Strain Fitness in Variovorax sp. SCN45 around GFF1992

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF1990 and GFF1991 are separated by 30 nucleotidesGFF1991 and GFF1992 are separated by 40 nucleotidesGFF1992 and GFF1993 are separated by 59 nucleotides GFF1990 - Transcriptional regulator, MerR family, at 32,063 to 32,458 GFF1990 GFF1991 - Carbonic anhydrase, beta class (EC 4.2.1.1), at 32,489 to 33,229 GFF1991 GFF1992 - Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-), at 33,270 to 35,090 GFF1992 GFF1993 - 3-ketoacyl-CoA thiolase (EC 2.3.1.16), at 35,150 to 36,334 GFF1993 Position (kb) 33 34 35 36Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 32.279 kb on + strand, within GFF1990at 32.279 kb on + strand, within GFF1990at 32.279 kb on + strand, within GFF1990at 32.279 kb on + strand, within GFF1990at 32.279 kb on + strand, within GFF1990at 32.279 kb on + strand, within GFF1990at 32.280 kb on - strand, within GFF1990at 32.280 kb on - strand, within GFF1990at 32.280 kb on - strand, within GFF1990at 32.280 kb on - strand, within GFF1990at 32.280 kb on - strand, within GFF1990at 32.280 kb on - strand, within GFF1990at 32.280 kb on - strand, within GFF1990at 32.280 kb on - strand, within GFF1990at 32.280 kb on - strand, within GFF1990at 32.280 kb on - strand, within GFF1990at 32.280 kb on - strand, within GFF1990at 32.280 kb on - strand, within GFF1990at 32.280 kb on - strand, within GFF1990at 32.352 kb on + strand, within GFF1990at 32.352 kb on + strand, within GFF1990at 32.352 kb on + strand, within GFF1990at 32.353 kb on - strand, within GFF1990at 32.353 kb on - strand, within GFF1990at 32.480 kb on + strandat 32.480 kb on + strandat 32.480 kb on + strandat 32.488 kb on + strandat 32.488 kb on + strandat 33.303 kb on + strandat 33.303 kb on + strandat 33.303 kb on + strandat 33.304 kb on - strandat 33.304 kb on - strandat 33.444 kb on + strandat 33.444 kb on + strandat 33.444 kb on + strandat 33.445 kb on - strandat 33.445 kb on - strandat 33.540 kb on + strand, within GFF1992at 33.540 kb on + strand, within GFF1992at 33.540 kb on + strand, within GFF1992at 33.540 kb on + strand, within GFF1992at 33.541 kb on - strand, within GFF1992at 33.541 kb on - strand, within GFF1992at 33.541 kb on - strand, within GFF1992at 33.541 kb on - strand, within GFF1992at 33.541 kb on - strand, within GFF1992at 33.627 kb on + strand, within GFF1992at 33.628 kb on - strand, within GFF1992at 33.628 kb on - strand, within GFF1992at 33.675 kb on + strand, within GFF1992at 33.675 kb on + strand, within GFF1992at 33.675 kb on + strand, within GFF1992at 33.675 kb on + strand, within GFF1992at 33.676 kb on - strand, within GFF1992at 33.676 kb on - strand, within GFF1992at 33.676 kb on - strand, within GFF1992at 33.702 kb on + strand, within GFF1992at 33.702 kb on + strand, within