Strain Fitness in Variovorax sp. SCN45 around GFF2442

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2441 and GFF2442 are separated by 10 nucleotidesGFF2442 and GFF2443 are separated by 236 nucleotidesGFF2443 and GFF2444 are separated by 26 nucleotides GFF2441 - RND efflux system, inner membrane transporter, at 492,550 to 495,678 GFF2441 GFF2442 - RND efflux system, membrane fusion protein, at 495,689 to 496,840 GFF2442 GFF2443 - Iron-sulfur cluster regulator IscR, at 497,077 to 497,619 GFF2443 GFF2444 - Integral membrane protein, interacts with FtsH, at 497,646 to 498,341 GFF2444 Position (kb) 495 496 497Strain fitness (log2 ratio) -2 -1 0 1at 494.703 kb on - strand, within GFF2441at 494.852 kb on + strand, within GFF2441at 494.853 kb on - strand, within GFF2441at 495.089 kb on + strand, within GFF2441at 495.090 kb on - strand, within GFF2441at 495.090 kb on - strand, within GFF2441at 495.131 kb on + strand, within GFF2441at 495.131 kb on + strand, within GFF2441at 495.132 kb on - strand, within GFF2441at 495.248 kb on + strand, within GFF2441at 495.249 kb on - strand, within GFF2441at 495.249 kb on - strand, within GFF2441at 495.287 kb on + strand, within GFF2441at 495.287 kb on + strand, within GFF2441at 495.288 kb on - strand, within GFF2441at 495.288 kb on - strand, within GFF2441at 495.288 kb on - strand, within GFF2441at 495.416 kb on + strandat 495.447 kb on - strandat 495.447 kb on - strandat 495.447 kb on - strandat 495.530 kb on + strandat 495.530 kb on + strandat 495.530 kb on + strandat 495.572 kb on + strandat 495.987 kb on + strand, within GFF2442at 495.987 kb on + strand, within GFF2442at 495.987 kb on + strand, within GFF2442at 495.987 kb on + strand, within GFF2442at 495.987 kb on + strand, within GFF2442at 495.987 kb on + strand, within GFF2442at 495.988 kb on - strand, within GFF2442at 495.988 kb on - strand, within GFF2442at 495.988 kb on - strand, within GFF2442at 495.988 kb on - strand, within GFF2442at 496.101 kb on + strand, within GFF2442at 496.218 kb on + strand, within GFF2442at 496.218 kb on + strand, within GFF2442at 496.219 kb on - strand, within GFF2442at 496.219 kb on - strand, within GFF2442at 496.219 kb on - strand, within GFF2442at 496.575 kb on + strand, within GFF2442at 496.576 kb on - strand, within GFF2442at 496.576 kb on - strand, within GFF2442at 496.576 kb on - strand, within GFF2442at 496.897 kb on + strandat 496.898 kb on - strandat 496.898 kb on - strandat 496.898 kb on - strandat 497.078 kb on + strandat 497.078 kb on + strandat 497.078 kb on + strandat 497.078 kb on + strandat 497.078 kb on + strandat 497.078 kb on + strandat 497.078 kb on + strandat 497.079 kb on - strandat 497.079 kb on - strandat 497.079 kb on - strandat 497.079 kb on - strandat 497.079 kb on - strandat 497.079 kb on - strandat 497.397 kb on - strand, within GFF2443at 497.400 kb on + strand, within GFF2443at 497.400 kb on + strand, within GFF2443at 497.400 kb on + strand, within GFF2443at 497.401 kb on - strand, within GFF2443at 497.498 kb on + strand, within GFF2443at 497.498 kb on + strand, within GFF2443at 497.498 kb on + strand, within GFF2443at 497.498 kb on + strand, within GFF2443at 497.498 kb on + strand, within GFF2443at 497.499 kb on - strand, within GFF2443at 497.499 kb on - strand, within GFF2443at 497.499 kb on - strand, within GFF2443at 497.634 kb on + strandat 497.635 kb on - strandat 497.647 kb on + strandat 497.648 kb on - strandat 497.648 kb on - strandat 497.648 kb on - strandat 497.704 kb on + strandat 497.704 