Strain Fitness in Variovorax sp. SCN45 around GFF1612

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF1610 and GFF1611 are separated by 5 nucleotidesGFF1611 and GFF1612 are separated by 6 nucleotidesGFF1612 and GFF1613 are separated by 43 nucleotidesGFF1613 and GFF1614 are separated by 2 nucleotides GFF1610 - Succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16), at 208,993 to 210,459 GFF1610 GFF1611 - no description, at 210,465 to 210,812 GFF1611 GFF1612 - no description, at 210,819 to 211,112 GFF1612 GFF1613 - Phosphonate ABC transporter permease protein PhnE (TC 3.A.1.9.1), at 211,156 to 211,980 GFF1613 GFF1614 - Phosphonate ABC transporter ATP-binding protein PhnC (TC 3.A.1.9.1), at 211,983 to 212,783 GFF1614 Position (kb) 210 211 212Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 209.884 kb on + strand, within GFF1610at 209.884 kb on + strand, within GFF1610at 209.884 kb on + strand, within GFF1610at 209.884 kb on + strand, within GFF1610at 209.884 kb on + strand, within GFF1610at 209.884 kb on + strand, within GFF1610at 209.884 kb on + strand, within GFF1610at 209.884 kb on + strand, within GFF1610at 209.885 kb on - strand, within GFF1610at 209.885 kb on - strand, within GFF1610at 209.885 kb on - strand, within GFF1610at 209.903 kb on - strand, within GFF1610at 209.903 kb on - strand, within GFF1610at 209.903 kb on - strand, within GFF1610at 209.903 kb on - strand, within GFF1610at 210.247 kb on + strand, within GFF1610at 210.247 kb on + strand, within GFF1610at 210.247 kb on + strand, within GFF1610at 210.247 kb on + strand, within GFF1610at 210.247 kb on + strand, within GFF1610at 210.247 kb on + strand, within GFF1610at 210.248 kb on - strand, within GFF1610at 210.458 kb on - strandat 210.487 kb on + strandat 210.488 kb on - strandat 210.494 kb on - strandat 210.494 kb on - strandat 210.533 kb on + strand, within GFF1611at 210.533 kb on + strand, within GFF1611at 210.533 kb on + strand, within GFF1611at 210.534 kb on - strand, within GFF1611at 210.534 kb on - strand, within GFF1611at 210.534 kb on - strand, within GFF1611at 210.542 kb on + strand, within GFF1611at 210.548 kb on + strand, within GFF1611at 210.747 kb on + strand, within GFF1611at 210.747 kb on + strand, within GFF1611at 210.747 kb on + strand, within GFF1611at 210.747 kb on + strand, within GFF1611at 210.747 kb on + strand, within GFF1611at 210.747 kb on + strand, within GFF1611at 210.748 kb on - strand, within GFF1611at 210.748 kb on - strand, within GFF1611at 210.748 kb on - strand, within GFF1611at 210.748 kb on - strand, within GFF1611at 210.748 kb on - strand, within GFF1611at 210.748 kb on - strand, within GFF1611at 210.926 kb on + strand, within GFF1612at 210.926 kb on + strand, within GFF1612at 210.927 kb on - strand, within GFF1612at 210.927 kb on - strand, within GFF1612at 210.943 kb on + strand, within GFF1612at 210.943 kb on + strand, within GFF1612at 210.943 kb on + strand, within GFF1612at 210.944 kb on - strand, within GFF1612at 210.944 kb on - strand, within GFF1612at 211.023 kb on + strand, within GFF1612at 211.024 kb on - strand, within GFF1612at 211.024 kb on - strand, within GFF1612at 211.024 kb on - strand, within GFF1612at 211.024 kb on - strand, within GFF1612at 211.024 kb on - strand, within GFF1612at 211.033 kb on + strand, within GFF1612at 211.033 kb on + strand, within GFF1612at 211.034 kb on - strand, within GFF1612at 211.034 kb on - strand, within GFF1612at 211.034 kb on - strand, within GFF1612at 211.034 kb on - strand, within GFF1612at 211.034 kb on - strand, within GFF1612at 211.035 kb on + strand, within GFF1612at 211.035 kb on + strand, within GFF1612at 211.036 kb on - strand, within GFF1612at 211.041 kb on + strand, within GFF1612at 211.041 kb on + strand, within GFF1612at 211.042 kb on - strand, within GFF1612at 211.042 kb on - strand, within GFF1612at 211.231 kb on - strandat 211.236 kb on + strandat 211.237 kb on - strandat 211.361 kb on + strand, within GFF1613at 211.640 kb on + strand, within GFF1613at 211.640 kb on + strand, within GFF1613at 211.641 kb on - strand, within GFF1613at 211.641 kb on - strand, within GFF1613at 211.641 kb on - strand, within GFF1613at 211.641 kb on - strand, within GFF1613at 211.958 kb on + strandat 212.069 kb on - strand, within GFF1614at 212.069 kb on - strand, within GFF1614at 212.069 kb on - strand, within GFF1614at 212.069 kb on - strand, within GFF1614