GFF1992at 33.703 kb on - strand, within GFF1992at 33.703 kb on - strand, within GFF1992at 33.703 kb on - strand, within GFF1992at 33.711 kb on + strand, within GFF1992at 33.711 kb on + strand, within GFF1992at 33.712 kb on - strand, within GFF1992at 33.712 kb on - strand, within GFF1992at 33.714 kb on + strand, within GFF1992at 33.715 kb on - strand, within GFF1992at 33.715 kb on - strand, within GFF1992at 33.715 kb on - strand, within GFF1992at 33.715 kb on - strand, within GFF1992at 33.912 kb on + strand, within GFF1992at 33.912 kb on + strand, within GFF1992at 33.913 kb on - strand, within GFF1992at 33.913 kb on - strand, within GFF1992at 33.913 kb on - strand, within GFF1992at 33.967 kb on + strand, within GFF1992at 33.967 kb on + strand, within GFF1992at 33.967 kb on + strand, within GFF1992at 33.968 kb on - strand, within GFF1992at 33.993 kb on + strand, within GFF1992at 33.993 kb on + strand, within GFF1992at 33.993 kb on + strand, within GFF1992at 34.056 kb on + strand, within GFF1992at 34.056 kb on + strand, within GFF1992at 34.057 kb on - strand, within GFF1992at 34.057 kb on - strand, within GFF1992at 34.140 kb on + strand, within GFF1992at 34.140 kb on + strand, within GFF1992at 34.140 kb on + strand, within GFF1992at 34.140 kb on + strand, within GFF1992at 34.140 kb on + strand, within GFF1992at 34.140 kb on + strand, within GFF1992at 34.141 kb on - strand, within GFF1992at 34.182 kb on + strand, within GFF1992at 34.209 kb on + strand, within GFF1992at 34.314 kb on + strand, within GFF1992at 34.359 kb on + strand, within GFF1992at 34.359 kb on + strand, within GFF1992at 34.359 kb on + strand, within GFF1992at 34.359 kb on + strand, within GFF1992at 34.359 kb on + strand, within GFF1992at 34.359 kb on + strand, within GFF1992at 34.359 kb on + strand, within GFF1992at 34.359 kb on + strand, within GFF1992at 34.359 kb on + strand, within GFF1992at 34.359 kb on + strand, within GFF1992at 34.359 kb on + strand, within GFF1992at 34.359 kb on + strand, within GFF1992at 34.360 kb on - strand, within GFF1992at 34.360 kb on - strand, within GFF1992at 34.360 kb on - strand, within GFF1992at 34.360 kb on - strand, within GFF1992at 34.360 kb on - strand, within GFF1992at 34.360 kb on - strand, within GFF1992at 34.360 kb on - strand, within GFF1992at 34.360 kb on - strand, within GFF1992at 34.360 kb on - strand, within GFF1992at 34.548 kb on + strand, within GFF1992at 34.548 kb on + strand, within GFF1992at 34.549 kb on - strand, within GFF1992at 34.581 kb on + strand, within GFF1992at 34.581 kb on + strand, within GFF1992at 34.582 kb on - strand, within GFF1992at 34.582 kb on - strand, within GFF1992at 34.582 kb on - strand, within GFF1992at 34.582 kb on - strand, within GFF1992at 34.674 kb on + strand, within GFF1992at 34.674 kb on + strand, within GFF1992at 