Strain Fitness in Variovorax sp. SCN45 around GFF2854

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2852 and GFF2853 are separated by 184 nucleotidesGFF2853 and GFF2854 are separated by 220 nucleotidesGFF2854 and GFF2855 overlap by 4 nucleotidesGFF2855 and GFF2856 are separated by 38 nucleotides GFF2852 - Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8), at 274,774 to 276,696 GFF2852 GFF2853 - DNA-binding protein HU-beta, at 276,881 to 277,153 GFF2853 GFF2854 - D-malate dehydrogenase [decarboxylating] (EC 1.1.1.83), at 277,374 to 278,459 GFF2854 GFF2855 - Putative hydrolase or acyltransferase, at 278,456 to 279,400 GFF2855 GFF2856 - Transcriptional regulator, LysR family, at 279,439 to 280,398 GFF2856 Position (kb) 277 278 279Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 276.429 kb on + strand, within GFF2852at 276.429 kb on + strand, within GFF2852at 276.429 kb on + strand, within GFF2852at 276.429 kb on + strand, within GFF2852at 276.429 kb on + strand, within GFF2852at 276.429 kb on + strand, within GFF2852at 276.430 kb on - strand, within GFF2852at 276.430 kb on - strand, within GFF2852at 276.430 kb on - strand, within GFF2852at 276.430 kb on - strand, within GFF2852at 276.430 kb on - strand, within GFF2852at 276.430 kb on - strand, within GFF2852at 276.430 kb on - strand, within GFF2852at 276.446 kb on + strand, within GFF2852at 276.446 kb on + strand, within GFF2852at 276.447 kb on - strand, within GFF2852at 276.447 kb on - strand, within GFF2852at 276.447 kb on - strand, within GFF2852at 276.447 kb on - strand, within GFF2852at 276.603 kb on - strandat 276.603 kb on - strandat 276.734 kb on + strandat 276.734 kb on + strandat 276.874 kb on + strandat 276.874 kb on + strandat 276.874 kb on + strandat 276.875 kb on - strandat 276.875 kb on - strandat 276.882 kb on + strandat 276.882 kb on + strandat 276.882 kb on + strandat 276.882 kb on + strandat 276.882 kb on + strandat 276.883 kb on - strandat 276.883 kb on - strandat 276.947 kb on - strand, within GFF2853at 276.998 kb on + strand, within GFF2853at 276.999 kb on - strand, within GFF2853at 276.999 kb on - strand, within GFF2853at 276.999 kb on - strand, within GFF2853at 277.054 kb on + strand, within GFF2853at 277.054 kb on + strand, within GFF2853at 277.055 kb on - strand, within GFF2853at 277.167 kb on - strandat 277.167 kb on - strandat 277.272 kb on + strandat 277.272 kb on + strandat 277.272 kb on + strandat 277.272 kb on + strandat 277.272 kb on + strandat 277.272 kb on + strandat 277.273 kb on - strandat 277.273 kb on - strandat 277.273 kb on - strandat 277.273 kb on - strandat 277.273 kb on - strandat 277.273 kb on - strandat 277.273 kb on - strandat 277.273 kb on - strandat 277.273 kb on - strandat 277.273 kb on - strandat 277.273 kb on - strandat 277.299 kb on + strandat 277.299 kb on + strandat 277.299 kb on + strandat 277.300 kb on - strandat 277.300 kb on - strandat 277.300 kb on - strandat 277.340 kb on - strandat 277.340 kb on - strandat 277.811 kb on - strand, within GFF2854at 278.005 kb on + strand, within GFF2854at 278.005 kb on + strand, within GFF2854at 