Strain Fitness in Variovorax sp. SCN45 around GFF2640

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2639 and GFF2640 are separated by 28 nucleotidesGFF2640 and GFF2641 are separated by 31 nucleotidesGFF2641 and GFF2642 overlap by 14 nucleotides GFF2639 - Ferrichrome-iron receptor, at 52,646 to 54,940 GFF2639 GFF2640 - PKHD-type hydroxylase YbiX, at 54,969 to 55,655 GFF2640 GFF2641 - ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines), at 55,687 to 56,538 GFF2641 GFF2642 - Enoyl-CoA hydratase (EC 4.2.1.17), at 56,525 to 57,313 GFF2642 Position (kb) 54 55 56Strain fitness (log2 ratio) -2 -1 0 1at 54.014 kb on + strand, within GFF2639at 54.015 kb on - strand, within GFF2639at 54.092 kb on + strand, within GFF2639at 54.279 kb on - strand, within GFF2639at 54.281 kb on + strand, within GFF2639at 54.281 kb on + strand, within GFF2639at 54.281 kb on + strand, within GFF2639at 54.281 kb on + strand, within GFF2639at 54.282 kb on - strand, within GFF2639at 54.282 kb on - strand, within GFF2639at 54.282 kb on - strand, within GFF2639at 54.282 kb on - strand, within GFF2639at 54.282 kb on - strand, within GFF2639at 54.290 kb on + strand, within GFF2639at 54.290 kb on + strand, within GFF2639at 54.378 kb on - strand, within GFF2639at 54.485 kb on + strand, within GFF2639at 54.486 kb on - strand, within GFF2639at 54.572 kb on + strand, within GFF2639at 54.572 kb on + strand, within GFF2639at 54.573 kb on - strand, within GFF2639at 54.574 kb on + strand, within GFF2639at 54.574 kb on + strand, within GFF2639at 54.574 kb on + strand, within GFF2639at 54.575 kb on - strand, within GFF2639at 54.575 kb on - strand, within GFF2639at 54.575 kb on - strand, within GFF2639at 54.575 kb on - strand, within GFF2639at 54.575 kb on - strand, within GFF2639at 54.631 kb on - strand, within GFF2639at 54.674 kb on + strand, within GFF2639at 54.674 kb on + strand, within GFF2639at 54.674 kb on + strand, within GFF2639at 54.675 kb on - strand, within GFF2639at 54.675 kb on - strand, within GFF2639at 54.717 kb on - strandat 54.717 kb on - strandat 54.767 kb on + strandat 54.767 kb on + strandat 54.768 kb on - strandat 54.794 kb on + strandat 54.794 kb on + strandat 54.794 kb on + strandat 54.795 kb on - strandat 54.809 kb on + strandat 54.809 kb on + strandat 54.810 kb on - strandat 54.810 kb on - strandat 54.810 kb on - strandat 54.851 kb on + strandat 54.851 kb on + strandat 54.852 kb on - strandat 54.852 kb on - strandat 54.854 kb on + strandat 54.854 kb on + strandat 54.855 kb on - strandat 54.929 kb on + strandat 54.929 kb on + strandat 54.930 kb on - strandat 54.930 kb on - strandat 54.963 kb on + strandat 54.964 kb on - strandat 54.964 kb on - strandat 54.991 kb on + strandat 54.992 kb on - strandat 55.213 kb on - strand, within GFF2640at 55.353 kb on + strand, within GFF2640at 55.354 kb on - strand, within GFF2640at 55.562 kb on - strand, within GFF2640at 55.621 kb on - strandat 55.621 kb on - strandat 55.621 kb on - strandat 55.621 kb on - strandat 55.653 kb on + strandat 55.654 kb on - strandat 56.071 kb on + strand, within GFF2641at 56.071 kb on + strand, within GFF2641at 56.071 kb on + strand, within GFF2641at 56.071 kb on + strand, within GFF2641at 56.071 kb on + strand, within GFF2641at 56.072 kb on - strand, within GFF2641at 56.072 kb on - strand, within GFF2641at 56.104 kb on + strand, within GFF2641at 56.104 kb on + strand, within GFF2641at 56.105 kb on - strand, within GFF2641at 56.105 kb on - strand, within GFF2641at 56.105 kb on - strand, within GFF2641at 56.105 kb on - strand, within GFF2641at 56.191 kb on + strand, within GFF2641at 56.191 kb on + strand, within GFF2641at 56.192 kb on - strand, within GFF2641at 56.354 kb on + strand, within GFF2641

