + strand at 157.724 kb on - strand at 157.724 kb on - strand at 157.741 kb on + strand at 157.741 kb on + strand at 157.742 kb on - strand at 157.742 kb on - strand at 157.742 kb on - strand at 157.742 kb on - strand at 157.742 kb on - strand at 157.743 kb on + strand at 157.743 kb on + strand at 157.744 kb on - strand at 157.744 kb on - strand at 157.744 kb on - strand at 157.744 kb on - strand at 157.745 kb on + strand at 157.745 kb on + strand at 157.745 kb on + strand at 157.745 kb on + strand at 157.745 kb on + strand at 157.745 kb on + strand at 157.745 kb on + strand at 157.746 kb on - strand at 157.746 kb on - strand at 157.746 kb on - strand at 157.746 kb on - strand at 157.746 kb on - strand at 157.746 kb on - strand at 157.746 kb on - strand at 157.775 kb on + strand at 157.775 kb on + strand at 157.775 kb on + strand at 157.775 kb on + strand at 157.776 kb on - strand at 157.776 kb on - strand at 157.776 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL remove 155,861 + -2.3 155,861 + -0.4 155,862 - -0.6 155,862 - +0.1 156,268 + GFF4242 0.35 -0.5 156,268 + GFF4242 0.35 +0.9 156,268 + GFF4242 0.35 -0.9 156,268 + GFF4242 0.35 +1.1 156,268 + GFF4242 0.35 -0.3 156,269 - GFF4242 0.35 -1.0 156,269 - GFF4242 0.35 +0.7 156,269 - GFF4242 0.35 -0.8 156,269 - GFF4242 0.35 -1.5 156,269 - GFF4242 0.35 +1.5 156,383 - GFF4242 0.46 -0.9 156,383 - GFF4242 0.46 +0.0 156,383 - GFF4242 0.46 +0.3 156,383 - GFF4242 0.46 +0.5 156,508 + GFF4242 0.58 -0.9 156,509 - GFF4242 0.58 -1.6 156,514 + GFF4242 0.59 -0.2 156,514 + GFF4242 0.59 -0.3 156,514 + GFF4242 0.59 +0.5 156,514 + GFF4242 0.59 -2.2 156,514 + GFF4242 0.59 -0.8 156,514 + GFF4242 0.59 -0.5 156,514 + GFF4242 0.59 +1.4 156,514 + GFF4242 0.59 +1.3 156,514 + GFF4242 0.59 -1.0 156,514 + GFF4242 0.59 -0.1 156,514 + GFF4242 0.59 -0.3 156,514 + GFF4242 0.59 +1.9 156,514 + GFF4242 0.59 +0.7 156,514 + GFF4242 0.59 -0.2 156,514 + GFF4242 0.59 +0.3 156,514 + GFF4242 0.59 -1.3 156,514 + GFF4242 0.59 +1.2 156,514 + GFF4242 0.59 +0.1 156,515 - GFF4242 0.59 +0.9 156,515 - GFF4242 0.59 +0.8 156,515 - GFF4242 0.59 +0.3 156,515 - GFF4242 0.59 -0.5 156,515 - GFF4242 0.59 +0.4 156,515 - GFF4242 0.59 -0.6 156,515 - GFF4242 0.59 -0.5 156,515 - GFF4242 0.59 -0.2 156,515 - GFF4242 0.59 +0.5 156,515 - GFF4242 0.59 -0.3 156,515 - GFF4242 0.59 +1.1 156,515 - GFF4242 0.59 +0.8 156,515 - GFF4242 0.59 -0.0 156,515 - GFF4242 0.59 -1.3 156,515 - GFF4242 0.59 -0.2 156,539 - GFF4242 0.61 +0.3 156,566 - GFF4242 0.64 -1.5 156,566 - GFF4242 0.64 +0.5 156,649 + GFF4242 0.72 -0.1 156,770 - GFF4242 0.83 -0.3 156,829 + GFF4242 0.89 +0.7 156,829 + GFF4242 0.89 -0.2 156,830 - GFF4242 0.89 -0.4 156,830 - GFF4242 0.89 -0.3 156,830 - GFF4242 0.89 +1.5 156,830 - GFF4242 0.89 -0.3 156,934 + +0.1 156,935 - +0.2 156,935 - -0.4 156,935 - -0.3 156,935 - +0.2 156,935 - +0.9 156,944 + +1.9 156,944 + +0.1 156,944 + -0.8 156,944 + +0.2 156,944 + -1.1 156,945 - +0.7 156,945 - +0.0 156,945 - +0.5 156,974 + -2.3 156,974 + -1.9 156,974 + -0.1 156,974 + -0.6 156,974 + +0.5 156,974 + -0.9 156,974 + -0.3 156,975 - +1.0 156,975 - -1.6 156,975 - -1.3 156,975 - +1.0 156,985 + -0.3 156,985 + -1.6 156,986 - +0.4 156,986 - +0.4 156,986 - -0.9 156,986 - -0.0 157,037 + +0.4 157,037 + +0.0 157,037 + -0.6 157,038 - -0.5 157,038 - -0.2 157,038 - +0.1 157,315 + -0.1 157,407 + -0.5 157,407 + -0.2 157,408 - -0.5 157,408 - +0.8 157,413 - -0.8 157,414 + +0.5 157,479 - +0.1 157,493 + -1.3 157,504 + -0.1 157,505 - +1.0 157,505 - -1.5 157,505 - -1.5 157,505 - +0.3 157,509 - -0.4 157,516 - +0.9 157,539 - -1.3 157,723 + +3.3 157,724 - +0.8 157,724 - +2.3 157,741 + -1.5 157,741 + -0.5 157,742 - -0.9 157,742 - -0.1 157,742 - -1.3 157,742 - +0.8 157,742 - +0.7 157,743 + -0.7 157,743 + +0.1 157,744 - +0.1 157,744 - +0.7 157,744 - -1.0 157,744 - +0.2 157,745 + -0.1 157,745 + -0.4 157,745 + -1.8 157,745 + -0.2 157,745 + -1.0 157,745 + -0.5 157,745 + -1.3 157,746 - +1.1 157,746 - -0.2 157,746 - -1.3 157,746 - -0.3 157,746 - -0.1 157,746 - -0.3 157,746 - -0.4 157,775 + -0.6 157,775 + +0.7 157,775 + -1.7 157,775 + +0.7 157,776 - +0.3 157,776 - -1.2 157,776 - -1.4
Or see this region's nucleotide sequence