Strain Fitness in Variovorax sp. SCN45 around GFF2061

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
108,366	+		GFF2059	0.77	-0.5
108,366	+		GFF2059	0.77	+0.9
108,366	+		GFF2059	0.77	-0.5
108,366	+		GFF2059	0.77	+1.8
108,366	+		GFF2059	0.77	+0.2
108,366	+		GFF2059	0.77	-0.7
108,366	+		GFF2059	0.77	-0.5
108,366	+		GFF2059	0.77	-0.5
108,366	+		GFF2059	0.77	+0.0
108,366	+		GFF2059	0.77	-1.0
108,366	+		GFF2059	0.77	+0.0
108,366	+		GFF2059	0.77	-1.1
108,367	-		GFF2059	0.77	-0.5
108,367	-		GFF2059	0.77	+1.8
108,367	-		GFF2059	0.77	+2.0
108,367	-		GFF2059	0.77	-0.1
108,367	-		GFF2059	0.77	-0.9
108,367	-		GFF2059	0.77	-0.4
108,367	-		GFF2059	0.77	+0.1
108,367	-		GFF2059	0.77	-1.0
108,367	-		GFF2059	0.77	-0.0
108,367	-		GFF2059	0.77	-0.1
108,474	+		GFF2059	0.86	-0.3
108,474	+		GFF2059	0.86	+0.8
108,475	-		GFF2059	0.86	-0.9
108,475	-		GFF2059	0.86	+1.4
108,489	+		GFF2059	0.87	-0.3
108,489	+		GFF2059	0.87	+1.0
108,489	+		GFF2059	0.87	-1.1
108,489	+		GFF2059	0.87	-1.0
108,489	+		GFF2059	0.87	+0.2
108,489	+		GFF2059	0.87	-2.1
108,489	+		GFF2059	0.87	-0.3
108,489	+		GFF2059	0.87	-1.2
108,489	+		GFF2059	0.87	+0.2
108,489	+		GFF2059	0.87	+1.5
108,489	+		GFF2059	0.87	-0.1
108,489	+		GFF2059	0.87	-0.3
108,489	+		GFF2059	0.87	-0.4
108,489	+		GFF2059	0.87	-0.1
108,489	+		GFF2059	0.87	-0.6
108,489	+		GFF2059	0.87	-1.0
108,489	+		GFF2059	0.87	+1.0
108,489	+		GFF2059	0.87	+0.2
108,489	+		GFF2059	0.87	-0.8
108,489	+		GFF2059	0.87	+0.6
108,489	+		GFF2059	0.87	-0.8
108,489	+		GFF2059	0.87	+0.4
108,489	+		GFF2059	0.87	-0.2
108,489	+		GFF2059	0.87	+0.1
108,489	+		GFF2059	0.87	-2.4
108,489	+		GFF2059	0.87	-0.3
108,489	+		GFF2059	0.87	-0.3
108,489	+		GFF2059	0.87	+0.6
108,489	+		GFF2059	0.87	-0.1
108,489	+		GFF2059	0.87	+1.0
108,489	+		GFF2059	0.87	-0.8
108,489	+		GFF2059	0.87	-1.0
108,490	-		GFF2059	0.87	+0.2
108,490	-		GFF2059	0.87	+0.4
108,490	-		GFF2059	0.87	-0.0
108,490	-		GFF2059	0.87	-0.8
108,490	-		GFF2059	0.87	+0.1
108,490	-		GFF2059	0.87	-1.3
108,490	-		GFF2059	0.87	+0.2
108,490	-		GFF2059	0.87	-1.8
108,490	-		GFF2059	0.87	+0.0
108,490	-		GFF2059	0.87	-1.0
108,490	-		GFF2059	0.87	+0.5
108,490	-		GFF2059	0.87	+0.3
108,490	-		GFF2059	0.87	+0.2
108,490	-		GFF2059	0.87	+0.2
108,490	-		GFF2059	0.87	-0.1
108,490	-		GFF2059	0.87	-0.4
108,490	-		GFF2059	0.87	-0.1
