Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1717 and GFF1718 are separated by 157 nucleotides GFF1718 and GFF1719 are separated by 0 nucleotides
GFF1717 - hypothetical protein, at 364,309 to 365,679
GFF1717
GFF1718 - Malate dehydrogenase (EC 1.1.1.37), at 365,837 to 366,760
GFF1718
GFF1719 - Transcriptional regulator, LysR family, at 366,761 to 367,684
GFF1719
Position (kb) 365
366
367 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 365.636 kb on + strand at 365.677 kb on + strand at 365.677 kb on + strand at 365.677 kb on + strand at 365.677 kb on + strand at 365.677 kb on + strand at 365.677 kb on + strand at 365.677 kb on + strand at 365.677 kb on + strand at 365.677 kb on + strand at 365.677 kb on + strand at 365.677 kb on + strand at 365.677 kb on + strand at 365.677 kb on + strand at 365.677 kb on + strand at 365.677 kb on + strand at 365.677 kb on + strand at 365.677 kb on + strand at 365.677 kb on + strand at 365.677 kb on + strand at 365.677 kb on + strand at 365.678 kb on - strand at 365.678 kb on - strand at 365.678 kb on - strand at 365.678 kb on - strand at 365.678 kb on - strand at 365.678 kb on - strand at 365.678 kb on - strand at 365.678 kb on - strand at 365.678 kb on - strand at 365.678 kb on - strand at 365.678 kb on - strand at 365.678 kb on - strand at 365.678 kb on - strand at 365.678 kb on - strand at 365.678 kb on - strand at 365.678 kb on - strand at 365.678 kb on - strand at 365.678 kb on - strand at 365.678 kb on - strand at 365.678 kb on - strand at 365.678 kb on - strand at 365.678 kb on - strand at 365.678 kb on - strand at 365.678 kb on - strand at 365.678 kb on - strand at 365.776 kb on + strand at 365.776 kb on + strand at 365.777 kb on - strand at 365.777 kb on - strand at 365.795 kb on + strand at 365.942 kb on + strand, within GFF1718 at 365.942 kb on + strand, within GFF1718 at 365.942 kb on + strand, within GFF1718 at 365.943 kb on - strand, within GFF1718 at 365.943 kb on - strand, within GFF1718 at 365.943 kb on - strand, within GFF1718 at 366.098 kb on + strand, within GFF1718 at 366.098 kb on + strand, within GFF1718 at 366.099 kb on - strand, within GFF1718 at 366.131 kb on + strand, within GFF1718 at 366.131 kb on + strand, within GFF1718 at 366.131 kb on + strand, within GFF1718 at 366.131 kb on + strand, within GFF1718 at 366.132 kb on - strand, within GFF1718 at 366.132 kb on - strand, within GFF1718 at 366.132 kb on - strand, within GFF1718 at 366.152 kb on + strand, within GFF1718 at 366.152 kb on + strand, within GFF1718 at 366.152 kb on + strand, within GFF1718 at 366.152 kb on + strand, within GFF1718 at 366.153 kb on - strand, within GFF1718 at 366.153 kb on - strand, within GFF1718 at 366.155 kb on + strand, within GFF1718 at 366.155 kb on + strand, within GFF1718 at 366.155 kb on + strand, within GFF1718 at 366.155 kb on + strand, within GFF1718 at 366.155 kb on + strand, within GFF1718 at 366.155 kb on + strand, within GFF1718 at 366.156 kb on - strand, within GFF1718 at 366.156 kb on - strand, within GFF1718 at 366.156 kb on - strand, within GFF1718 at 366.156 kb on - strand, within GFF1718 at 366.156 kb on - strand, within GFF1718 at 366.156 kb on - strand, within GFF1718 at 366.156 kb on - strand, within GFF1718 at 366.156 kb on - strand, within GFF1718 at 366.248 kb on + strand, within GFF1718 at 366.248 kb on + strand, within GFF1718 at 366.248 kb on + strand, within GFF1718 at 366.248 kb on + strand, within GFF1718 