278.005 kb on + strand, within GFF2854at 278.005 kb on + strand, within GFF2854at 278.005 kb on + strand, within GFF2854at 278.005 kb on + strand, within GFF2854at 278.005 kb on + strand, within GFF2854at 278.006 kb on - strand, within GFF2854at 278.006 kb on - strand, within GFF2854at 278.006 kb on - strand, within GFF2854at 278.006 kb on - strand, within GFF2854at 278.006 kb on - strand, within GFF2854at 278.006 kb on - strand, within GFF2854at 278.006 kb on - strand, within GFF2854at 278.029 kb on + strand, within GFF2854at 278.029 kb on + strand, within GFF2854at 278.029 kb on + strand, within GFF2854at 278.030 kb on - strand, within GFF2854at 278.030 kb on - strand, within GFF2854at 278.030 kb on - strand, within GFF2854at 278.059 kb on + strand, within GFF2854at 278.059 kb on + strand, within GFF2854at 278.059 kb on + strand, within GFF2854at 278.059 kb on + strand, within GFF2854at 278.059 kb on + strand, within GFF2854at 278.059 kb on + strand, within GFF2854at 278.059 kb on + strand, within GFF2854at 278.059 kb on + strand, within GFF2854at 278.059 kb on + strand, within GFF2854at 278.059 kb on + strand, within GFF2854at 278.059 kb on + strand, within GFF2854at 278.059 kb on + strand, within GFF2854at 278.059 kb on + strand, within GFF2854at 278.059 kb on + strand, within GFF2854at 278.059 kb on + strand, within GFF2854at 278.059 kb on + strand, within GFF2854at 278.059 kb on + strand, within GFF2854at 278.059 kb on + strand, within GFF2854at 278.059 kb on + strand, within GFF2854at 278.059 kb on + strand, within GFF2854at 278.059 kb on + strand, within GFF2854at 278.059 kb on + strand, within GFF2854at 278.059 kb on + strand, within GFF2854at 278.059 kb on + strand, within GFF2854at 278.059 kb on + strand, within GFF2854at 278.059 kb on + strand, within GFF2854at 278.059 kb on + strand, within GFF2854at 278.059 kb on + strand, within GFF2854at 278.059 kb on + strand, within GFF2854at 278.059 kb on + strand, within GFF2854at 278.059 kb on + strand, within GFF2854at 278.059 kb on + strand, within GFF2854at 278.060 kb on - strand, within GFF2854at 278.060 kb on - strand, within GFF2854at 278.060 kb on - strand, within GFF2854at 278.060 kb on - strand, within GFF2854at 278.060 kb on - strand, within GFF2854at 278.060 kb on - strand, within GFF2854at 278.060 kb on - strand, within GFF2854at 278.060 kb on - strand, within GFF2854at 278.060 kb on - strand, within GFF2854at 278.060 kb on - strand, within GFF2854at 278.060 kb on - strand, within GFF2854at 278.060 kb on - strand, within GFF2854at 278.060 kb on - strand, within GFF2854at 278.060 kb on - strand, within GFF2854at 278.060 kb on - strand, within GFF2854at 278.060 kb on - strand, within GFF2854at 278.060 kb on - strand, within GFF2854at 278.060 kb on - strand, within GFF2854at 278.060 kb on - strand, within GFF2854at 278.060 kb on - strand, within GFF2854at 278.060 kb on - strand, within GFF2854at 278.060 kb on - strand, within GFF2854at 278.155 kb on + strand, within GFF2854at 278.156 kb on - strand, within GFF2854at 278.156 kb on - strand, within GFF2854at 278.156 kb on - strand, within GFF2854at 