Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3071 and GFF3072 overlap by 16 nucleotides GFF3072 and GFF3073 are separated by 50 nucleotides GFF3073 and GFF3074 are separated by 9 nucleotides GFF3074 and GFF3075 are separated by 16 nucleotides
GFF3071 - ADP-ribose pyrophosphatase of COG1058 family (EC 3.6.1.13), at 504,266 to 505,078
GFF3071
GFF3072 - Putative transmembrane protein, at 505,063 to 505,953
GFF3072
GFF3073 - Fatty acid hydroxylase family (carotene hydroxylase/sterol desaturase), at 506,004 to 506,978
GFF3073
GFF3074 - Putative polysaccharide deacetylase, at 506,988 to 507,773
GFF3074
GFF3075 - Surface antigen, at 507,790 to 508,740
GFF3075
Position (kb) 506
507 Strain fitness (log2 ratio) -2
-1
0
1
2 at 505.196 kb on + strand, within GFF3072 at 505.196 kb on + strand, within GFF3072 at 505.196 kb on + strand, within GFF3072 at 505.196 kb on + strand, within GFF3072 at 505.197 kb on - strand, within GFF3072 at 505.197 kb on - strand, within GFF3072 at 505.197 kb on - strand, within GFF3072 at 505.197 kb on - strand, within GFF3072 at 505.197 kb on - strand, within GFF3072 at 505.197 kb on - strand, within GFF3072 at 505.238 kb on + strand, within GFF3072 at 505.238 kb on + strand, within GFF3072 at 505.238 kb on + strand, within GFF3072 at 505.238 kb on + strand, within GFF3072 at 505.238 kb on + strand, within GFF3072 at 505.238 kb on + strand, within GFF3072 at 505.238 kb on + strand, within GFF3072 at 505.238 kb on + strand, within GFF3072 at 505.238 kb on + strand, within GFF3072 at 505.239 kb on - strand, within GFF3072 at 505.239 kb on - strand, within GFF3072 at 505.239 kb on - strand, within GFF3072 at 505.239 kb on - strand, within GFF3072 at 505.239 kb on - strand, within GFF3072 at 505.239 kb on - strand, within GFF3072 at 505.239 kb on - strand, within GFF3072 at 505.239 kb on - strand, within GFF3072 at 505.239 kb on - strand, within GFF3072 at 505.239 kb on - strand, within GFF3072 at 505.239 kb on - strand, within GFF3072 at 505.328 kb on + strand, within GFF3072 at 505.329 kb on - strand, within GFF3072 at 505.830 kb on - strand, within GFF3072 at 505.830 kb on - strand, within GFF3072 at 505.836 kb on - strand, within GFF3072 at 505.913 kb on + strand at 505.914 kb on - strand at 505.914 kb on - strand at 506.065 kb on + strand at 506.539 kb on + strand, within GFF3073 at 506.566 kb on + strand, within GFF3073 at 506.566 kb on + strand, within GFF3073 at 506.567 kb on - strand, within GFF3073 at 506.734 kb on + strand, within GFF3073 at 506.734 kb on + strand, within GFF3073 at 506.735 kb on - strand, within GFF3073 at 507.016 kb on + strand at 507.016 kb on + strand at 507.251 kb on - strand, within GFF3074 at 507.251 kb on - strand, within GFF3074 at 507.251 kb on - strand, within GFF3074 at 507.251 kb on - strand, within GFF3074 at 507.251 kb on - strand, within GFF3074 at 507.251 kb on - strand, within GFF3074 at 507.251 