at 366.249 kb on - strand, within GFF1718 at 366.249 kb on - strand, within GFF1718 at 366.673 kb on + strand at 366.673 kb on + strand at 366.673 kb on + strand at 366.673 kb on + strand at 366.673 kb on + strand at 366.673 kb on + strand at 366.673 kb on + strand at 366.673 kb on + strand at 366.674 kb on - strand at 366.674 kb on - strand at 366.674 kb on - strand at 366.674 kb on - strand at 366.758 kb on + strand at 366.758 kb on + strand at 366.758 kb on + strand at 366.759 kb on - strand at 366.858 kb on + strand, within GFF1719 at 366.858 kb on + strand, within GFF1719 at 366.858 kb on + strand, within GFF1719 at 366.858 kb on + strand, within GFF1719 at 366.858 kb on + strand, within GFF1719 at 366.858 kb on + strand, within GFF1719 at 366.858 kb on + strand, within GFF1719 at 366.858 kb on + strand, within GFF1719 at 366.858 kb on + strand, within GFF1719 at 366.858 kb on + strand, within GFF1719 at 366.858 kb on + strand, within GFF1719 at 366.858 kb on + strand, within GFF1719 at 366.858 kb on + strand, within GFF1719 at 366.858 kb on + strand, within GFF1719 at 366.859 kb on - strand, within GFF1719 at 366.859 kb on - strand, within GFF1719 at 366.859 kb on - strand, within GFF1719 at 366.859 kb on - strand, within GFF1719 at 366.859 kb on - strand, within GFF1719 at 366.859 kb on - strand, within GFF1719 at 366.859 kb on - strand, within GFF1719 at 366.859 kb on - strand, within GFF1719 at 366.859 kb on - strand, within GFF1719 at 367.547 kb on + strand, within GFF1719 at 367.547 kb on + strand, within GFF1719 at 367.547 kb on + strand, within GFF1719 at 367.547 kb on + strand, within GFF1719 at 367.547 kb on + strand, within GFF1719 at 367.547 kb on + strand, within GFF1719 at 367.547 kb on + strand, within GFF1719 at 367.547 kb on + strand, within GFF1719 at 367.547 kb on + strand, within GFF1719 at 367.548 kb on - strand, within GFF1719 at 367.548 kb on - strand, within GFF1719 at 367.548 kb on - strand, within GFF1719 at 367.548 kb on - strand, within GFF1719 at 367.548 kb on - strand, within GFF1719 at 367.548 kb on - strand, within GFF1719 at 367.548 kb on - strand, within GFF1719 at 367.548 kb on - strand, within GFF1719 at 367.548 kb on - strand, within GFF1719 at 367.548 kb on - strand, within GFF1719 at 367.548 kb on - strand, within GFF1719 at 367.548 kb on - strand, within GFF1719 at 367.548 kb on - strand, within GFF1719 at 367.728 kb on + strand at 367.728 kb on + strand at 367.729 kb on - strand at 367.748 kb on + strand at 367.748 kb on + strand at 367.748 kb on + strand at 367.748 kb on + strand at 367.748 kb on + strand at 367.748 kb on + strand at 367.748 kb on + strand at 367.748 kb on + strand at 367.749 kb on - strand at 367.749 kb on - strand at 367.749 kb on - strand at 367.749 kb on - strand at 367.749 kb on - strand at 367.749 kb on - strand at 367.749 kb on - strand at 367.749 kb on - strand at 367.749 kb on - strand at 367.752 kb on + strand at 367.752 kb on + strand at 367.753 kb on - strand at 367.753 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL remove 365,636 + +0.6 365,677 + -1.4 365,677 + -1.6 365,677 + +1.2 365,677 + -0.1 365,677 + +1.2 365,677 + +0.5 365,677 + -1.4 365,677 + -0.8 365,677 + -0.9 365,677 + -0.6 365,677 + -0.5 365,677 + -0.4 365,677 + -0.8 365,677 + +0.1 365,677 + -0.0 365,677 + +0.4 365,677 + -0.1 365,677 + -0.4 365,677 + +1.7 365,677 + -0.9 365,678 - -1.4 365,678 - -0.0 365,678 - -0.1 365,678 - -0.4 365,678 - -1.2 