34.675 kb on - strand, within GFF1992at 34.675 kb on - strand, within GFF1992at 34.773 kb on + strand, within GFF1992at 34.773 kb on + strand, within GFF1992at 34.774 kb on - strand, within GFF1992at 34.794 kb on + strand, within GFF1992at 34.794 kb on + strand, within GFF1992at 34.794 kb on + strand, within GFF1992at 34.794 kb on + strand, within GFF1992at 34.795 kb on - strand, within GFF1992at 34.795 kb on - strand, within GFF1992at 34.795 kb on - strand, within GFF1992at 34.869 kb on + strand, within GFF1992at 34.869 kb on + strand, within GFF1992at 34.869 kb on + strand, within GFF1992at 34.870 kb on - strand, within GFF1992at 35.363 kb on + strand, within GFF1993at 35.363 kb on + strand, within GFF1993at 35.364 kb on - strand, within GFF1993at 35.364 kb on - strand, within GFF1993at 35.364 kb on - strand, within GFF1993at 35.364 kb on - strand, within GFF1993at 35.519 kb on + strand, within GFF1993at 35.520 kb on - strand, within GFF1993at 35.606 kb on + strand, within GFF1993at 35.607 kb on - strand, within GFF1993at 35.657 kb on + strand, within GFF1993at 35.658 kb on - strand, within GFF1993at 35.658 kb on - strand, within GFF1993at 35.658 kb on - strand, within GFF1993at 35.658 kb on - strand, within GFF1993at 35.658 kb on - strand, within GFF1993at 35.658 kb on - strand, within GFF1993

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
remove
32,279 + GFF1990 0.55 -0.1
32,279 + GFF1990 0.55 -0.5
32,279 + GFF1990 0.55 +0.1
32,279 + GFF1990 0.55 -0.1
32,279 + GFF1990 0.55 +0.1
32,279 + GFF1990 0.55 -1.5
32,280 - GFF1990 0.55 -0.3
32,280 - GFF1990 0.55 +0.2
32,280 - GFF1990 0.55 -1.2
32,280 - GFF1990 0.55 +1.3
32,280 - GFF1990 0.55 -0.2
32,280 - GFF1990 0.55 -0.5
32,280 - GFF1990 0.55 +0.1
32,280 - GFF1990 0.55 -3.5
32,280 - GFF1990 0.55 -0.7
32,280 - GFF1990 0.55 +0.6
32,280 - GFF1990 0.55 -0.0
32,280 - GFF1990 0.55 +0.0
32,280 - GFF1990 0.55 -0.2
32,352 + GFF1990 0.73 +0.6
32,352 + GFF1990 0.73 -0.2
32,352 + GFF1990 0.73 +0.4
32,353 - GFF1990 0.73 -0.3
32,353 - GFF1990 0.73 -1.0
32,480 + -1.1
32,480 + +0.5
32,480 + -0.5
32,488 + +0.3
32,488 + +0.4
33,303 + -0.5
33,303 + -0.8
33,303 + -0.0
33,304 - -1.0
33,304 - -0.3
33,444 + -1.0
33,444 + -0.7
33,444 + -0.3
33,445 - -0.0
33,445 - +0.2
33,540 + GFF1992 0.15 +0.9
33,540 + GFF1992 0.15 -0.4
33,540 + GFF1992 0.15 -0.9
33,540 + GFF1992 0.15 -2.1
33,541 - GFF1992 0.15 +0.2
33,541 - GFF1992 0.15 -0.5
33,541 - GFF1992 0.15 +0.0
33,541 - GFF1992 0.15 -0.4
33,541 - GFF1992 0.15 -0.6
33,627 + GFF1992 0.20 -0.6
33,628 - GFF1992 0.20 +0.1
33,628 - GFF1992 0.20 -0.0
33,675 + GFF1992 0.22 -0.7
33,675 + GFF1992 0.22 +0.1
33,675 + GFF1992 0.22 -1.9
33,675 + GFF1992 0.22 -0.3
33,676 - GFF1992 0.22 -0.2
33,676 - GFF1992 0.22 -2.4
33,676 - GFF1992 0.22 -1.8
33,702 + GFF1992 0.24 +0.8
33,702 + GFF1992 0.24 -0.1
