Strain Fitness in Variovorax sp. SCN45 around GFF3174

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3172 and GFF3173 are separated by 32 nucleotidesGFF3173 and GFF3174 are separated by 106 nucleotidesGFF3174 and GFF3175 are separated by 59 nucleotides GFF3172 - Glycosidases, at 612,988 to 613,320 GFF3172 GFF3173 - Transcriptional regulator, IclR family, at 613,353 to 614,159 GFF3173 GFF3174 - Oxidoreductase, GMC family, at 614,266 to 615,906 GFF3174 GFF3175 - Uncharacterized MFS-type transporter, at 615,966 to 617,279 GFF3175 Position (kb) 614 615 616Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 613.318 kb on + strandat 613.318 kb on + strandat 613.318 kb on + strandat 613.318 kb on + strandat 613.318 kb on + strandat 613.318 kb on + strandat 613.319 kb on - strandat 613.319 kb on - strandat 613.319 kb on - strandat 613.319 kb on - strandat 613.541 kb on - strand, within GFF3173at 613.765 kb on + strand, within GFF3173at 613.765 kb on + strand, within GFF3173at 613.765 kb on + strand, within GFF3173at 613.766 kb on - strand, within GFF3173at 614.287 kb on + strandat 614.287 kb on + strandat 614.287 kb on + strandat 614.287 kb on + strandat 614.288 kb on - strandat 614.288 kb on - strandat 614.288 kb on - strandat 614.446 kb on + strand, within GFF3174at 614.447 kb on - strand, within GFF3174at 614.501 kb on - strand, within GFF3174at 614.555 kb on - strand, within GFF3174at 614.555 kb on - strand, within GFF3174at 614.555 kb on - strand, within GFF3174at 614.555 kb on - strand, within GFF3174at 614.555 kb on - strand, within GFF3174at 614.578 kb on + strand, within GFF3174at 614.578 kb on + strand, within GFF3174at 614.578 kb on + strand, within GFF3174at 614.579 kb on - strand, within GFF3174at 614.579 kb on - strand, within GFF3174at 614.579 kb on - strand, within GFF3174at 614.618 kb on - strand, within GFF3174at 614.618 kb on - strand, within GFF3174at 614.618 kb on - strand, within GFF3174at 614.818 kb on + strand, within GFF3174at 614.818 kb on + strand, within GFF3174at 614.821 kb on + strand, within GFF3174at 614.821 kb on + strand, within GFF3174at 614.822 kb on - strand, within GFF3174at 614.869 kb on + strand, within GFF3174at 614.869 kb on + strand, within GFF3174at 614.971 kb on + strand, within GFF3174at 614.971 kb on + strand, within GFF3174at 614.972 kb on - strand, within GFF3174at 615.162 kb on - strand, within GFF3174at 615.162 kb on - strand, within GFF3174at 615.412 kb on - strand, within GFF3174at 615.517 kb on + strand, within GFF3174at 615.517 kb on + strand, within GFF3174at 615.517 kb on + strand, within GFF3174at 615.518 kb on - strand, within GFF3174at 615.518 kb on - strand, within GFF3174at 615.605 kb on - strand, within GFF3174at 616.038 kb on + strandat 616.038 kb on + strandat 616.039 kb on - strandat 616.039 kb on - strandat 616.039 kb on - strandat 616.089 kb on + strandat 616.089 kb on + strandat 616.090 kb on - strandat 616.131 kb on + strand, within GFF3175at 616.131 kb on + strand, within GFF3175at 616.383 kb on + strand, within GFF3175at 616.416 kb on + strand, within GFF3175at 616.416 kb on + strand, within GFF3175at 616.416 kb on + strand, within GFF3175at 616.416 kb on + strand, within GFF3175at 616.416 kb on + strand, within GFF3175at 616.572 kb on + strand, within GFF3175at 616.572 kb on + strand, within GFF3175at 616.572 kb on + strand, within GFF3175at 616.572 kb on + strand, within GFF3175at 616.572 kb on + strand, within GFF3175at 616.572 kb on + strand, within GFF3175at 616.572 kb on + strand, within GFF3175at 616.572 kb on + strand, within GFF3175at 616.573 kb on - strand, within GFF3175at 616.573 kb on - strand, within GFF3175at 616.573 kb on - strand, within GFF3175at 616.573 kb on - strand, within GFF3175at 616.573 kb on - strand, within GFF3175at 616.752 kb on + strand, within GFF3175at 616.752 kb on + strand, within GFF3175at 616.753 kb on - strand, within GFF3175at 616.881 kb on + strand, within GFF3175at 616.881 kb on + strand, within GFF3175at 616.881 kb on + strand, within GFF3175at 616.881 kb on + strand, within GFF3175at 616.881 kb on + strand, within GFF3175at 616.881 kb on + strand, within GFF3175at 616.881 kb on + strand, within GFF3175at 616.881 kb on + strand, within GFF3175at 616.882 kb on - strand, within GFF3175at 616.882 kb on - strand, within GFF3175at 616.882 kb on - strand, within GFF3175at 616.882 kb on - strand, within GFF3175at 616.882 kb on - strand, within GFF3175at 616.882 kb on - strand, within GFF3175at 616.882 kb on - strand, within GFF3175

