Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3122 and GFF3123 are separated by 39 nucleotides GFF3123 and GFF3124 are separated by 232 nucleotides GFF3124 and GFF3125 are separated by 4 nucleotides GFF3125 and GFF3126 are separated by 63 nucleotides GFF3126 and GFF3127 are separated by 149 nucleotides
GFF3122 - ATP/GTP-binding protein, at 549,914 to 551,791
GFF3122
GFF3123 - no description, at 551,831 to 552,103
GFF3123
GFF3124 - no description, at 552,336 to 552,674
GFF3124
GFF3125 - no description, at 552,679 to 553,125
GFF3125
GFF3126 - no description, at 553,189 to 553,476
GFF3126
GFF3127 - no description, at 553,626 to 554,162
GFF3127
Position (kb) 552
553
554 Strain fitness (log2 ratio) -2
-1
0
1
2 at 551.708 kb on + strand at 551.708 kb on + strand at 551.714 kb on + strand at 551.714 kb on + strand at 551.741 kb on + strand at 551.741 kb on + strand at 551.742 kb on - strand at 551.790 kb on - strand at 552.088 kb on + strand at 552.127 kb on - strand at 552.161 kb on + strand at 552.253 kb on + strand at 552.253 kb on + strand at 552.253 kb on + strand at 552.358 kb on - strand at 552.699 kb on - strand at 552.881 kb on + strand, within GFF3125 at 552.920 kb on + strand, within GFF3125 at 552.921 kb on - strand, within GFF3125 at 552.921 kb on - strand, within GFF3125 at 552.921 kb on - strand, within GFF3125 at 552.939 kb on - strand, within GFF3125 at 553.279 kb on - strand, within GFF3126 at 553.365 kb on - strand, within GFF3126 at 553.502 kb on + strand at 553.502 kb on + strand at 553.503 kb on - strand at 553.503 kb on - strand at 553.503 kb on - strand at 553.503 kb on - strand at 553.503 kb on - strand at 553.503 kb on - strand at 553.503 kb on - strand at 553.503 kb on - strand at 553.618 kb on + strand at 553.657 kb on + strand at 553.657 kb on + strand at 553.657 kb on + strand at 553.658 kb on - strand at 553.658 kb on - strand at 553.658 kb on - strand at 553.678 kb on + strand at 553.678 kb on + strand at 553.679 kb on - strand at 553.679 kb on - strand at 553.679 kb on - strand at 553.680 kb on + strand, within GFF3127 at 553.680 kb on + strand, within GFF3127 at 553.680 kb on + strand, within GFF3127 at 553.758 kb on + strand, within GFF3127 at 553.758 kb on + strand, within GFF3127 at 553.783 kb on + strand, within GFF3127 at 553.843 kb on - strand, within GFF3127 at 553.843 kb on - strand, within GFF3127 at 553.876 kb on + strand, within GFF3127 at 553.877 kb on - strand, within GFF3127 at 553.916 kb on + strand, within GFF3127 at 553.945 kb on - strand, within GFF3127
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL remove 551,708 + +0.6 551,708 + -0.8 551,714 + -0.4 551,714 + +0.6 551,741 + -1.2 551,741 + -0.2 551,742 - +0.2 551,790 - +0.2 552,088 + -0.9 552,127 - -0.7 552,161 + +0.4 552,253 + -0.9 552,253 + -0.6 552,253 + +2.2 552,358 - -0.8 552,699 - +1.3 552,881 + GFF3125 0.45 -0.9 552,920 + GFF3125 0.54 -0.5 552,921 - GFF3125 0.54 +0.0 552,921 - GFF3125 0.54 -0.8 552,921 - GFF3125 0.54 -1.2 552,939 - GFF3125 0.58 -0.5 553,279 - GFF3126 0.31 +1.8 553,365 - GFF3126 0.61 -0.2 553,502 + +1.0 553,502 + -0.5 553,503 - -2.6 553,503 - +0.3 553,503 - -0.2 553,503 - -0.4 553,503 - -0.8 553,503 - +1.5 553,503 - -0.9 553,503 - -1.1 553,618 + +0.6 553,657 + +0.3 553,657 + -0.4 553,657 + +0.6 553,658 - +0.1 553,658 - -2.1 553,658 - -0.7 553,678 + -0.3 553,678 + -0.5 553,679 - +2.2 553,679 - +0.4 553,679 - +0.9 553,680 + GFF3127 0.10 +0.6 553,680 + GFF3127 0.10 +0.2 553,680 + GFF3127 0.10 -0.2 553,758 + GFF3127 0.25 -0.1 553,758 + GFF3127 0.25 -0.9 553,783 + GFF3127 0.29 +0.9 553,843 - GFF3127 0.40 +0.0 553,843 - GFF3127 0.40 +0.6 553,876 + GFF3127 0.47 -0.4 553,877 - GFF3127 0.47 +0.6 553,916 + GFF3127 0.54 -0.6 553,945 - GFF3127 0.59 +0.2
Or see this region's nucleotide sequence