Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3434 and GFF3435 are separated by 1 nucleotides GFF3435 and GFF3436 are separated by 67 nucleotides GFF3436 and GFF3437 are separated by 127 nucleotides
GFF3434 - Organic hydroperoxide resistance protein, at 257,523 to 257,936
GFF3434
GFF3435 - predicted integral membrane protein, at 257,938 to 258,396
GFF3435
GFF3436 - Transcriptional regulator, LysR family, at 258,464 to 259,432
GFF3436
GFF3437 - putative membrane protein, at 259,560 to 260,903
GFF3437
Position (kb) 258
259
260 Strain fitness (log2 ratio) -2
-1
0
1
2 at 257.544 kb on + strand at 257.544 kb on + strand at 257.545 kb on - strand at 257.793 kb on + strand, within GFF3434 at 257.793 kb on + strand, within GFF3434 at 257.793 kb on + strand, within GFF3434 at 257.794 kb on - strand, within GFF3434 at 257.794 kb on - strand, within GFF3434 at 257.794 kb on - strand, within GFF3434 at 257.886 kb on + strand, within GFF3434 at 257.887 kb on - strand, within GFF3434 at 257.887 kb on - strand, within GFF3434 at 257.887 kb on - strand, within GFF3434 at 258.098 kb on + strand, within GFF3435 at 258.098 kb on + strand, within GFF3435 at 258.098 kb on + strand, within GFF3435 at 258.098 kb on + strand, within GFF3435 at 258.098 kb on + strand, within GFF3435 at 258.099 kb on - strand, within GFF3435 at 258.099 kb on - strand, within GFF3435 at 258.104 kb on + strand, within GFF3435 at 258.104 kb on + strand, within GFF3435 at 258.104 kb on + strand, within GFF3435 at 258.104 kb on + strand, within GFF3435 at 258.104 kb on + strand, within GFF3435 at 258.104 kb on + strand, within GFF3435 at 258.104 kb on + strand, within GFF3435 at 258.390 kb on - strand at 258.390 kb on - strand at 258.390 kb on - strand at 258.390 kb on - strand at 258.390 kb on - strand at 258.390 kb on - strand at 258.529 kb on - strand at 258.708 kb on + strand, within GFF3436 at 258.708 kb on + strand, within GFF3436 at 259.119 kb on + strand, within GFF3436 at 259.119 kb on + strand, within GFF3436 at 259.120 kb on - strand, within GFF3436 at 259.221 kb on + strand, within GFF3436 at 259.221 kb on + strand, within GFF3436 at 259.222 kb on - strand, within GFF3436 at 259.399 kb on - strand at 259.399 kb on - strand at 259.483 kb on - strand at 259.509 kb on + strand at 259.509 kb on + strand at 260.055 kb on + strand, within GFF3437 at 260.055 kb on + strand, within GFF3437 at 260.055 kb on + strand, within GFF3437 at 260.055 kb on + strand, within GFF3437 at 260.056 kb on - strand, within GFF3437 at 260.056 kb on - strand, within GFF3437 at 260.056 kb on - strand, within GFF3437 at 260.097 kb on + strand, within GFF3437 at 260.097 kb on + strand, within GFF3437 at 260.098 kb on - strand, within GFF3437 at 260.098 kb on - strand, within GFF3437 at 260.098 kb on - strand, within GFF3437 at 260.098 kb on - strand, within GFF3437 at 260.098 kb on - strand, within GFF3437 at 260.328 kb on + strand, within GFF3437 at 260.329 kb on - strand, within GFF3437 at 260.329 kb on - strand, within GFF3437 at 260.370 kb on + strand, within GFF3437
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL remove 257,544 + -1.6 257,544 + -0.2 257,545 - -0.6 257,793 + GFF3434 0.65 +0.2 257,793 + GFF3434 0.65 -0.3 257,793 + GFF3434 0.65 -1.9 257,794 - GFF3434 0.65 +0.9 257,794 - GFF3434 0.65 -1.0 257,794 - GFF3434 0.65 -1.0 257,886 + GFF3434 0.88 -0.3 257,887 - GFF3434 0.88 +0.5 257,887 - GFF3434 0.88 +1.2 257,887 - GFF3434 0.88 +1.4 258,098 + GFF3435 0.35 -1.4 258,098 + GFF3435 0.35 -0.4 258,098 + GFF3435 0.35 +1.5 258,098 + GFF3435 0.35 +0.9 258,098 + GFF3435 0.35 +2.2 258,099 - GFF3435 0.35 -0.2 258,099 - GFF3435 0.35 -0.2 258,104 + GFF3435 0.36 -0.5 258,104 + GFF3435 0.36 -1.8 258,104 + GFF3435 0.36 -0.1 258,104 + GFF3435 0.36 +0.4 258,104 + GFF3435 0.36 -0.5 258,104 + GFF3435 0.36 -0.8 258,104 + GFF3435 0.36 +1.0 258,390 - +0.6 258,390 - -0.2 258,390 - +0.1 258,390 - +0.2 258,390 - +0.4 258,390 - -0.7 258,529 - -1.0 258,708 + GFF3436 0.25 +0.9 258,708 + GFF3436 0.25 +0.1 259,119 + GFF3436 0.68 -0.6 259,119 + GFF3436 0.68 +0.2 259,120 - GFF3436 0.68 +0.2 259,221 + GFF3436 0.78 +1.0 259,221 + GFF3436 0.78 -0.5 259,222 - GFF3436 0.78 +0.5 259,399 - -0.3 259,399 - -0.8 259,483 - -0.8 259,509 + -0.4 259,509 + +0.1 260,055 + GFF3437 0.37 -0.1 260,055 + GFF3437 0.37 -1.1 260,055 + GFF3437 0.37 +0.5 260,055 + GFF3437 0.37 -0.1 260,056 - GFF3437 0.37 +0.0 260,056 - GFF3437 0.37 +0.5 260,056 - GFF3437 0.37 -1.2 260,097 + GFF3437 0.40 +0.2 260,097 + GFF3437 0.40 -1.0 260,098 - GFF3437 0.40 -0.3 260,098 - GFF3437 0.40 -0.4 260,098 - GFF3437 0.40 +0.3 260,098 - GFF3437 0.40 +0.2 260,098 - GFF3437 0.40 -0.4 260,328 + GFF3437 0.57 -1.8 260,329 - GFF3437 0.57 -0.3 260,329 - GFF3437 0.57 -1.0 260,370 + GFF3437 0.60 -0.6
Or see this region's nucleotide sequence