kb on - strand, within GFF3074 at 507.251 kb on - strand, within GFF3074 at 507.257 kb on - strand, within GFF3074 at 507.316 kb on + strand, within GFF3074 at 507.385 kb on + strand, within GFF3074 at 507.487 kb on + strand, within GFF3074 at 507.488 kb on - strand, within GFF3074 at 507.499 kb on + strand, within GFF3074 at 507.499 kb on + strand, within GFF3074 at 507.500 kb on - strand, within GFF3074 at 507.500 kb on - strand, within GFF3074 at 507.500 kb on - strand, within GFF3074 at 507.500 kb on - strand, within GFF3074 at 507.500 kb on - strand, within GFF3074 at 507.500 kb on - strand, within GFF3074 at 507.500 kb on - strand, within GFF3074 at 507.500 kb on - strand, within GFF3074 at 507.590 kb on + strand, within GFF3074 at 507.590 kb on + strand, within GFF3074 at 507.691 kb on + strand, within GFF3074 at 507.691 kb on + strand, within GFF3074 at 507.691 kb on + strand, within GFF3074 at 507.692 kb on - strand, within GFF3074 at 507.692 kb on - strand, within GFF3074 at 507.692 kb on - strand, within GFF3074 at 507.692 kb on - strand, within GFF3074 at 507.692 kb on - strand, within GFF3074 at 507.692 kb on - strand, within GFF3074 at 507.791 kb on + strand at 507.791 kb on + strand at 507.792 kb on - strand at 507.792 kb on - strand at 507.917 kb on + strand, within GFF3075 at 507.917 kb on + strand, within GFF3075 at 507.917 kb on + strand, within GFF3075 at 507.917 kb on + strand, within GFF3075 at 507.917 kb on + strand, within GFF3075 at 507.917 kb on + strand, within GFF3075 at 507.917 kb on + strand, within GFF3075 at 507.917 kb on + strand, within GFF3075 at 507.917 kb on + strand, within GFF3075 at 507.918 kb on - strand, within GFF3075 at 507.918 kb on - strand, within GFF3075 at 507.918 kb on - strand, within GFF3075 at 507.918 kb on - strand, within GFF3075 at 507.918 kb on - strand, within GFF3075 at 507.918 kb on - strand, within GFF3075 at 507.974 kb on + strand, within GFF3075 at 507.974 kb on + strand, within GFF3075 at 507.974 kb on + strand, within GFF3075 at 507.974 kb on + strand, within GFF3075 at 507.974 kb on + strand, within GFF3075 at 507.974 kb on + strand, within GFF3075 at 507.974 kb on + strand, within GFF3075 at 507.974 kb on + strand, within GFF3075 at 507.974 kb on + strand, within GFF3075 at 507.974 kb on + strand, within GFF3075 at 507.975 kb on - strand, within GFF3075 at 507.975 kb on - strand, within GFF3075 at 507.975 kb on - strand, within GFF3075 at 507.975 kb on - strand, within GFF3075 at 507.975 kb on - strand, within GFF3075 at 507.975 kb on - strand, within GFF3075