kb on + strandat 497.704 kb on + strandat 497.704 kb on + strandat 497.704 kb on + strandat 497.704 kb on + strandat 497.704 kb on + strandat 497.704 kb on + strandat 497.704 kb on + strandat 497.704 kb on + strandat 497.705 kb on - strandat 497.705 kb on - strandat 497.705 kb on - strandat 497.705 kb on - strandat 497.705 kb on - strandat 497.705 kb on - strandat 497.705 kb on - strandat 497.705 kb on - strandat 497.705 kb on - strandat 497.705 kb on - strandat 497.705 kb on - strandat 497.716 kb on + strand, within GFF2444at 497.716 kb on + strand, within GFF2444at 497.716 kb on + strand, within GFF2444at 497.716 kb on + strand, within GFF2444at 497.716 kb on + strand, within GFF2444at 497.716 kb on + strand, within GFF2444at 497.717 kb on - strand, within GFF2444at 497.717 kb on - strand, within GFF2444at 497.717 kb on - strand, within GFF2444at 497.717 kb on - strand, within GFF2444at 497.717 kb on - strand, within GFF2444at 497.717 kb on - strand, within GFF2444at 497.717 kb on - strand, within GFF2444at 497.717 kb on - strand, within GFF2444at 497.717 kb on - strand, within GFF2444at 497.740 kb on + strand, within GFF2444at 497.740 kb on + strand, within GFF2444at 497.740 kb on + strand, within GFF2444at 497.740 kb on + strand, within GFF2444at 497.740 kb on + strand, within GFF2444at 497.740 kb on + strand, within GFF2444at 497.740 kb on + strand, within GFF2444at 497.740 kb on + strand, within GFF2444at 497.740 kb on + strand, within GFF2444at 497.740 kb on + strand, within GFF2444at 497.740 kb on + strand, within GFF2444at 497.740 kb on + strand, within GFF2444at 497.740 kb on + strand, within GFF2444at 497.740 kb on + strand, within GFF2444at 497.740 kb on + strand, within GFF2444at 497.740 kb on + strand, within GFF2444at 497.740 kb on + strand, within GFF2444at 497.740 kb on + strand, within GFF2444at 497.740 kb on + strand, within GFF2444at 497.740 kb on + strand, within GFF2444at 497.740 kb on + strand, within GFF2444at 497.740 kb on + strand, within GFF2444at 497.740 kb on + strand, within GFF2444at 497.740 kb on + strand, within GFF2444at 497.741 kb on - strand, within GFF2444at 497.741 kb on - strand, within GFF2444at 497.741 kb on - strand, within GFF2444at 497.741 kb on - strand, within GFF2444at 497.741 kb on - strand, within GFF2444at 497.741 kb on - strand, within GFF2444at 497.741 kb on - strand, within GFF2444at 497.741 kb on - strand, within GFF2444at 497.741 kb on - strand, within GFF2444at 497.741 kb on - strand, within GFF2444at 497.741 kb on - strand, within GFF2444at 497.741 kb on - strand, within GFF2444at 497.741 kb on - strand, within GFF2444at 497.741 kb on - strand, within GFF2444at 497.741 kb on - strand, within GFF2444at 497.741 kb on - strand, within GFF2444at 497.741 kb on - strand, within GFF2444at 497.741 kb on - strand, within GFF2444at 497.741 kb on - strand, within GFF2444at 497.741 kb on - strand, within GFF2444at 497.741 kb on - strand, within GFF2444at 497.741 kb on - strand, within GFF2444

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
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494,703 - GFF2441 0.69 -0.5
494,852 + GFF2441 0.74 +0.2
494,853 - GFF2441 0.74 -1.1
495,089 + GFF2441 0.81 +0.5
495,090 - GFF2441 0.81 -0.2
495,090 - GFF2441 0.81 -1.0
495,131 + GFF2441 0.82 +1.3
495,131 + GFF2441 0.82 -0.1
495,132 - GFF2441 0.83 +0.1
495,248 + GFF2441 0.86 +0.6
495,249 - GFF2441 0.86 +0.1
495,249 - GFF2441 0.86 -0.3
495,287 + GFF2441 0.87 +0.3
495,287 + GFF2441 0.87 +0.1
495,288 - GFF2441 0.88 -0.4
