Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1951 and GFF1952 are separated by 44 nucleotides GFF1952 and GFF1953 overlap by 4 nucleotides GFF1953 and GFF1954 overlap by 4 nucleotides
GFF1951 - no description, at 645,419 to 645,769
GFF1951
GFF1952 - Metallophosphoesterase, at 645,814 to 646,527
GFF1952
GFF1953 - hypothetical protein, at 646,524 to 647,171
GFF1953
GFF1954 - no description, at 647,168 to 648,433
GFF1954
Position (kb) 646
647
648 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 645.570 kb on - strand, within GFF1951 at 645.570 kb on - strand, within GFF1951 at 645.768 kb on - strand at 645.768 kb on - strand at 645.896 kb on + strand, within GFF1952 at 645.896 kb on + strand, within GFF1952 at 645.896 kb on + strand, within GFF1952 at 645.993 kb on + strand, within GFF1952 at 645.993 kb on + strand, within GFF1952 at 645.993 kb on + strand, within GFF1952 at 645.994 kb on - strand, within GFF1952 at 645.994 kb on - strand, within GFF1952 at 646.010 kb on - strand, within GFF1952 at 646.016 kb on + strand, within GFF1952 at 646.115 kb on + strand, within GFF1952 at 646.249 kb on - strand, within GFF1952 at 646.249 kb on - strand, within GFF1952 at 646.414 kb on + strand, within GFF1952 at 646.414 kb on + strand, within GFF1952 at 646.414 kb on + strand, within GFF1952 at 646.415 kb on - strand, within GFF1952 at 646.415 kb on - strand, within GFF1952 at 646.415 kb on - strand, within GFF1952 at 646.415 kb on - strand, within GFF1952 at 646.415 kb on - strand, within GFF1952 at 646.520 kb on + strand at 646.520 kb on + strand at 646.536 kb on + strand at 646.536 kb on + strand at 646.536 kb on + strand at 646.536 kb on + strand at 646.536 kb on + strand at 646.536 kb on + strand at 646.537 kb on - strand at 646.568 kb on + strand at 646.622 kb on + strand, within GFF1953 at 646.622 kb on + strand, within GFF1953 at 646.622 kb on + strand, within GFF1953 at 646.628 kb on + strand, within GFF1953 at 646.628 kb on + strand, within GFF1953 at 646.629 kb on - strand, within GFF1953 at 646.705 kb on - strand, within GFF1953 at 646.705 kb on - strand, within GFF1953 at 646.711 kb on + strand, within GFF1953 at 646.770 kb on + strand, within GFF1953 at 646.771 kb on - strand, within GFF1953 at 646.771 kb on - strand, within GFF1953 at 646.854 kb on - strand, within GFF1953 at 647.038 kb on + strand, within GFF1953 at 647.099 kb on + strand, within GFF1953 at 647.099 kb on + strand, within GFF1953 at 647.099 kb on + strand, within GFF1953 at 647.099 kb on + strand, within GFF1953 at 647.100 kb on - strand, within GFF1953 at 647.100 kb on - strand, within GFF1953 at 647.100 kb on - strand, within GFF1953 at 647.285 kb on + strand at 647.286 kb on - strand at 647.392 kb on - strand, within GFF1954 at 647.488 kb on - strand, within GFF1954 at 647.865 kb on + strand, within GFF1954 at 647.890 kb on - strand, within GFF1954 at 647.890 kb on - strand, within GFF1954 at 647.955 kb on - strand, within GFF1954
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL remove 645,570 - GFF1951 0.43 -0.8 645,570 - GFF1951 0.43 -0.1 645,768 - -1.0 645,768 - -0.1 645,896 + GFF1952 0.11 -0.2 645,896 + GFF1952 0.11 -1.0 645,896 + GFF1952 0.11 -0.7 645,993 + GFF1952 0.25 -0.1 645,993 + GFF1952 0.25 -0.7 645,993 + GFF1952 0.25 +0.9 645,994 - GFF1952 0.25 -0.8 645,994 - GFF1952 0.25 +0.1 646,010 - GFF1952 0.27 +0.7 646,016 + GFF1952 0.28 -1.4 646,115 + GFF1952 0.42 -0.6 646,249 - GFF1952 0.61 +0.1 646,249 - GFF1952 0.61 +1.7 646,414 + GFF1952 0.84 -1.1 646,414 + GFF1952 0.84 -2.4 646,414 + GFF1952 0.84 -0.0 646,415 - GFF1952 0.84 -0.6 646,415 - GFF1952 0.84 -2.0 646,415 - GFF1952 0.84 +0.3 646,415 - GFF1952 0.84 -0.4 646,415 - GFF1952 0.84 +1.4 646,520 + -1.6 646,520 + +0.6 646,536 + -0.3 646,536 + +1.1 646,536 + +0.6 646,536 + -0.6 646,536 + +0.7 646,536 + -0.6 646,537 - -0.3 646,568 + +0.4 646,622 + GFF1953 0.15 +0.6 646,622 + GFF1953 0.15 -2.0 646,622 + GFF1953 0.15 +1.3 646,628 + GFF1953 0.16 +2.0 646,628 + GFF1953 0.16 +0.4 646,629 - GFF1953 0.16 +1.3 646,705 - GFF1953 0.28 -1.0 646,705 - GFF1953 0.28 +1.1 646,711 + GFF1953 0.29 +0.8 646,770 + GFF1953 0.38 -0.5 646,771 - GFF1953 0.38 -0.0 646,771 - GFF1953 0.38 -1.4 646,854 - GFF1953 0.51 +3.3 647,038 + GFF1953 0.79 +0.2 647,099 + GFF1953 0.89 -0.8 647,099 + GFF1953 0.89 +0.2 647,099 + GFF1953 0.89 +0.2 647,099 + GFF1953 0.89 -0.3 647,100 - GFF1953 0.89 +0.7 647,100 - GFF1953 0.89 +0.2 647,100 - GFF1953 0.89 -0.6 647,285 + +0.4 647,286 - +0.2 647,392 - GFF1954 0.18 +0.7 647,488 - GFF1954 0.25 -0.2 647,865 + GFF1954 0.55 +0.2 647,890 - GFF1954 0.57 +0.2 647,890 - GFF1954 0.57 -1.1 647,955 - GFF1954 0.62 +1.7
Or see this region's nucleotide sequence