33,703 - GFF1992 0.24 +2.1
33,703 - GFF1992 0.24 -0.0
33,703 - GFF1992 0.24 +0.0
33,711 + GFF1992 0.24 +0.9
33,711 + GFF1992 0.24 -0.6
33,712 - GFF1992 0.24 -1.7
33,712 - GFF1992 0.24 -0.8
33,714 + GFF1992 0.24 +0.1
33,715 - GFF1992 0.24 +0.2
33,715 - GFF1992 0.24 -1.6
33,715 - GFF1992 0.24 -0.9
33,715 - GFF1992 0.24 -0.4
33,912 + GFF1992 0.35 -1.0
33,912 + GFF1992 0.35 +1.0
33,913 - GFF1992 0.35 -0.2
33,913 - GFF1992 0.35 -1.0
33,913 - GFF1992 0.35 +1.2
33,967 + GFF1992 0.38 -0.8
33,967 + GFF1992 0.38 +0.6
33,967 + GFF1992 0.38 +2.8
33,968 - GFF1992 0.38 +0.6
33,993 + GFF1992 0.40 -1.0
33,993 + GFF1992 0.40 -1.2
33,993 + GFF1992 0.40 -0.5
34,056 + GFF1992 0.43 +0.2
34,056 + GFF1992 0.43 -0.1
34,057 - GFF1992 0.43 -0.8
34,057 - GFF1992 0.43 -0.2
34,140 + GFF1992 0.48 -0.3
34,140 + GFF1992 0.48 +1.0
34,140 + GFF1992 0.48 -0.7
34,140 + GFF1992 0.48 -0.1
34,140 + GFF1992 0.48 +0.4
34,140 + GFF1992 0.48 -1.7
34,141 - GFF1992 0.48 -0.1
34,182 + GFF1992 0.50 -0.7
34,209 + GFF1992 0.52 -0.5
34,314 + GFF1992 0.57 -0.1
34,359 + GFF1992 0.60 -0.5
34,359 + GFF1992 0.60 +1.0
34,359 + GFF1992 0.60 -2.7
34,359 + GFF1992 0.60 +0.9
34,359 + GFF1992 0.60 -0.5
34,359 + GFF1992 0.60 -1.0
34,359 + GFF1992 0.60 -0.2
34,359 + GFF1992 0.60 -2.1
34,359 + GFF1992 0.60 +0.2
34,359 + GFF1992 0.60 -1.5
34,359 + GFF1992 0.60 -1.4
34,359 + GFF1992 0.60 -0.3
34,360 - GFF1992 0.60 +0.8
34,360 - GFF1992 0.60 +0.4
34,360 - GFF1992 0.60 -0.1
34,360 - GFF1992 0.60 +0.2
34,360 - GFF1992 0.60 -0.5
34,360 - GFF1992 0.60 -0.8
34,360 - GFF1992 0.60 +0.2
34,360 - GFF1992 0.60 -1.0
34,360 - GFF1992 0.60 -1.5
34,548 + GFF1992 0.70 +0.6
34,548 + GFF1992 0.70 -0.2
34,549 - GFF1992 0.70 -0.1
34,581 + GFF1992 0.72 -0.3
34,581 + GFF1992 0.72 -0.3
34,582 - GFF1992 0.72 -0.5
34,582 - GFF1992 0.72 +1.2
34,582 - GFF1992 0.72 -0.2
34,582 - GFF1992 0.72 +0.0
34,674 + GFF1992 0.77 -0.9
34,674 + GFF1992 0.77 -0.2
34,675 - GFF1992 0.77 +0.7
34,675 - GFF1992 0.77 -1.5
34,773 + GFF1992 0.83 -1.1
34,773 + GFF1992 0.83 +0.4
34,774 - GFF1992 0.83 -1.2
34,794 + GFF1992 0.84 +0.4
34,794 + GFF1992 0.84 -0.1
34,794 + GFF1992 0.84 -0.5
34,794 + GFF1992 0.84 -1.6
34,795 - GFF1992 0.84 +0.7
34,795 - GFF1992 0.84 -0.4
34,795 - GFF1992 0.84 -0.5
34,869 + GFF1992 0.88 -2.0
34,869 + GFF1992 0.88 +0.4
34,869 + GFF1992 0.88 -0.2
34,870 - GFF1992 0.88 -0.3
35,363 + GFF1993 0.18 +0.4
35,363 + GFF1993 0.18 -1.0
35,364 - GFF1993 0.18 -0.6
35,364 - GFF1993 0.18 -0.2
35,364 - GFF1993 0.18 -0.8
35,364 - GFF1993 0.18 -0.4
35,519 + GFF1993 0.31 -0.6
35,520 - GFF1993 0.31 -0.4
35,606 + GFF1993 0.38 -3.8
35,607 - GFF1993 0.39 -0.2
35,657 + GFF1993 0.43 -0.3
35,658 - GFF1993 0.43 -0.7
35,658 - GFF1993 0.43 +0.1
35,658 - GFF1993 0.43 -0.7
35,658 - GFF1993 0.43 -0.4
35,658 - GFF1993 0.43 +0.8
35,658 - GFF1993 0.43 -0.5

Or see this region's nucleotide sequence