495,288 - GFF2441 0.88 -2.4
495,288 - GFF2441 0.88 +1.7
495,416 + -0.3
495,447 - -0.4
495,447 - +0.5
495,447 - -0.3
495,530 + -1.1
495,530 + +0.1
495,530 + +0.7
495,572 + +0.3
495,987 + GFF2442 0.26 -0.7
495,987 + GFF2442 0.26 -0.1
495,987 + GFF2442 0.26 +0.1
495,987 + GFF2442 0.26 -0.1
495,987 + GFF2442 0.26 -0.4
495,987 + GFF2442 0.26 -0.9
495,988 - GFF2442 0.26 +0.5
495,988 - GFF2442 0.26 +0.9
495,988 - GFF2442 0.26 -0.1
495,988 - GFF2442 0.26 -0.3
496,101 + GFF2442 0.36 +0.5
496,218 + GFF2442 0.46 -1.5
496,218 + GFF2442 0.46 -1.2
496,219 - GFF2442 0.46 -0.2
496,219 - GFF2442 0.46 +1.4
496,219 - GFF2442 0.46 -1.9
496,575 + GFF2442 0.77 +1.7
496,576 - GFF2442 0.77 -1.2
496,576 - GFF2442 0.77 -0.6
496,576 - GFF2442 0.77 -0.6
496,897 + -1.9
496,898 - +0.8
496,898 - +0.0
496,898 - -0.6
497,078 + -0.9
497,078 + +0.2
497,078 + -0.8
497,078 + +0.7
497,078 + -0.1
497,078 + -0.0
497,078 + -0.0
497,079 - -0.3
497,079 - -0.7
497,079 - -0.3
497,079 - -0.2
497,079 - +0.1
497,079 - -0.1
497,397 - GFF2443 0.59 +1.4
497,400 + GFF2443 0.59 +0.2
497,400 + GFF2443 0.59 -1.7
497,400 + GFF2443 0.59 -0.2
497,401 - GFF2443 0.60 -0.3
497,498 + GFF2443 0.78 -0.2
497,498 + GFF2443 0.78 -0.3
497,498 + GFF2443 0.78 -0.3
497,498 + GFF2443 0.78 -0.8
497,498 + GFF2443 0.78 +0.9
497,499 - GFF2443 0.78 -1.1
497,499 - GFF2443 0.78 +0.4
497,499 - GFF2443 0.78 +0.1
497,634 + -1.2
497,635 - -0.6
497,647 + -0.3
497,648 - -0.6
497,648 - -0.9
497,648 - -0.0
497,704 + -0.2
497,704 + -0.6
497,704 + -0.3
497,704 + -0.1
497,704 + -0.5
497,704 + +1.3
497,704 + +0.6
497,704 + +0.3
497,704 + +1.0
497,704 + -0.2
497,705 - +0.0
497,705 - -1.7
497,705 - -1.1
497,705 - -0.7
497,705 - -0.2
497,705 - +1.1
497,705 - -0.7
497,705 - -0.5
497,705 - -0.5
497,705 - +0.5
497,705 - +0.2
497,716 + GFF2444 0.10 -0.4
497,716 + GFF2444 0.10 +0.2
497,716 + GFF2444 0.10 +0.2
497,716 + GFF2444 0.10 -0.2
497,716 + GFF2444 0.10 +0.7
497,716 + GFF2444 0.10 +0.9
497,717 - GFF2444 0.10 +0.4
497,717 - GFF2444 0.10 -0.6
497,717 - GFF2444 0.10 -0.7
497,717 - GFF2444 0.10 +1.7
497,717 - GFF2444 0.10 -0.5
497,717 - GFF2444 0.10 -0.8
497,717 - GFF2444 0.10 -0.3
497,717 - GFF2444 0.10 +0.0
497,717 - GFF2444 0.10 -0.3
497,740 + GFF2444 0.14 +0.2
497,740 + GFF2444 0.14 +0.6
497,740 + GFF2444 0.14 -1.3
497,740 + GFF2444 0.14 -0.3
497,740 + GFF2444 0.14 -0.5
497,740 + GFF2444 0.14 +1.4
497,740 + GFF2444 0.14 +0.1
497,740 + GFF2444 0.14 +0.2
497,740 + GFF2444 0.14 +0.6
497,740 + GFF2444 0.14 -1.1
497,740 + GFF2444 0.14 -0.8
497,740 + GFF2444 0.14 -2.1
497,740 + GFF2444 0.14 -0.4
497,740 + GFF2444 0.14 -0.9
497,740 + GFF2444 0.14 -0.9
497,740 + GFF2444 0.14 -0.9
497,740 + GFF2444 0.14 +0.3
497,740 + GFF2444 0.14 -1.4
497,740 + GFF2444 0.14 -0.1
497,740 + GFF2444 0.14 -0.3
497,740 + GFF2444 0.14 +0.1
497,740 + GFF2444 0.14 +1.5
497,740 + GFF2444 0.14 -0.1
497,740 + GFF2444 0.14 +0.3
497,741 - GFF2444 0.14 +0.7
497,741 - GFF2444 0.14 -0.6
497,741 - GFF2444 0.14 +0.1
497,741 - GFF2444 0.14 -0.9
497,741 - GFF2444 0.14 -0.7
497,741 - GFF2444 0.14 -1.4
497,741 - GFF2444 0.14 +1.1
497,741 - GFF2444 0.14 +0.6
497,741 - GFF2444 0.14 -0.4
497,741 - GFF2444 0.14 +1.0
497,741 - GFF2444 0.14 -2.3
497,741 - GFF2444 0.14 -0.1
497,741 - GFF2444 0.14 -1.0
497,741 - GFF2444 0.14 -0.2
497,741 - GFF2444 0.14 +0.8
497,741 - GFF2444 0.14 -0.3
497,741 - GFF2444 0.14 -0.6
497,741 - GFF2444 0.14 +1.3
497,741 - GFF2444 0.14 -1.3
497,741 - GFF2444 0.14 -0.3
497,741 - GFF2444 0.14 +0.2
497,741 - GFF2444 0.14 +0.2

Or see this region's nucleotide sequence