Strain Fitness in Variovorax sp. SCN45 around GFF2043

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF2042 and GFF2043 overlap by 4 nucleotidesGFF2043 and GFF2044 are separated by 108 nucleotidesGFF2044 and GFF2045 are separated by 15 nucleotides GFF2042 - Efflux ABC transporter, ATP-binding protein, at 90,411 to 91,406 GFF2042 GFF2043 - Efflux ABC transporter, permease protein, at 91,403 to 92,242 GFF2043 GFF2044 - Efflux ABC transporter, permease protein, at 92,351 to 93,133 GFF2044 GFF2045 - Peptide chain release factor 3, at 93,149 to 94,777 GFF2045 Position (kb) 91 92 93Strain fitness (log2 ratio) -2 -1 0 1 2at 90.447 kb on + strandat 90.447 kb on + strandat 90.448 kb on - strandat 90.448 kb on - strandat 90.448 kb on - strandat 90.577 kb on + strand, within GFF2042at 90.577 kb on + strand, within GFF2042at 90.577 kb on + strand, within GFF2042at 90.577 kb on + strand, within GFF2042at 90.577 kb on + strand, within GFF2042at 90.577 kb on + strand, within GFF2042at 90.578 kb on - strand, within GFF2042at 90.578 kb on - strand, within GFF2042at 90.578 kb on - strand, within GFF2042at 90.578 kb on - strand, within GFF2042at 90.578 kb on - strand, within GFF2042at 90.578 kb on - strand, within GFF2042at 90.578 kb on - strand, within GFF2042at 90.578 kb on - strand, within GFF2042at 90.578 kb on - strand, within GFF2042at 90.786 kb on + strand, within GFF2042at 90.786 kb on + strand, within GFF2042at 90.786 kb on + strand, within GFF2042at 90.786 kb on + strand, within GFF2042at 90.786 kb on + strand, within GFF2042at 90.786 kb on + strand, within GFF2042at 90.786 kb on + strand, within GFF2042at 90.787 kb on - strand, within GFF2042at 90.787 kb on - strand, within GFF2042at 90.787 kb on - strand, within GFF2042at 90.787 kb on - strand, within GFF2042at 90.787 kb on - strand, within GFF2042at 90.787 kb on - strand, within GFF2042at 91.377 kb on + strandat 91.377 kb on + strandat 91.378 kb on - strandat 91.378 kb on - strandat 91.378 kb on - strandat 91.433 kb on + strandat 91.433 kb on + strandat 91.433 kb on + strandat 91.433 kb on + strandat 91.433 kb on + strandat 91.434 kb on - strandat 91.434 kb on - strandat 91.434 kb on - strandat 91.553 kb on + strand, within GFF2043at 91.553 kb on + strand, within GFF2043at 91.607 kb on + strand, within GFF2043at 91.607 kb on + strand, within GFF2043at 91.607 kb on + strand, within GFF2043at 91.607 kb on + strand, within GFF2043at 91.607 kb on + strand, within GFF2043at 91.607 kb on + strand, within GFF2043at 91.607 kb on + strand, within GFF2043at 91.607 kb on + strand, within GFF2043at 91.607 kb on + strand, within GFF2043at 91.608 kb on - strand, within GFF2043at 91.608 kb on - strand, within GFF2043at 91.608 kb on - strand, within GFF2043at 91.608 kb on - strand, within GFF2043at 91.608 kb on - strand, within GFF2043at 91.608 kb on - strand, within GFF2043at 91.608 kb on - strand, within GFF2043at 91.608 kb on - strand, within GFF2043at 