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL remove 505,196 + GFF3072 0.15 +0.3 505,196 + GFF3072 0.15 -0.2 505,196 + GFF3072 0.15 +2.0 505,196 + GFF3072 0.15 +0.1 505,197 - GFF3072 0.15 -0.5 505,197 - GFF3072 0.15 -0.1 505,197 - GFF3072 0.15 +0.6 505,197 - GFF3072 0.15 +0.4 505,197 - GFF3072 0.15 +1.2 505,197 - GFF3072 0.15 +0.1 505,238 + GFF3072 0.20 -0.5 505,238 + GFF3072 0.20 -0.4 505,238 + GFF3072 0.20 -1.0 505,238 + GFF3072 0.20 -1.0 505,238 + GFF3072 0.20 +0.4 505,238 + GFF3072 0.20 +0.5 505,238 + GFF3072 0.20 +0.3 505,238 + GFF3072 0.20 -0.6 505,238 + GFF3072 0.20 -1.8 505,239 - GFF3072 0.20 +0.5 505,239 - GFF3072 0.20 -0.3 505,239 - GFF3072 0.20 -0.6 505,239 - GFF3072 0.20 -1.2 505,239 - GFF3072 0.20 -0.2 505,239 - GFF3072 0.20 -0.7 505,239 - GFF3072 0.20 +0.2 505,239 - GFF3072 0.20 -1.8 505,239 - GFF3072 0.20 -0.3 505,239 - GFF3072 0.20 -1.3 505,239 - GFF3072 0.20 -1.2 505,328 + GFF3072 0.30 +0.1 505,329 - GFF3072 0.30 +0.3 505,830 - GFF3072 0.86 +2.3 505,830 - GFF3072 0.86 -0.7 505,836 - GFF3072 0.87 +0.4 505,913 + -0.3 505,914 - +0.7 505,914 - +0.8 506,065 + +1.6 506,539 + GFF3073 0.55 -0.5 506,566 + GFF3073 0.58 -0.8 506,566 + GFF3073 0.58 -0.3 506,567 - GFF3073 0.58 -0.6 506,734 + GFF3073 0.75 +0.5 506,734 + GFF3073 0.75 +0.4 506,735 - GFF3073 0.75 -1.3 507,016 + -1.1 507,016 + +0.5 507,251 - GFF3074 0.33 +0.3 507,251 - GFF3074 0.33 -0.4 507,251 - GFF3074 0.33 -0.3 507,251 - GFF3074 0.33 +0.5 507,251 - GFF3074 0.33 +1.6 507,251 - GFF3074 0.33 +0.1 507,251 - GFF3074 0.33 +0.2 507,251 - GFF3074 0.33 -0.8 507,257 - GFF3074 0.34 -0.8 507,316 + GFF3074 0.42 -1.3 507,385 + GFF3074 0.51 -0.4 507,487 + GFF3074 0.63 +0.0 507,488 - GFF3074 0.64 +0.6 507,499 + GFF3074 0.65 -0.5 507,499 + GFF3074 0.65 -0.8 507,500 - GFF3074 0.65 +2.0 507,500 - GFF3074 0.65 -0.7 507,500 - GFF3074 0.65 +0.8 507,500 - GFF3074 0.65 -1.0 507,500 - GFF3074 0.65 -0.2 507,500 - GFF3074 0.65 -0.4 507,500 - GFF3074 0.65 +0.6 507,500 - GFF3074 0.65 -0.9 507,590 + GFF3074 0.77 -0.1 507,590 + GFF3074 0.77 -0.7 507,691 + GFF3074 0.89 -0.5 507,691 + GFF3074 0.89 -0.7 507,691 + GFF3074 0.89 +0.2 507,692 - GFF3074 0.90 -0.5 507,692 - GFF3074 0.90 -1.0 507,692 - GFF3074 0.90 +0.5 507,692 - GFF3074 0.90 +0.1 507,692 - GFF3074 0.90 -0.3 507,692 - GFF3074 0.90 +1.0 507,791 + +0.2 507,791 + -0.3 507,792 - -0.9 507,792 - -2.3 507,917 + GFF3075 0.13 -0.2 507,917 + GFF3075 0.13 -0.0 507,917 + GFF3075 0.13 +0.2 507,917 + GFF3075 0.13 +1.0 507,917 + GFF3075 0.13 +1.6 507,917 + GFF3075 0.13 -0.3 507,917 + GFF3075 0.13 +0.2 507,917 + GFF3075 0.13 -0.4 507,917 + GFF3075 0.13 -1.6 507,918 - GFF3075 0.13 +0.3 507,918 - GFF3075 0.13 -0.3 507,918 - GFF3075 0.13 -0.7 507,918 - GFF3075 0.13 +1.1 507,918 - GFF3075 0.13 +1.2 507,918 - GFF3075 0.13 -0.8 507,974 + GFF3075 0.19 -0.4 507,974 + GFF3075 0.19 -1.3 507,974 + GFF3075 0.19 -0.2 507,974 + GFF3075 0.19 -0.2 507,974 + GFF3075 0.19 +1.2 507,974 + GFF3075 0.19 +0.0 507,974 + GFF3075 0.19 -0.9 507,974 + GFF3075 0.19 +0.3 507,974 + GFF3075 0.19 -1.0 507,974 + GFF3075 0.19 -0.0 507,975 - GFF3075 0.19 -0.4 507,975 - GFF3075 0.19 +0.3 507,975 - GFF3075 0.19 +0.2 507,975 - GFF3075 0.19 +0.7 507,975 - GFF3075 0.19 +0.3 507,975 - GFF3075 0.19 -0.5
Or see this region's nucleotide sequence