108,490	-		GFF2059	0.87	+0.4
108,490	-		GFF2059	0.87	-0.1
108,490	-		GFF2059	0.87	-1.2
108,490	-		GFF2059	0.87	+1.9
108,490	-		GFF2059	0.87	-1.0
108,490	-		GFF2059	0.87	+0.2
108,490	-		GFF2059	0.87	-0.7
108,490	-		GFF2059	0.87	-1.7
108,490	-		GFF2059	0.87	+0.6
108,490	-		GFF2059	0.87	+1.1
108,490	-		GFF2059	0.87	+0.6
108,490	-		GFF2059	0.87	+0.3
108,490	-		GFF2059	0.87	-0.4
108,490	-		GFF2059	0.87	-0.1
108,490	-		GFF2059	0.87	-0.8
108,490	-		GFF2059	0.87	-0.6
108,490	-		GFF2059	0.87	-1.4
108,490	-		GFF2059	0.87	-1.7
108,490	-		GFF2059	0.87	-0.6
108,490	-		GFF2059	0.87	-0.8
108,490	-		GFF2059	0.87	-1.9
108,501	+		GFF2059	0.88	-0.4
108,501	+		GFF2059	0.88	-0.2
108,501	+		GFF2059	0.88	+0.8
108,501	+		GFF2059	0.88	-0.6
108,501	+		GFF2059	0.88	+1.4
108,502	-		GFF2059	0.88	-0.9
108,502	-		GFF2059	0.88	+0.5
108,502	-		GFF2059	0.88	-1.3
108,502	-		GFF2059	0.88	-0.8
108,502	-		GFF2059	0.88	+0.8
108,502	-		GFF2059	0.88	-0.4
108,502	-		GFF2059	0.88	-0.6
108,502	-		GFF2059	0.88	-0.3
108,502	-		GFF2059	0.88	-0.8
108,552	+				-0.1
108,552	+				-1.8
108,552	+				-0.5
108,552	+				-1.5
108,552	+				+0.3
108,552	+				-1.7
108,552	+				+0.3
108,552	+				+0.7
108,552	+				+0.3
108,553	-				-0.1
108,553	-				+0.1
108,553	-				+2.2
108,553	-				-0.0
108,553	-				-1.2
108,553	-				+0.4
108,553	-				-0.5
108,553	-				-0.5
108,553	-				+1.0
108,701	+				-0.0
108,701	+				-0.2
108,701	+				-0.0
108,701	+				-0.0
108,701	+				-0.5
108,701	+				-0.9
108,702	-				+0.5
108,702	-				+0.3
108,702	-				+0.6
108,702	-				-0.0
108,702	-				+0.2
108,702	-				-0.3
109,614	+		GFF2061	0.86	-0.7
109,755	+				-0.3
109,755	+				+1.4
109,755	+				+0.8
109,756	-				-0.2
109,801	+				+0.1
109,801	+				-0.1
109,801	+				-0.0
109,801	+				+0.1
109,802	-				-0.2
109,802	-				-0.7
109,802	-				-0.8
109,802	-				+1.4
109,802	-				-1.2
109,802	-				-0.8
109,843	+				-0.1
109,843	+				-1.5
109,843	+				-0.4
109,843	+				-0.6
109,843	+				-0.1
110,297	+				-1.0
110,297	+				-0.2
110,297	+				-1.6
110,297	+				-1.0
110,297	+				+1.1
110,297	+				-0.1
110,297	+				-0.3
110,297	+				+3.8
110,297	+				+0.1
110,298	-				-0.9
110,298	-				-0.5
110,298	-				-0.4
110,472	+		GFF2063	0.12	+0.8
110,472	+		GFF2063	0.12	+0.1
110,472	+		GFF2063	0.12	+0.6
110,472	+		GFF2063	0.12	-0.2