91.608 kb on - strand, within GFF2043at 91.608 kb on - strand, within GFF2043at 91.608 kb on - strand, within GFF2043at 91.608 kb on - strand, within GFF2043at 91.608 kb on - strand, within GFF2043at 91.608 kb on - strand, within GFF2043at 91.697 kb on + strand, within GFF2043at 91.697 kb on + strand, within GFF2043at 91.697 kb on + strand, within GFF2043at 91.698 kb on - strand, within GFF2043at 91.698 kb on - strand, within GFF2043at 91.698 kb on - strand, within GFF2043at 91.698 kb on - strand, within GFF2043at 91.698 kb on - strand, within GFF2043at 91.724 kb on + strand, within GFF2043at 91.724 kb on + strand, within GFF2043at 91.724 kb on + strand, within GFF2043at 91.724 kb on + strand, within GFF2043at 91.724 kb on + strand, within GFF2043at 91.937 kb on - strand, within GFF2043at 91.937 kb on - strand, within GFF2043at 91.937 kb on - strand, within GFF2043at 92.108 kb on + strand, within GFF2043at 92.108 kb on + strand, within GFF2043at 92.108 kb on + strand, within GFF2043at 92.108 kb on + strand, within GFF2043at 92.108 kb on + strand, within GFF2043at 92.108 kb on + strand, within GFF2043at 92.109 kb on - strand, within GFF2043at 92.109 kb on - strand, within GFF2043at 92.109 kb on - strand, within GFF2043at 92.109 kb on - strand, within GFF2043at 92.346 kb on + strandat 92.347 kb on - strandat 92.347 kb on - strandat 92.522 kb on + strand, within GFF2044at 92.522 kb on + strand, within GFF2044at 92.523 kb on - strand, within GFF2044at 92.583 kb on + strand, within GFF2044at 92.882 kb on + strand, within GFF2044at 92.882 kb on + strand, within GFF2044at 92.883 kb on - strand, within GFF2044at 92.883 kb on - strand, within GFF2044at 92.883 kb on - strand, within GFF2044at 92.883 kb on - strand, within GFF2044at 92.906 kb on + strand, within GFF2044at 92.921 kb on + strand, within GFF2044at 92.921 kb on + strand, within GFF2044at 92.922 kb on - strand, within GFF2044at 92.922 kb on - strand, within GFF2044at 92.922 kb on - strand, within GFF2044at 92.922 kb on - strand, within GFF2044at 92.922 kb on - strand, within GFF2044at 92.978 kb on + strand, within GFF2044at 92.979 kb on - strand, within GFF2044at 92.979 kb on - strand, within GFF2044at 92.979 kb on - strand, within GFF2044at 92.979 kb on - strand, within GFF2044at 92.981 kb on + strand, within GFF2044at 92.982 kb on - strand, within GFF2044at 93.113 kb on + strandat 93.113 kb on + strandat 93.114 kb on - strandat 93.114 kb on - strandat 93.114 kb on - strandat 93.114 kb on - strandat 93.114 kb on - strandat 93.114 kb on - strandat 93.241 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
remove
90,447 + +0.0
90,447 + +0.6
90,448 - +0.4
90,448 - +0.9
90,448 - +0.4
90,577 + GFF2042 0.17 +0.2
90,577 + GFF2042 0.17 -0.2
90,577 + GFF2042 0.17 +0.6
90,577 + GFF2042 0.17 -0.1
90,577 + GFF2042 0.17 -2.5
90,577 + GFF2042 0.17 -0.4
90,578 - GFF2042 0.17 -1.5
90,578 - GFF2042 0.17 -1.0
90,578 - GFF2042 0.17 -0.9
90,578 - GFF2042 0.17 +0.0
