Strain Fitness in Variovorax sp. SCN45 around GFF3904

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
104,661	+				-0.9
104,661	+				+0.8
104,661	+				+1.0
104,662	-				-0.8
104,662	-				+0.8
104,662	-				-0.6
104,662	-				+0.4
104,662	-				-1.8
104,662	-				+0.5
105,112	-		GFF3903	0.53	-0.1
105,228	+		GFF3903	0.65	-0.2
105,228	+		GFF3903	0.65	-0.2
105,229	-		GFF3903	0.65	-2.0
105,229	-		GFF3903	0.65	-1.0
105,229	-		GFF3903	0.65	-0.4
105,421	+		GFF3903	0.84	+0.4
105,421	+		GFF3903	0.84	-2.5
105,421	+		GFF3903	0.84	-0.3
105,421	+		GFF3903	0.84	-0.2
105,421	+		GFF3903	0.84	+0.8
105,422	-		GFF3903	0.84	-0.3
105,422	-		GFF3903	0.84	-0.0
105,422	-		GFF3903	0.84	-0.2
105,422	-		GFF3903	0.84	-0.2
105,486	+				-1.2
105,487	-				-0.1
105,487	-				+0.4
105,591	+				+0.2
105,961	+		GFF3904	0.60	-0.4
105,961	+		GFF3904	0.60	-1.5
105,962	-		GFF3904	0.60	-0.4
106,186	+				-0.6
106,186	+				+0.9
106,186	+				-0.9
106,187	-				-1.1
106,187	-				+0.6
106,187	-				-0.3
106,187	-				-0.5
106,187	-				-0.9
106,187	-				-1.7
106,192	+				-2.5
106,281	+				-2.1
106,281	+				-0.5
106,281	+				+0.3
106,282	-				+0.4
106,420	-				-1.2
106,467	+				-0.4
106,971	+		GFF3905	0.27	-0.7
107,115	+		GFF3905	0.33	-0.7
107,116	-		GFF3905	0.33	+0.4