Strain Fitness in Variovorax sp. SCN45 around GFF1776

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1774 and GFF1775 overlap by 4 nucleotidesGFF1775 and GFF1776 are separated by 28 nucleotidesGFF1776 and GFF1777 are separated by 24 nucleotides GFF1774 - Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system, at 436,760 to 437,227 GFF1774 GFF1775 - no description, at 437,224 to 437,718 GFF1775 GFF1776 - OsmC-like protein Pfl_1628, at 437,747 to 438,148 GFF1776 GFF1777 - Beta-lactamase class C-like and penicillin binding proteins (PBPs) superfamily, at 438,173 to 439,354 GFF1777 Position (kb) 437 438 439Strain fitness (log2 ratio) -2 -1 0 1 2at 436.819 kb on + strand, within GFF1774at 436.819 kb on + strand, within GFF1774at 437.078 kb on + strand, within GFF1774at 437.079 kb on - strand, within GFF1774at 437.079 kb on - strand, within GFF1774at 437.174 kb on + strand, within GFF1774at 437.174 kb on + strand, within GFF1774at 437.174 kb on + strand, within GFF1774at 437.174 kb on + strand, within GFF1774at 437.174 kb on + strand, within GFF1774at 437.174 kb on + strand, within GFF1774at 437.174 kb on + strand, within GFF1774at 437.174 kb on + strand, within GFF1774at 437.175 kb on - strand, within GFF1774at 437.175 kb on - strand, within GFF1774at 437.175 kb on - strand, within GFF1774at 437.175 kb on - strand, within GFF1774at 437.175 kb on - strand, within GFF1774at 437.175 kb on - strand, within GFF1774at 437.175 kb on - strand, within GFF1774at 437.390 kb on - strand, within GFF1775at 437.621 kb on - strand, within GFF1775at 437.621 kb on - strand, within GFF1775at 437.695 kb on + strandat 437.695 kb on + strandat 437.696 kb on - strandat 437.696 kb on - strandat 437.879 kb on + strand, within GFF1776at 437.880 kb on - strand, within GFF1776at 437.924 kb on + strand, within GFF1776at 437.924 kb on + strand, within GFF1776at 437.925 kb on - strand, within GFF1776at 437.925 kb on - strand, within GFF1776at 438.267 kb on + strandat 438.268 kb on - strandat 438.268 kb on - strandat 438.268 kb on - strandat 438.268 kb on - strandat 438.288 kb on + strandat 438.288 kb on + strandat 438.289 kb on - strandat 438.363 kb on + strand, within GFF1777at 438.363 kb on + strand, within GFF1777at 438.363 kb on + strand, within GFF1777at 438.364 kb on - strand, within GFF1777at 438.364 kb on - strand, within GFF1777at 438.364 kb on - strand, within GFF1777at 438.371 kb on + strand, within GFF1777at 438.371 kb on + strand, within GFF1777at 438.371 kb on + strand, within GFF1777at 438.371 kb on + strand, within GFF1777at 438.371 kb on + strand, within GFF1777at 438.371 kb on + strand, within GFF1777at 438.372 kb on - strand, within GFF1777at 438.372 kb on - strand, within GFF1777at 438.372 kb on - strand, within GFF1777at 438.385 kb on - strand, within GFF1777at 438.385 kb on - strand, within GFF1777at 438.405 kb on + strand, within GFF1777at 438.537 kb on + strand, within GFF1777at 438.549 kb on + strand, within GFF1777at 438.549 kb on + strand, within GFF1777at 438.550 kb on - strand, within GFF1777at 438.739 kb on + strand, within GFF1777at 438.740 kb on - strand, within GFF1777at 438.740 kb on - strand, within GFF1777at 438.741 kb on + strand, within GFF1777at 438.741 kb on + strand, within GFF1777at 438.741 kb on + strand, within GFF1777at 438.742 kb on - strand, within GFF1777at 438.742 kb on - strand, within GFF1777at 438.742 kb on - strand, within GFF1777at 438.742 kb on - strand, within GFF1777at 438.816 kb on + strand, within GFF1777at 438.817 kb on - strand, within GFF1777at 439.084 kb on + strand, within GFF1777