90,578 - GFF2042 0.17 +0.9
90,578 - GFF2042 0.17 -1.2
90,578 - GFF2042 0.17 -0.9
90,578 - GFF2042 0.17 -1.7
90,578 - GFF2042 0.17 +0.2
90,786 + GFF2042 0.38 +1.1
90,786 + GFF2042 0.38 +0.2
90,786 + GFF2042 0.38 +0.8
90,786 + GFF2042 0.38 +0.3
90,786 + GFF2042 0.38 +0.9
90,786 + GFF2042 0.38 +0.2
90,786 + GFF2042 0.38 -1.2
90,787 - GFF2042 0.38 +1.8
90,787 - GFF2042 0.38 +0.5
90,787 - GFF2042 0.38 -0.2
90,787 - GFF2042 0.38 +0.0
90,787 - GFF2042 0.38 -0.4
90,787 - GFF2042 0.38 -0.9
91,377 + -1.7
91,377 + -1.3
91,378 - +1.9
91,378 - +0.2
91,378 - -0.2
91,433 + +1.8
91,433 + -0.5
91,433 + -0.2
91,433 + +1.0
91,433 + -0.7
91,434 - -0.2
91,434 - -1.4
91,434 - +0.8
91,553 + GFF2043 0.18 +1.4
91,553 + GFF2043 0.18 -0.1
91,607 + GFF2043 0.24 -0.8
91,607 + GFF2043 0.24 -0.3
91,607 + GFF2043 0.24 +0.1
91,607 + GFF2043 0.24 +0.4
91,607 + GFF2043 0.24 +1.3
91,607 + GFF2043 0.24 -0.2
91,607 + GFF2043 0.24 -0.3
91,607 + GFF2043 0.24 -1.0
91,607 + GFF2043 0.24 +2.1
91,608 - GFF2043 0.24 +1.4
91,608 - GFF2043 0.24 +0.4
91,608 - GFF2043 0.24 +0.6
91,608 - GFF2043 0.24 -0.2
91,608 - GFF2043 0.24 +1.6
91,608 - GFF2043 0.24 +0.1
91,608 - GFF2043 0.24 -0.2
91,608 - GFF2043 0.24 -0.5
91,608 - GFF2043 0.24 -0.1
91,608 - GFF2043 0.24 -0.0
91,608 - GFF2043 0.24 +0.5
91,608 - GFF2043 0.24 +0.3
91,608 - GFF2043 0.24 -0.0
91,608 - GFF2043 0.24 -0.1
91,697 + GFF2043 0.35 +0.2
91,697 + GFF2043 0.35 -1.4
91,697 + GFF2043 0.35 -1.4
91,698 - GFF2043 0.35 +0.7
91,698 - GFF2043 0.35 -1.2
91,698 - GFF2043 0.35 -0.0
91,698 - GFF2043 0.35 +0.4
91,698 - GFF2043 0.35 -1.5
91,724 + GFF2043 0.38 -0.0
91,724 + GFF2043 0.38 -0.5
91,724 + GFF2043 0.38 +0.5
91,724 + GFF2043 0.38 +1.6
91,724 + GFF2043 0.38 +1.5
91,937 - GFF2043 0.64 +0.7
91,937 - GFF2043 0.64 -1.0
91,937 - GFF2043 0.64 -1.2
92,108 + GFF2043 0.84 -1.5
92,108 + GFF2043 0.84 +0.8
92,108 + GFF2043 0.84 -0.6
92,108 + GFF2043 0.84 -0.6
92,108 + GFF2043 0.84 -0.5
92,108 + GFF2043 0.84 -0.4
92,109 - GFF2043 0.84 -0.5
92,109 - GFF2043 0.84 -0.9
92,109 - GFF2043 0.84 -0.3
92,109 - GFF2043 0.84 +0.2
92,346 + -0.7
92,347 - +0.1
92,347 - -0.6
92,522 + GFF2044 0.22 -2.3
92,522 + GFF2044 0.22 -0.4
92,523 - GFF2044 0.22 -1.2
92,583 + GFF2044 0.30 +0.4
92,882 + GFF2044 0.68 -0.2
92,882 + GFF2044 0.68 -0.0
92,883 - GFF2044 0.68 +0.6
92,883 - GFF2044 0.68 +0.4
92,883 - GFF2044 0.68 +1.2
92,883 - GFF2044 0.68 +0.7
92,906 + GFF2044 0.71 +1.2
92,921 + GFF2044 0.73 -1.4
92,921 + GFF2044 0.73 -0.8
92,922 - GFF2044 0.73 -1.5
92,922 - GFF2044 0.73 -0.5
92,922 - GFF2044 0.73 +0.6
92,922 - GFF2044 0.73 +1.8
92,922 - GFF2044 0.73 -1.4
92,978 + GFF2044 0.80 +0.1
92,979 - GFF2044 0.80 -0.1
92,979 - GFF2044 0.80 -1.0
92,979 - GFF2044 0.80 -1.0
92,979 - GFF2044 0.80 +0.2
92,981 + GFF2044 0.80 -0.4
92,982 - GFF2044 0.81 -0.0
93,113 + -0.5
93,113 + -0.4
93,114 - -2.1
93,114 - -0.2
93,114 - -2.0
93,114 - -0.4
93,114 - +0.2
93,114 - -1.7
93,241 - +0.3

Or see this region's nucleotide sequence