Strain Fitness in Variovorax sp. SCN45 around GFF2075

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2073 and GFF2074 overlap by 4 nucleotidesGFF2074 and GFF2075 are separated by 4 nucleotidesGFF2075 and GFF2076 are separated by 24 nucleotides GFF2073 - Holliday junction ATP-dependent DNA helicase RuvA (EC 3.6.4.12), at 119,705 to 120,277 GFF2073 GFF2074 - hypothetical protein, at 120,274 to 121,161 GFF2074 GFF2075 - BUG/TctC family periplasmic protein, at 121,166 to 122,161 GFF2075 GFF2076 - Alkyl sulfatase and related hydrolases, MBL-fold metallo-hydrolase superfamily, at 122,186 to 123,457 GFF2076 Position (kb) 121 122 123Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 120.388 kb on + strand, within GFF2074at 120.409 kb on + strand, within GFF2074at 120.410 kb on - strand, within GFF2074at 120.410 kb on - strand, within GFF2074at 121.054 kb on + strand, within GFF2074at 121.055 kb on - strand, within GFF2074at 121.395 kb on + strand, within GFF2075at 121.395 kb on + strand, within GFF2075at 121.395 kb on + strand, within GFF2075at 121.395 kb on + strand, within GFF2075at 121.395 kb on + strand, within GFF2075at 121.396 kb on - strand, within GFF2075at 121.396 kb on - strand, within GFF2075at 121.396 kb on - strand, within GFF2075at 121.396 kb on - strand, within GFF2075at 121.587 kb on + strand, within GFF2075at 121.587 kb on + strand, within GFF2075at 121.588 kb on - strand, within GFF2075at 121.674 kb on + strand, within GFF2075at 121.674 kb on + strand, within GFF2075at 121.674 kb on + strand, within GFF2075at 121.674 kb on + strand, within GFF2075at 121.674 kb on + strand, within GFF2075at 121.675 kb on - strand, within GFF2075at 121.675 kb on - strand, within GFF2075at 121.675 kb on - strand, within GFF2075at 121.675 kb on - strand, within GFF2075at 121.675 kb on - strand, within GFF2075at 121.675 kb on - strand, within GFF2075at 121.704 kb on + strand, within GFF2075at 121.827 kb on + strand, within GFF2075at 121.828 kb on - strand, within GFF2075at 121.828 kb on - strand, within GFF2075at 121.860 kb on + strand, within GFF2075at 121.860 kb on + strand, within GFF2075at 121.860 kb on + strand, within GFF2075at 121.860 kb on + strand, within GFF2075at 121.860 kb on + strand, within GFF2075at 122.061 kb on + strand, within GFF2075at 122.061 kb on + strand, within GFF2075at 122.062 kb on - strandat 122.062 kb on - strandat 122.244 kb on + strandat 122.245 kb on - strandat 122.263 kb on - strandat 122.263 kb on - strandat 122.263 kb on - strandat 122.263 kb on - strandat 122.263 kb on - strandat 122.263 kb on - strandat 122.532 kb on + strand, within GFF2076at 122.532 kb on + strand, within GFF2076at 122.532 kb on + strand, within GFF2076at 122.532 kb on + strand, within GFF2076at 122.533 kb on - strand, within GFF2076at 122.533 kb on - strand, within GFF2076at 122.533 kb on - strand, within GFF2076at 122.550 kb on + strand, within GFF2076at 122.550 kb on + strand, within GFF2076at 122.550 kb on + strand, within GFF2076at 122.565 kb on + strand, within GFF2076at 122.566 kb on - strand, within GFF2076at 122.971 kb on + strand, within GFF2076at 122.972 kb on + strand, within GFF2076at 122.973 kb on - strand, within GFF2076at 122.973 kb on - strand, within GFF2076at 122.973 kb on - strand, within GFF2076

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
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120,388 + GFF2074 0.13 -0.6
120,409 + GFF2074 0.15 +0.8
120,410 - GFF2074 0.15 -0.7
120,410 - GFF2074 0.15 -0.6
121,054 + GFF2074 0.88 +1.8
121,055 - GFF2074 0.88 +0.1
121,395 + GFF2075 0.23 -2.1
121,395 + GFF2075 0.23 +1.6
121,395 + GFF2075 0.23 -0.8
121,395 + GFF2075 0.23 -0.1
121,395 + GFF2075 0.23 -0.6
121,396 - GFF2075 0.23 +1.3
121,396 - GFF2075 0.23 -1.4
121,396 - GFF2075 0.23 -1.3
121,396 - GFF2075 0.23 -2.0
121,587 + GFF2075 0.42 +0.1
121,587 + GFF2075 0.42 -1.0
121,588 - GFF2075 0.42 -0.4
121,674 + GFF2075 0.51 +0.1
121,674 + GFF2075 0.51 -0.2
121,674 + GFF2075 0.51 -0.2
121,674 + GFF2075 0.51 -2.5
121,674 + GFF2075 0.51 -0.8
121,675 - GFF2075 0.51 -0.3
121,675 - GFF2075 0.51 -0.0
121,675 - GFF2075 0.51 +0.3
121,675 - GFF2075 0.51 -1.4
121,675 - GFF2075 0.51 +0.6
121,675 - GFF2075 0.51 +0.2
121,704 + GFF2075 0.54 -1.5
121,827 + GFF2075 0.66 -0.2
121,828 - GFF2075 0.66 -0.9
121,828 - GFF2075 0.66 -1.4
121,860 + GFF2075 0.70 -1.0
121,860 + GFF2075 0.70 -0.5
121,860 + GFF2075 0.70 +0.0
121,860 + GFF2075 0.70 -2.2
121,860 + GFF2075 0.70 -0.3
122,061 + GFF2075 0.90 +0.0
122,061 + GFF2075 0.90 -0.4
122,062 - -1.7
122,062 - -0.8
122,244 + -0.6
122,245 - -0.2
122,263 - +0.4
122,263 - -1.0
122,263 - -0.5
122,263 - -0.4
122,263 - -0.3
122,263 - -0.4
122,532 + GFF2076 0.27 -3.0
122,532 + GFF2076 0.27 -0.3
122,532 + GFF2076 0.27 +0.2
122,532 + GFF2076 0.27 -0.3
122,533 - GFF2076 0.27 -0.2
122,533 - GFF2076 0.27 -0.6
122,533 - GFF2076 0.27 -0.4
122,550 + GFF2076 0.29 +0.9
122,550 + GFF2076 0.29 -0.4
122,550 + GFF2076 0.29 +1.0
122,565 + GFF2076 0.30 -0.7
122,566 - GFF2076 0.30 +1.8
122,971 + GFF2076 0.62 +0.3
122,972 + GFF2076 0.62 +1.8
122,973 - GFF2076 0.62 -0.3
122,973 - GFF2076 0.62 +1.3
122,973 - GFF2076 0.62 -0.2

Or see this region's nucleotide sequence