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
remove
209,884 + GFF1610 0.61 +0.2
209,884 + GFF1610 0.61 +0.2
209,884 + GFF1610 0.61 +0.7
209,884 + GFF1610 0.61 -0.2
209,884 + GFF1610 0.61 -1.1
209,884 + GFF1610 0.61 -0.4
209,884 + GFF1610 0.61 -0.8
209,884 + GFF1610 0.61 -0.1
209,885 - GFF1610 0.61 -0.1
209,885 - GFF1610 0.61 -0.3
209,885 - GFF1610 0.61 +0.3
209,903 - GFF1610 0.62 -1.1
209,903 - GFF1610 0.62 -0.3
209,903 - GFF1610 0.62 -1.1
209,903 - GFF1610 0.62 -1.5
210,247 + GFF1610 0.85 -0.3
210,247 + GFF1610 0.85 +2.2
210,247 + GFF1610 0.85 -1.3
210,247 + GFF1610 0.85 -0.0
210,247 + GFF1610 0.85 +3.6
210,247 + GFF1610 0.85 -1.2
210,248 - GFF1610 0.86 +0.5
210,458 - -1.0
210,487 + -0.4
210,488 - +0.0
210,494 - +2.7
210,494 - -0.6
210,533 + GFF1611 0.20 -0.3
210,533 + GFF1611 0.20 +0.2
210,533 + GFF1611 0.20 +0.2
210,534 - GFF1611 0.20 -0.9
210,534 - GFF1611 0.20 +1.1
210,534 - GFF1611 0.20 +0.6
210,542 + GFF1611 0.22 -1.5
210,548 + GFF1611 0.24 -1.3
210,747 + GFF1611 0.81 +0.2
210,747 + GFF1611 0.81 -1.1
210,747 + GFF1611 0.81 +0.3
210,747 + GFF1611 0.81 -1.3
210,747 + GFF1611 0.81 +0.0
210,747 + GFF1611 0.81 -0.4
210,748 - GFF1611 0.81 -0.4
210,748 - GFF1611 0.81 -0.5
210,748 - GFF1611 0.81 -0.5
210,748 - GFF1611 0.81 -2.8
210,748 - GFF1611 0.81 -0.3
210,748 - GFF1611 0.81 +0.7
210,926 + GFF1612 0.36 -1.0
210,926 + GFF1612 0.36 -0.3
210,927 - GFF1612 0.37 -0.3
210,927 - GFF1612 0.37 -0.1
210,943 + GFF1612 0.42 -0.2
210,943 + GFF1612 0.42 -0.6
210,943 + GFF1612 0.42 +1.6
210,944 - GFF1612 0.43 -0.1
210,944 - GFF1612 0.43 +0.2
211,023 + GFF1612 0.69 -2.1
211,024 - GFF1612 0.70 -1.4
211,024 - GFF1612 0.70 +0.2
211,024 - GFF1612 0.70 -0.3
211,024 - GFF1612 0.70 -1.8
211,024 - GFF1612 0.70 -1.5
211,033 + GFF1612 0.73 -0.4
211,033 + GFF1612 0.73 -1.7
211,034 - GFF1612 0.73 -1.1
211,034 - GFF1612 0.73 -0.4
211,034 - GFF1612 0.73 -2.7
211,034 - GFF1612 0.73 -1.1
211,034 - GFF1612 0.73 -0.6
211,035 + GFF1612 0.73 -1.0
211,035 + GFF1612 0.73 +0.4
211,036 - GFF1612 0.74 +0.3
211,041 + GFF1612 0.76 -0.2
211,041 + GFF1612 0.76 -0.4
211,042 - GFF1612 0.76 +0.3
211,042 - GFF1612 0.76 -2.0
211,231 - -0.2
211,236 + -0.2
211,237 - +0.1
211,361 + GFF1613 0.25 -0.5
211,640 + GFF1613 0.59 -0.1
211,640 + GFF1613 0.59 +0.2
211,641 - GFF1613 0.59 -0.1
211,641 - GFF1613 0.59 +0.7
211,641 - GFF1613 0.59 +0.1
211,641 - GFF1613 0.59 -0.8
211,958 + -0.3
212,069 - GFF1614 0.11 -0.1
212,069 - GFF1614 0.11 -0.9
212,069 - GFF1614 0.11 -0.5
212,069 - GFF1614 0.11 -2.1

Or see this region's nucleotide sequence