278.156 kb on - strand, within GFF2854at 278.156 kb on - strand, within GFF2854at 278.156 kb on - strand, within GFF2854at 278.156 kb on - strand, within GFF2854at 278.311 kb on + strand, within GFF2854at 278.311 kb on + strand, within GFF2854at 278.311 kb on + strand, within GFF2854at 278.312 kb on - strand, within GFF2854at 278.312 kb on - strand, within GFF2854at 278.312 kb on - strand, within GFF2854at 278.312 kb on - strand, within GFF2854at 278.314 kb on + strand, within GFF2854at 278.314 kb on + strand, within GFF2854at 278.314 kb on + strand, within GFF2854at 278.314 kb on + strand, within GFF2854at 278.314 kb on + strand, within GFF2854at 278.315 kb on - strand, within GFF2854at 278.315 kb on - strand, within GFF2854at 278.315 kb on - strand, within GFF2854at 278.315 kb on - strand, within GFF2854at 278.541 kb on + strandat 278.541 kb on + strandat 278.541 kb on + strandat 278.541 kb on + strandat 278.541 kb on + strandat 278.542 kb on - strandat 278.542 kb on - strandat 278.542 kb on - strandat 278.542 kb on - strandat 278.542 kb on - strandat 278.542 kb on - strandat 278.542 kb on - strandat 278.542 kb on - strandat 278.542 kb on - strandat 278.542 kb on - strandat 278.542 kb on - strandat 278.542 kb on - strandat 278.542 kb on - strandat 278.728 kb on - strand, within GFF2855at 278.728 kb on - strand, within GFF2855at 278.779 kb on - strand, within GFF2855at 278.847 kb on + strand, within GFF2855at 278.847 kb on + strand, within GFF2855at 278.847 kb on + strand, within GFF2855at 278.848 kb on - strand, within GFF2855at 278.848 kb on - strand, within GFF2855at 278.848 kb on - strand, within GFF2855at 278.919 kb on + strand, within GFF2855at 278.919 kb on + strand, within GFF2855at 278.919 kb on + strand, within GFF2855at 278.920 kb on - strand, within GFF2855at 278.920 kb on - strand, within GFF2855at 278.920 kb on - strand, within GFF2855at 278.952 kb on + strand, within GFF2855at 278.952 kb on + strand, within GFF2855at 278.952 kb on + strand, within GFF2855at 278.952 kb on + strand, within GFF2855at 278.952 kb on + strand, within GFF2855at 278.952 kb on + strand, within GFF2855at 278.952 kb on + strand, within GFF2855at 278.952 kb on + strand, within GFF2855at 278.952 kb on + strand, within GFF2855at 278.952 kb on + strand, within GFF2855at 278.952 kb on + strand, within GFF2855at 278.952 kb on + strand, within GFF2855at 278.952 kb on + strand, within GFF2855at 278.952 kb on + strand, within GFF2855at 278.953 kb on - strand, within GFF2855at 278.953 kb on - strand, within GFF2855at 278.953 kb on - strand, within GFF2855at 278.953 kb on - strand, within GFF2855at 278.953 kb on - strand, within GFF2855at 278.953 kb on - strand, within GFF2855at 278.953 kb on - strand, within GFF2855at 278.953 kb on - strand, within GFF2855at 279.129 kb on + strand, within GFF2855at 279.129 kb on + strand, within GFF2855at 279.129 kb on + strand, within GFF2855at 279.129 kb on + strand, within GFF2855at 279.129 kb on + strand, within GFF2855at 279.129 kb on + strand, within GFF2855at 279.130 kb on - strand, within GFF2855at 279.130 kb on - strand, within GFF2855at 279.130 kb on - strand, within GFF2855at 279.130 kb on - strand, within GFF2855at 279.130 kb on - strand, within GFF2855at 279.130 kb on - strand, within GFF2855at 279.130 kb on - strand, within GFF2855at 279.424 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