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
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54,014 + GFF2639 0.60 -0.2
54,015 - GFF2639 0.60 -0.4
54,092 + GFF2639 0.63 -1.1
54,279 - GFF2639 0.71 -0.5
54,281 + GFF2639 0.71 +0.3
54,281 + GFF2639 0.71 +0.6
54,281 + GFF2639 0.71 -0.7
54,281 + GFF2639 0.71 -0.3
54,282 - GFF2639 0.71 +0.9
54,282 - GFF2639 0.71 -0.4
54,282 - GFF2639 0.71 -1.2
54,282 - GFF2639 0.71 -0.3
54,282 - GFF2639 0.71 +0.2
54,290 + GFF2639 0.72 +0.6
54,290 + GFF2639 0.72 +0.6
54,378 - GFF2639 0.75 -0.8
54,485 + GFF2639 0.80 -0.0
54,486 - GFF2639 0.80 -0.4
54,572 + GFF2639 0.84 -0.4
54,572 + GFF2639 0.84 +1.0
54,573 - GFF2639 0.84 -0.4
54,574 + GFF2639 0.84 +0.2
54,574 + GFF2639 0.84 -0.2
54,574 + GFF2639 0.84 +0.1
54,575 - GFF2639 0.84 +0.5
54,575 - GFF2639 0.84 +1.0
54,575 - GFF2639 0.84 -0.7
54,575 - GFF2639 0.84 -0.0
54,575 - GFF2639 0.84 -0.3
54,631 - GFF2639 0.86 -0.2
54,674 + GFF2639 0.88 -0.4
54,674 + GFF2639 0.88 +0.1
54,674 + GFF2639 0.88 -0.0
54,675 - GFF2639 0.88 -0.4
54,675 - GFF2639 0.88 -0.7
54,717 - -0.3
54,717 - -0.3
54,767 + -0.2
54,767 + -1.9
54,768 - -1.2
54,794 + -1.6
54,794 + -0.9
54,794 + -1.2
54,795 - -1.7
54,809 + +0.3
54,809 + -0.0
54,810 - +0.3
54,810 - +0.1
54,810 - +0.6
54,851 + +0.6
54,851 + -0.8
54,852 - -0.4
54,852 - -0.3
54,854 + -0.0
54,854 + -0.0
54,855 - -1.0
54,929 + +0.6
54,929 + -1.3
54,930 - +0.1
54,930 - -0.4
54,963 + +0.1
54,964 - +0.2
54,964 - -0.1
54,991 + -0.2
54,992 - -1.0
55,213 - GFF2640 0.36 +0.8
55,353 + GFF2640 0.56 +0.3
55,354 - GFF2640 0.56 +0.7
55,562 - GFF2640 0.86 +0.1
55,621 - +0.1
55,621 - -0.3
55,621 - +0.8
55,621 - -0.3
55,653 + -0.3
55,654 - -0.1
56,071 + GFF2641 0.45 +1.2
56,071 + GFF2641 0.45 +0.5
56,071 + GFF2641 0.45 -0.3
56,071 + GFF2641 0.45 +0.1
56,071 + GFF2641 0.45 -0.2
56,072 - GFF2641 0.45 +0.4
56,072 - GFF2641 0.45 -0.2
56,104 + GFF2641 0.49 -0.4
56,104 + GFF2641 0.49 -0.0
56,105 - GFF2641 0.49 -0.5
56,105 - GFF2641 0.49 +0.2
56,105 - GFF2641 0.49 -2.7
56,105 - GFF2641 0.49 +0.7
56,191 + GFF2641 0.59 +0.3
56,191 + GFF2641 0.59 -0.6
56,192 - GFF2641 0.59 +0.6
56,354 + GFF2641 0.78 -0.9

Or see this region's nucleotide sequence