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
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436,819 + GFF1774 0.13 -0.8
436,819 + GFF1774 0.13 +0.0
437,078 + GFF1774 0.68 -0.1
437,079 - GFF1774 0.68 +0.2
437,079 - GFF1774 0.68 -1.8
437,174 + GFF1774 0.88 -1.1
437,174 + GFF1774 0.88 -0.1
437,174 + GFF1774 0.88 +0.1
437,174 + GFF1774 0.88 +1.2
437,174 + GFF1774 0.88 +0.4
437,174 + GFF1774 0.88 -1.6
437,174 + GFF1774 0.88 -1.0
437,174 + GFF1774 0.88 -0.1
437,175 - GFF1774 0.89 +0.1
437,175 - GFF1774 0.89 +0.7
437,175 - GFF1774 0.89 -1.1
437,175 - GFF1774 0.89 -1.8
437,175 - GFF1774 0.89 +0.2
437,175 - GFF1774 0.89 -0.6
437,175 - GFF1774 0.89 -0.7
437,390 - GFF1775 0.34 -1.0
437,621 - GFF1775 0.80 -1.2
437,621 - GFF1775 0.80 -1.4
437,695 + +0.8
437,695 + +1.1
437,696 - -2.2
437,696 - +0.2
437,879 + GFF1776 0.33 -1.8
437,880 - GFF1776 0.33 -2.1
437,924 + GFF1776 0.44 -0.8
437,924 + GFF1776 0.44 -1.7
437,925 - GFF1776 0.44 +0.1
437,925 - GFF1776 0.44 -0.4
438,267 + -0.4
438,268 - +1.5
438,268 - -0.7
438,268 - -2.0
438,268 - -0.5
438,288 + -0.2
438,288 + +0.8
438,289 - -1.2
438,363 + GFF1777 0.16 -1.5
438,363 + GFF1777 0.16 +1.7
438,363 + GFF1777 0.16 +0.7
438,364 - GFF1777 0.16 -0.6
438,364 - GFF1777 0.16 +1.1
438,364 - GFF1777 0.16 -0.2
438,371 + GFF1777 0.17 +1.5
438,371 + GFF1777 0.17 +1.2
438,371 + GFF1777 0.17 -0.0
438,371 + GFF1777 0.17 -0.9
438,371 + GFF1777 0.17 -0.8
438,371 + GFF1777 0.17 -0.7
438,372 - GFF1777 0.17 -0.3
438,372 - GFF1777 0.17 +0.3
438,372 - GFF1777 0.17 -0.7
438,385 - GFF1777 0.18 +1.0
438,385 - GFF1777 0.18 +0.6
438,405 + GFF1777 0.20 -1.4
438,537 + GFF1777 0.31 -0.6
438,549 + GFF1777 0.32 +0.4
438,549 + GFF1777 0.32 +0.8
438,550 - GFF1777 0.32 -0.1
438,739 + GFF1777 0.48 -0.8
438,740 - GFF1777 0.48 +0.4
438,740 - GFF1777 0.48 +0.1
438,741 + GFF1777 0.48 +1.0
438,741 + GFF1777 0.48 +0.8
438,741 + GFF1777 0.48 +0.7
438,742 - GFF1777 0.48 +2.7
438,742 - GFF1777 0.48 +0.7
438,742 - GFF1777 0.48 -0.8
438,742 - GFF1777 0.48 +0.2
438,816 + GFF1777 0.54 -2.1
438,817 - GFF1777 0.54 +0.3
439,084 + GFF1777 0.77 -0.4

Or see this region's nucleotide sequence