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276,429 + GFF2852 0.86 -0.7
276,429 + GFF2852 0.86 -0.8
276,429 + GFF2852 0.86 +0.7
276,429 + GFF2852 0.86 -0.5
276,429 + GFF2852 0.86 -1.5
276,429 + GFF2852 0.86 -1.4
276,430 - GFF2852 0.86 -1.2
276,430 - GFF2852 0.86 -0.4
276,430 - GFF2852 0.86 -2.6
276,430 - GFF2852 0.86 +0.8
276,430 - GFF2852 0.86 -0.2
276,430 - GFF2852 0.86 -0.4
276,430 - GFF2852 0.86 -0.7
276,446 + GFF2852 0.87 -1.1
276,446 + GFF2852 0.87 +0.4
276,447 - GFF2852 0.87 +1.6
276,447 - GFF2852 0.87 -0.4
276,447 - GFF2852 0.87 +1.0
276,447 - GFF2852 0.87 +0.3
276,603 - -0.3
276,603 - +0.0
276,734 + +0.2
276,734 + -0.9
276,874 + +0.6
276,874 + -1.9
276,874 + +0.6
276,875 - -1.1
276,875 - -0.5
276,882 + +0.0
276,882 + -0.4
276,882 + +0.6
276,882 + -0.5
276,882 + -1.5
276,883 - +0.2
276,883 - -0.5
276,947 - GFF2853 0.24 -1.0
276,998 + GFF2853 0.43 -1.0
276,999 - GFF2853 0.43 -0.6
276,999 - GFF2853 0.43 +1.6
276,999 - GFF2853 0.43 -0.6
277,054 + GFF2853 0.63 -0.6
277,054 + GFF2853 0.63 -1.4
277,055 - GFF2853 0.64 -0.2
277,167 - -2.3
277,167 - -0.9
277,272 + +0.1
277,272 + +0.5
277,272 + +0.8
277,272 + -2.2
277,272 + -1.3
277,272 + -0.1
277,273 - -0.3
277,273 - -0.6
277,273 - -0.2
277,273 - -0.2
277,273 - -0.8
277,273 - -0.5
277,273 - +0.3
277,273 - +0.4
277,273 - -0.5
277,273 - -1.3
277,273 - +0.0
277,299 + +0.2
277,299 + +1.5
277,299 + -0.0
277,300 - -1.7
277,300 - -0.6
277,300 - +2.2
277,340 - -0.8
277,340 - -1.2
277,811 - GFF2854 0.40 +0.1
278,005 + GFF2854 0.58 +0.1
278,005 + GFF2854 0.58 +0.6
278,005 + GFF2854 0.58 +0.3
278,005 + GFF2854 0.58 -0.2
278,005 + GFF2854 0.58 +1.2
278,005 + GFF2854 0.58 +1.0
278,005 + GFF2854 0.58 -0.2
278,006 - GFF2854 0.58 +0.1
278,006 - GFF2854 0.58 +0.8
278,006 - GFF2854 0.58 +0.6
278,006 - GFF2854 0.58 +0.1
278,006 - GFF2854 0.58 -0.9
278,006 - GFF2854 0.58 -0.1
278,006 - GFF2854 0.58 +3.2
278,029 + GFF2854 0.60 -2.2
278,029 + GFF2854 0.60 -0.6
278,029 + GFF2854 0.60 -0.1
278,030 - GFF2854 0.60 +0.8
278,030 - GFF2854 0.60 +0.9
278,030 - GFF2854 0.60 +0.3
278,059 + GFF2854 0.63 +0.3
278,059 + GFF2854 0.63 -0.0
278,059 + GFF2854 0.63 +1.8
278,059 + GFF2854 0.63 +0.4
278,059 + GFF2854 0.63 -1.1
278,059 + GFF2854 0.63 -0.1
278,059 + GFF2854 0.63 -2.1
278,059 + GFF2854 0.63 -1.4
278,059 + GFF2854 0.63 -0.1
278,059 + GFF2854 0.63 -0.9
278,059 + GFF2854 0.63 +0.3
278,059 + GFF2854 0.63 +0.2
278,059 + GFF2854 0.63 -0.2
278,059 + GFF2854 0.63 +0.1
278,059 + GFF2854 0.63 +0.8
278,059 + GFF2854 0.63 +0.5
278,059 + GFF2854 0.63 +1.6
278,059 + GFF2854 0.63 -0.3
278,059 + GFF2854 0.63 +0.2
278,059 + GFF2854 0.63 +1.0
278,059 + GFF2854 0.63 -2.4
278,059 + GFF2854 0.63 -0.6
278,059 + GFF2854 0.63 +0.5
278,059 + GFF2854 0.63 +1.4
278,059 + GFF2854 0.63 +0.6
278,059 + GFF2854 0.63 -0.6
278,059 + GFF2854 0.63 -0.6
278,059 + GFF2854 0.63 -1.3
278,059 + GFF2854 0.63 -0.6