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
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613,318 + -0.7
613,318 + -0.5
613,318 + +0.1
613,318 + +0.5
613,318 + -0.5
613,318 + -0.2
613,319 - -0.6
613,319 - -0.4
613,319 - -0.6
613,319 - -1.4
613,541 - GFF3173 0.23 +0.3
613,765 + GFF3173 0.51 +1.2
613,765 + GFF3173 0.51 +0.3
613,765 + GFF3173 0.51 -0.6
613,766 - GFF3173 0.51 +1.1
614,287 + +0.3
614,287 + -0.6
614,287 + -0.8
614,287 + -0.7
614,288 - -0.1
614,288 - -0.1
614,288 - +0.9
614,446 + GFF3174 0.11 +0.4
614,447 - GFF3174 0.11 -1.3
614,501 - GFF3174 0.14 -2.0
614,555 - GFF3174 0.18 -0.3
614,555 - GFF3174 0.18 -1.1
614,555 - GFF3174 0.18 -0.9
614,555 - GFF3174 0.18 -2.0
614,555 - GFF3174 0.18 -0.5
614,578 + GFF3174 0.19 -0.3
614,578 + GFF3174 0.19 +0.5
614,578 + GFF3174 0.19 -0.8
614,579 - GFF3174 0.19 -0.7
614,579 - GFF3174 0.19 -2.7
614,579 - GFF3174 0.19 -1.5
614,618 - GFF3174 0.21 -0.9
614,618 - GFF3174 0.21 +0.6
614,618 - GFF3174 0.21 -0.5
614,818 + GFF3174 0.34 -0.7
614,818 + GFF3174 0.34 -0.5
614,821 + GFF3174 0.34 -1.5
614,821 + GFF3174 0.34 -0.5
614,822 - GFF3174 0.34 -0.4
614,869 + GFF3174 0.37 +0.5
614,869 + GFF3174 0.37 -0.7
614,971 + GFF3174 0.43 +0.8
614,971 + GFF3174 0.43 -0.1
614,972 - GFF3174 0.43 -0.5
615,162 - GFF3174 0.55 +0.6
615,162 - GFF3174 0.55 -0.5
615,412 - GFF3174 0.70 -0.7
615,517 + GFF3174 0.76 -2.8
615,517 + GFF3174 0.76 +0.2
615,517 + GFF3174 0.76 +0.5
615,518 - GFF3174 0.76 -1.8
615,518 - GFF3174 0.76 -0.7
615,605 - GFF3174 0.82 +0.6
616,038 + +0.5
616,038 + -0.1
616,039 - +0.5
616,039 - +0.2
616,039 - -0.5
616,089 + -0.6
616,089 + -1.6
616,090 - +0.7
616,131 + GFF3175 0.13 -0.6
616,131 + GFF3175 0.13 +0.5
616,383 + GFF3175 0.32 +2.6
616,416 + GFF3175 0.34 -0.4
616,416 + GFF3175 0.34 -0.2
616,416 + GFF3175 0.34 +0.8
616,416 + GFF3175 0.34 -2.1
616,416 + GFF3175 0.34 -0.4
616,572 + GFF3175 0.46 +3.3
616,572 + GFF3175 0.46 -0.8
616,572 + GFF3175 0.46 -1.6
616,572 + GFF3175 0.46 -0.0
616,572 + GFF3175 0.46 -0.0
616,572 + GFF3175 0.46 +0.2
616,572 + GFF3175 0.46 +1.6
616,572 + GFF3175 0.46 +1.3
616,573 - GFF3175 0.46 +1.0
616,573 - GFF3175 0.46 +0.1
616,573 - GFF3175 0.46 +1.6
616,573 - GFF3175 0.46 -3.2
616,573 - GFF3175 0.46 -0.4
616,752 + GFF3175 0.60 +0.3
616,752 + GFF3175 0.60 -0.7
616,753 - GFF3175 0.60 -0.6
616,881 + GFF3175 0.70 -0.4
616,881 + GFF3175 0.70 -2.4
616,881 + GFF3175 0.70 -0.3
616,881 + GFF3175 0.70 +0.6
616,881 + GFF3175 0.70 -1.0
616,881 + GFF3175 0.70 +0.1
616,881 + GFF3175 0.70 -0.6
616,881 + GFF3175 0.70 +1.1
616,882 - GFF3175 0.70 -0.4
616,882 - GFF3175 0.70 +0.1
616,882 - GFF3175 0.70 +0.6
616,882 - GFF3175 0.70 -2.6
616,882 - GFF3175 0.70 -0.9
616,882 - GFF3175 0.70 +0.7
616,882 - GFF3175 0.70 +0.0

Or see this region's nucleotide sequence