Strain Fitness in Variovorax sp. SCN45 around GFF3232

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3229 and GFF3230 are separated by 100 nucleotidesGFF3230 and GFF3231 overlap by 4 nucleotidesGFF3231 and GFF3232 overlap by 4 nucleotidesGFF3232 and GFF3233 are separated by 116 nucleotidesGFF3233 and GFF3234 are separated by 1 nucleotides GFF3229 - hypothetical protein, at 49,729 to 50,208 GFF3229 GFF3230 - no description, at 50,309 to 50,578 GFF3230 GFF3231 - hypothetical protein, at 50,575 to 51,186 GFF3231 GFF3232 - Phage lysozyme R (EC 3.2.1.17), at 51,183 to 51,758 GFF3232 GFF3233 - hypothetical protein, at 51,875 to 52,627 GFF3233 GFF3234 - no description, at 52,629 to 52,748 GFF3234 Position (kb) 51 52Strain fitness (log2 ratio) -2 -1 0 1at 50.242 kb on + strandat 50.242 kb on + strandat 50.749 kb on + strand, within GFF3231at 50.948 kb on + strand, within GFF3231at 50.948 kb on + strand, within GFF3231at 50.948 kb on + strand, within GFF3231at 50.948 kb on + strand, within GFF3231at 50.949 kb on + strand, within GFF3231at 50.949 kb on - strand, within GFF3231at 50.949 kb on - strand, within GFF3231at 50.949 kb on - strand, within GFF3231at 51.011 kb on + strand, within GFF3231at 51.011 kb on + strand, within GFF3231at 51.289 kb on + strand, within GFF3232at 51.289 kb on + strand, within GFF3232at 51.290 kb on - strand, within GFF3232at 51.325 kb on + strand, within GFF3232at 51.326 kb on - strand, within GFF3232at 51.409 kb on + strand, within GFF3232at 51.409 kb on + strand, within GFF3232at 51.409 kb on + strand, within GFF3232at 51.410 kb on - strand, within GFF3232at 51.410 kb on - strand, within GFF3232at 51.410 kb on - strand, within GFF3232at 51.410 kb on - strand, within GFF3232at 51.424 kb on + strand, within GFF3232at 51.424 kb on + strand, within GFF3232at 51.424 kb on + strand, within GFF3232at 51.424 kb on + strand, within GFF3232at 51.425 kb on - strand, within GFF3232at 51.433 kb on + strand, within GFF3232at 51.433 kb on + strand, within GFF3232at 51.483 kb on + strand, within GFF3232at 51.484 kb on + strand, within GFF3232at 51.484 kb on + strand, within GFF3232at 51.484 kb on + strand, within GFF3232at 51.484 kb on + strand, within GFF3232at 51.485 kb on - strand, within GFF3232

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
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50,242 + -0.0
50,242 + -1.0
50,749 + GFF3231 0.28 -0.2
50,948 + GFF3231 0.61 -0.9
50,948 + GFF3231 0.61 +0.7
50,948 + GFF3231 0.61 -0.5
50,948 + GFF3231 0.61 +0.6
50,949 + GFF3231 0.61 -0.1
50,949 - GFF3231 0.61 -0.8
50,949 - GFF3231 0.61 -2.1
50,949 - GFF3231 0.61 +0.0
51,011 + GFF3231 0.71 -2.5
51,011 + GFF3231 0.71 -0.2
51,289 + GFF3232 0.18 -0.5
51,289 + GFF3232 0.18 -0.5
51,290 - GFF3232 0.19 -0.3
51,325 + GFF3232 0.25 +0.5
51,326 - GFF3232 0.25 +0.8
51,409 + GFF3232 0.39 -0.5
51,409 + GFF3232 0.39 -0.7
51,409 + GFF3232 0.39 +0.6
51,410 - GFF3232 0.39 -0.0
51,410 - GFF3232 0.39 -0.6
51,410 - GFF3232 0.39 -0.1
51,410 - GFF3232 0.39 -1.0
51,424 + GFF3232 0.42 -0.4
51,424 + GFF3232 0.42 +0.2
51,424 + GFF3232 0.42 -0.0
51,424 + GFF3232 0.42 -0.4
51,425 - GFF3232 0.42 -2.0
51,433 + GFF3232 0.43 -1.8
51,433 + GFF3232 0.43 -1.0
51,483 + GFF3232 0.52 +0.1
51,484 + GFF3232 0.52 -1.0
51,484 + GFF3232 0.52 -0.7
51,484 + GFF3232 0.52 -0.2
51,484 + GFF3232 0.52 -1.3
51,485 - GFF3232 0.52 -0.4

Or see this region's nucleotide sequence