278,059 + GFF2854 0.63 +0.1
278,059 + GFF2854 0.63 +0.2
278,059 + GFF2854 0.63 +0.5
278,060 - GFF2854 0.63 +0.7
278,060 - GFF2854 0.63 -0.7
278,060 - GFF2854 0.63 +0.2
278,060 - GFF2854 0.63 -0.4
278,060 - GFF2854 0.63 -0.2
278,060 - GFF2854 0.63 -0.7
278,060 - GFF2854 0.63 -1.6
278,060 - GFF2854 0.63 -1.0
278,060 - GFF2854 0.63 +0.6
278,060 - GFF2854 0.63 +0.0
278,060 - GFF2854 0.63 +0.8
278,060 - GFF2854 0.63 -0.5
278,060 - GFF2854 0.63 -0.6
278,060 - GFF2854 0.63 -0.6
278,060 - GFF2854 0.63 +0.1
278,060 - GFF2854 0.63 +0.6
278,060 - GFF2854 0.63 -0.6
278,060 - GFF2854 0.63 +0.2
278,060 - GFF2854 0.63 +0.6
278,060 - GFF2854 0.63 -1.1
278,060 - GFF2854 0.63 +0.2
278,060 - GFF2854 0.63 +0.6
278,155 + GFF2854 0.72 -0.5
278,156 - GFF2854 0.72 -0.5
278,156 - GFF2854 0.72 +0.2
278,156 - GFF2854 0.72 +2.3
278,156 - GFF2854 0.72 -0.3
278,156 - GFF2854 0.72 -0.4
278,156 - GFF2854 0.72 +1.1
278,156 - GFF2854 0.72 +1.2
278,311 + GFF2854 0.86 +0.0
278,311 + GFF2854 0.86 +1.6
278,311 + GFF2854 0.86 -0.1
278,312 - GFF2854 0.86 +0.2
278,312 - GFF2854 0.86 +0.2
278,312 - GFF2854 0.86 +0.3
278,312 - GFF2854 0.86 +0.7
278,314 + GFF2854 0.87 -0.0
278,314 + GFF2854 0.87 -0.1
278,314 + GFF2854 0.87 +0.4
278,314 + GFF2854 0.87 -0.2
278,314 + GFF2854 0.87 -0.3
278,315 - GFF2854 0.87 +0.0
278,315 - GFF2854 0.87 -1.6
278,315 - GFF2854 0.87 -0.8
278,315 - GFF2854 0.87 +0.1
278,541 + -1.0
278,541 + -0.4
278,541 + +0.6
278,541 + -1.0
278,541 + -0.3
278,542 - -0.6
278,542 - -0.1
278,542 - -1.2
278,542 - +0.1
278,542 - -0.3
278,542 - -0.0
278,542 - -0.5
278,542 - +0.2
278,542 - -0.1
278,542 - -0.3
278,542 - +0.6
278,542 - +1.6
278,542 - -0.4
278,728 - GFF2855 0.29 -1.9
278,728 - GFF2855 0.29 -1.4
278,779 - GFF2855 0.34 -0.2
278,847 + GFF2855 0.41 +1.1
278,847 + GFF2855 0.41 -1.0
278,847 + GFF2855 0.41 +0.6
278,848 - GFF2855 0.41 -0.5
278,848 - GFF2855 0.41 +0.4
278,848 - GFF2855 0.41 -0.2
278,919 + GFF2855 0.49 +0.4
278,919 + GFF2855 0.49 +0.3
278,919 + GFF2855 0.49 -0.5
278,920 - GFF2855 0.49 +0.2
278,920 - GFF2855 0.49 +1.6
278,920 - GFF2855 0.49 +0.2
278,952 + GFF2855 0.52 +0.7
278,952 + GFF2855 0.52 -0.6
278,952 + GFF2855 0.52 +0.1
278,952 + GFF2855 0.52 +1.0
278,952 + GFF2855 0.52 -0.7
278,952 + GFF2855 0.52 +1.5
278,952 + GFF2855 0.52 -0.2
278,952 + GFF2855 0.52 -0.6
278,952 + GFF2855 0.52 +0.6
278,952 + GFF2855 0.52 -0.2
278,952 + GFF2855 0.52 -2.0
278,952 + GFF2855 0.52 +0.6
278,952 + GFF2855 0.52 +1.3
278,952 + GFF2855 0.52 -3.6
278,953 - GFF2855 0.53 +0.9
278,953 - GFF2855 0.53 +0.1
278,953 - GFF2855 0.53 -1.4
278,953 - GFF2855 0.53 -0.6
278,953 - GFF2855 0.53 +0.0
278,953 - GFF2855 0.53 -1.0
278,953 - GFF2855 0.53 -0.3
278,953 - GFF2855 0.53 +0.0
279,129 + GFF2855 0.71 +0.1
279,129 + GFF2855 0.71 +0.4
279,129 + GFF2855 0.71 -0.1
279,129 + GFF2855 0.71 -0.7
279,129 + GFF2855 0.71 +0.9
279,129 + GFF2855 0.71 +0.9
279,130 - GFF2855 0.71 -0.2
279,130 - GFF2855 0.71 -0.1
279,130 - GFF2855 0.71 -0.4
279,130 - GFF2855 0.71 -0.2
279,130 - GFF2855 0.71 -0.9
279,130 - GFF2855 0.71 +0.2
279,130 - GFF2855 0.71 -0.2
279,424 - -0.4

Or see this region's nucleotide sequence