365,678 - -0.1 365,678 - -0.6 365,678 - +0.4 365,678 - -0.5 365,678 - -0.3 365,678 - -1.6 365,678 - +0.0 365,678 - +0.6 365,678 - +0.8 365,678 - -0.3 365,678 - -0.2 365,678 - +3.7 365,678 - -1.3 365,678 - +2.2 365,678 - -3.2 365,678 - -1.7 365,678 - -1.4 365,678 - +0.6 365,678 - +0.4 365,678 - +1.3 365,776 + -2.1 365,776 + -0.3 365,777 - +0.7 365,777 - -0.9 365,795 + -0.1 365,942 + GFF1718 0.11 -0.6 365,942 + GFF1718 0.11 +0.1 365,942 + GFF1718 0.11 +0.2 365,943 - GFF1718 0.11 -0.4 365,943 - GFF1718 0.11 -1.6 365,943 - GFF1718 0.11 -1.0 366,098 + GFF1718 0.28 -1.1 366,098 + GFF1718 0.28 +0.5 366,099 - GFF1718 0.28 +0.2 366,131 + GFF1718 0.32 +0.2 366,131 + GFF1718 0.32 -0.9 366,131 + GFF1718 0.32 -0.4 366,131 + GFF1718 0.32 -0.6 366,132 - GFF1718 0.32 -1.5 366,132 - GFF1718 0.32 +0.9 366,132 - GFF1718 0.32 +0.6 366,152 + GFF1718 0.34 -1.1 366,152 + GFF1718 0.34 -0.7 366,152 + GFF1718 0.34 -2.6 366,152 + GFF1718 0.34 -0.1 366,153 - GFF1718 0.34 +0.2 366,153 - GFF1718 0.34 -0.1 366,155 + GFF1718 0.34 -0.1 366,155 + GFF1718 0.34 +0.2 366,155 + GFF1718 0.34 +0.6 366,155 + GFF1718 0.34 +1.1 366,155 + GFF1718 0.34 -0.3 366,155 + GFF1718 0.34 +0.4 366,156 - GFF1718 0.35 -0.7 366,156 - GFF1718 0.35 +1.2 366,156 - GFF1718 0.35 -0.2 366,156 - GFF1718 0.35 -0.1 366,156 - GFF1718 0.35 -0.7 366,156 - GFF1718 0.35 -0.5 366,156 - GFF1718 0.35 +1.2 366,156 - GFF1718 0.35 +0.1 366,248 + GFF1718 0.44 +0.6 366,248 + GFF1718 0.44 +0.2 366,248 + GFF1718 0.44 -0.6 366,248 + GFF1718 0.44 -2.5 366,249 - GFF1718 0.45 +0.3 366,249 - GFF1718 0.45 +0.2 366,673 + -1.9 366,673 + -0.3 366,673 + -0.1 366,673 + -0.8 366,673 + -0.6 366,673 + +1.3 366,673 + -0.1 366,673 + +0.4 366,674 - -0.1 366,674 - +0.9 366,674 - -0.3 366,674 - +0.2 366,758 + -0.1 366,758 + -1.0 366,758 + +0.1 366,759 - -0.4 366,858 + GFF1719 0.10 +0.6 366,858 + GFF1719 0.10 -2.0 366,858 + GFF1719 0.10 -0.8 366,858 + GFF1719 0.10 +0.4 366,858 + GFF1719 0.10 -1.1 366,858 + GFF1719 0.10 -1.2 366,858 + GFF1719 0.10 +0.8 366,858 + GFF1719 0.10 -0.1 366,858 + GFF1719 0.10 +0.6 366,858 + GFF1719 0.10 +0.3 366,858 + GFF1719 0.10 -0.6 366,858 + GFF1719 0.10 -0.6 366,858 + GFF1719 0.10 -0.7 366,858 + GFF1719 0.10 -1.0 366,859 - GFF1719 0.11 +0.2 366,859 - GFF1719 0.11 -0.0 366,859 - GFF1719 0.11 -0.3 366,859 - GFF1719 0.11 +0.2 366,859 - GFF1719 0.11 +0.7 366,859 - GFF1719 0.11 -0.6 366,859 - GFF1719 0.11 +0.7 366,859 - GFF1719 0.11 -0.1 366,859 - GFF1719 0.11 -0.4 367,547 + GFF1719 0.85 -0.8 367,547 + GFF1719 0.85 -1.0 367,547 + GFF1719 0.85 -0.6 367,547 + GFF1719 0.85 -0.2 367,547 + GFF1719 0.85 -0.2 367,547 + GFF1719 0.85 +0.3 367,547 + GFF1719 0.85 -0.9 367,547 + GFF1719 0.85 -0.5 367,547 + GFF1719 0.85 +1.0 367,548 - GFF1719 0.85 -0.6 367,548 - GFF1719 0.85 +0.8 367,548 - GFF1719 0.85 +0.1 367,548 - GFF1719 0.85 -0.8 367,548 - GFF1719 0.85 +0.3 367,548 - GFF1719 0.85 -0.2 367,548 - GFF1719 0.85 +0.3 367,548 - GFF1719 0.85 -0.2 367,548 - GFF1719 0.85 -0.4 367,548 - GFF1719 0.85 +0.1 367,548 - GFF1719 0.85 -0.8 367,548 - GFF1719 0.85 +0.4 367,548 - GFF1719 0.85 -0.3 367,728 + +0.3 367,728 + +1.1 367,729 - -1.0 367,748 + +1.2 367,748 + -0.5 367,748 + +1.4 367,748 + -0.4 367,748 + +0.5 367,748 + -0.8 367,748 + +1.0 367,748 + -0.2 367,749 - +0.6 367,749 - -0.7 367,749 - +1.2 367,749 - -0.1 367,749 - -0.6 367,749 - -0.8 367,749 - -0.6 367,749 - +0.0 367,749 - -0.5 367,752 + -2.0 367,752 + -1.1 367,753 - +1.7 367,753 - -0.2
Or see this region's nucleotide sequence