Strain Fitness in Variovorax sp. SCN45 around GFF3194

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
10,054	+		GFF3193	0.10	+0.2
10,054	+		GFF3193	0.10	-0.8
10,054	+		GFF3193	0.10	-1.0
10,054	+		GFF3193	0.10	+0.4
10,075	+		GFF3193	0.13	+0.2
10,076	-		GFF3193	0.13	-1.2
10,141	+		GFF3193	0.22	+0.2
10,141	+		GFF3193	0.22	+0.2
10,142	-		GFF3193	0.22	+0.1
10,142	-		GFF3193	0.22	-1.3
10,142	-		GFF3193	0.22	-0.7
10,142	-		GFF3193	0.22	-0.5
10,163	+		GFF3193	0.25	+1.6
10,202	-		GFF3193	0.30	+0.2
10,246	+		GFF3193	0.36	-0.4
10,383	+		GFF3193	0.54	+1.8
10,383	+		GFF3193	0.54	-0.2
10,384	-		GFF3193	0.54	-0.3
10,415	-		GFF3193	0.59	+1.1
10,437	-		GFF3193	0.61	-0.2
10,437	-		GFF3193	0.61	-0.4
10,462	+		GFF3193	0.65	-1.2
10,463	-		GFF3193	0.65	-0.7
10,538	-		GFF3193	0.75	-0.4
10,538	-		GFF3193	0.75	-0.2
10,541	+		GFF3193	0.75	+0.8
10,541	+		GFF3193	0.75	-1.5
10,541	+		GFF3193	0.75	-0.9
10,542	-		GFF3193	0.76	-0.7
10,542	-		GFF3193	0.76	-0.3
10,542	-		GFF3193	0.76	+2.0
10,641	+		GFF3193	0.89	-0.6
10,641	+		GFF3193	0.89	-0.4
10,642	-		GFF3193	0.89	-0.0
10,642	-		GFF3193	0.89	-0.2
10,663	+				-0.3
10,669	+				-0.3
10,669	+				+1.1
10,669	+				-0.3
10,670	-				+0.4
10,746	+				-0.2
10,746	+				-0.5
10,746	+				+0.3
10,928	+				+0.0
10,929	-				-0.1
10,938	+				-0.2
10,976	+				-1.3
10,978	+				-0.8
10,978	+				-0.9
10,978	+				+0.0
10,978	+				-0.2
10,979	-				+1.3
10,979	-				-0.1
10,979	-				-0.5
10,979	-				-0.3
11,017	+				-0.4
11,018	-				-0.8
11,018	-				-0.1
11,018	-				-1.4
11,079	+				-0.7
11,079	+				+0.2
11,080	-				+1.4
11,080	-				+1.0
11,084	+		GFF3194	0.10	+0.5
11,084	+		GFF3194	0.10	-1.0
11,135	-		GFF3194	0.18	-0.1
11,141	+		GFF3194	0.19	-0.2
11,141	+		GFF3194	0.19	+0.2
11,141	+		GFF3194	0.19	+0.2
11,141	+		GFF3194	0.19	+0.6
11,161	-		GFF3194	0.23	+0.5
11,445	+		GFF3194	0.69	-1.9
11,445	+		GFF3194	0.69	+0.6
11,446	-		GFF3194	0.69	+0.1
11,446	-		GFF3194	0.69	+0.9
11,514	+		GFF3194	0.80	+0.7
11,514	+		GFF3194	0.80	-0.3
11,514	+		GFF3194	0.80	-1.2
11,516	+		GFF3194	0.80	+0.2
11,517	-		GFF3194	0.80	-0.6
11,517	-		GFF3194	0.80	-1.5
11,517	-		GFF3194	0.80	-0.3
11,554	+		GFF3194	0.86	-0.2
11,558	+		GFF3194	0.87	+0.7
11,558	+		GFF3194	0.87	+1.5
11,558	+		GFF3194	0.87	+0.4
11,558	+		GFF3194	0.87	+0.6
11,558	+		GFF3194	0.87	-0.2
11,558	+		GFF3194	0.87	-0.2
11,559	-		GFF3194	0.87	+0.0
11,559	-		GFF3194	0.87	-0.5
11,559	-		GFF3194	0.87	-0.3
11,559	-		GFF3194	0.87	-0.5
11,681	+				-0.1
11,681	+				-0.6
11,681	+				-0.9
11,682	-				-0.9
11,682	-				+2.2
11,814	+				-0.3
11,815	-				+0.2
11,815	-				-0.6
11,885	+		GFF3195	0.13	+0.2
11,913	+		GFF3195	0.14	-1.0
11,914	-		GFF3195	0.14	+0.3
11,914	-		GFF3195	0.14	-0.2
11,914	-		GFF3195	0.14	-1.4
11,914	-		GFF3195	0.14	-0.7
11,914	-		GFF3195	0.14	-1.0
11,928	+		GFF3195	0.15	-0.4
11,950	+		GFF3195	0.16	+0.3
11,950	+		GFF3195	0.16	-0.4
11,950	+		GFF3195	0.16	-0.3
11,951	-		GFF3195	0.16	+1.4
11,951	-		GFF3195	0.16	+0.4
11,951	-		GFF3195	0.16	+0.4
11,951	-		GFF3195	0.16	-0.2
11,951	-		GFF3195	0.16	-1.3
12,056	-		GFF3195	0.21	+2.1
12,056	-		GFF3195	0.21	-0.8
12,094	-		GFF3195	0.23	+0.3
12,094	-		GFF3195	0.23	+0.0
12,168	-		GFF3195	0.27	-0.5
12,212	+		GFF3195	0.29	-0.4
12,212	+		GFF3195	0.29	+0.4
12,212	+		GFF3195	0.29	-0.6
12,213	-		GFF3195	0.29	-1.9
12,213	-		GFF3195	0.29	-1.4
12,230	+		GFF3195	0.30	-0.4
12,231	-		GFF3195	0.30	+0.1
12,231	-		GFF3195	0.30	-1.4
12,231	-		GFF3195	0.30	+0.6
12,295	+		GFF3195	0.33	+0.3
12,295	+		GFF3195	0.33	+0.5
12,296	-		GFF3195	0.33	-0.5
12,296	-		GFF3195	0.33	+0.2
12,322	+		GFF3195	0.35	-0.5
12,380	+		GFF3195	0.38	+1.2
12,380	+		GFF3195	0.38	+1.8
12,380	+		GFF3195	0.38	+0.7
12,381	-		GFF3195	0.38	+0.8
12,424	-		GFF3195	0.40	+1.0
12,598	+		GFF3195	0.49	-1.6
12,598	+		GFF3195	0.49	-0.6
12,599	-		GFF3195	0.49	-0.5
12,599	-		GFF3195	0.49	-0.2