Strain Fitness in Variovorax sp. SCN45 around GFF1491

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1489 and GFF1490 are separated by 3 nucleotidesGFF1490 and GFF1491 are separated by 35 nucleotidesGFF1491 and GFF1492 are separated by 1 nucleotidesGFF1492 and GFF1493 are separated by 8 nucleotides GFF1489 - Tetrapartite efflux system, outer membrane factor lipoprotein FusA-like, at 81,910 to 83,373 GFF1489 GFF1490 - Transcriptional regulator, LysR family, at 83,377 to 84,273 GFF1490 GFF1491 - Gluconolactonase, at 84,309 to 85,241 GFF1491 GFF1492 - putative 2-pyrone-4,6-dicarboxylic acid hydrolase, at 85,243 to 86,142 GFF1492 GFF1493 - BUG/TctC family periplasmic protein, at 86,151 to 87,116 GFF1493 Position (kb) 84 85 86Strain fitness (log2 ratio) -2 -1 0 1 2 3at 83.371 kb on + strandat 83.887 kb on + strand, within GFF1490at 83.950 kb on + strand, within GFF1490at 83.951 kb on - strand, within GFF1490at 83.951 kb on - strand, within GFF1490at 83.951 kb on - strand, within GFF1490at 84.007 kb on + strand, within GFF1490at 84.007 kb on + strand, within GFF1490at 84.007 kb on + strand, within GFF1490at 84.008 kb on - strand, within GFF1490at 84.102 kb on - strand, within GFF1490at 84.102 kb on - strand, within GFF1490at 84.187 kb on + strandat 84.187 kb on + strandat 84.188 kb on - strandat 84.188 kb on - strandat 84.310 kb on + strandat 84.310 kb on + strandat 84.311 kb on - strandat 84.437 kb on + strand, within GFF1491at 84.511 kb on + strand, within GFF1491at 84.676 kb on + strand, within GFF1491at 84.676 kb on + strand, within GFF1491at 84.676 kb on + strand, within GFF1491at 84.676 kb on + strand, within GFF1491at 84.820 kb on + strand, within GFF1491at 84.944 kb on - strand, within GFF1491at 84.944 kb on - strand, within GFF1491at 84.944 kb on - strand, within GFF1491at 85.003 kb on + strand, within GFF1491at 85.062 kb on + strand, within GFF1491at 85.062 kb on + strand, within GFF1491at 85.063 kb on - strand, within GFF1491at 85.063 kb on - strand, within GFF1491at 85.063 kb on - strand, within GFF1491at 85.075 kb on + strand, within GFF1491at 85.237 kb on + strandat 85.238 kb on - strandat 85.238 kb on - strandat 85.238 kb on - strandat 85.275 kb on - strandat 85.499 kb on + strand, within GFF1492at 85.499 kb on + strand, within GFF1492at 85.499 kb on + strand, within GFF1492at 85.499 kb on + strand, within GFF1492at 85.500 kb on - strand, within GFF1492at 85.500 kb on - strand, within GFF1492at 85.500 kb on - strand, within GFF1492at 85.559 kb on + strand, within GFF1492at 85.559 kb on + strand, within GFF1492at 85.560 kb on - strand, within GFF1492at 85.560 kb on - strand, within GFF1492at 85.560 kb on - strand, within GFF1492at 85.560 kb on - strand, within GFF1492at 85.560 kb on - strand, within GFF1492at 85.684 kb on + strand, within GFF1492at 85.684 kb on + strand, within GFF1492at 85.684 kb on + strand, within GFF1492at 85.684 kb on + strand, within GFF1492at 85.684 kb on + strand, within GFF1492at 85.685 kb on - strand, within GFF1492at 85.685 kb on - strand, within GFF1492at 85.685 kb on - strand, within GFF1492at 85.685 kb on - strand, within GFF1492at 86.203 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
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83,371 + -0.9
83,887 + GFF1490 0.57 -1.3
83,950 + GFF1490 0.64 -0.1
83,951 - GFF1490 0.64 +0.1
83,951 - GFF1490 0.64 -0.0
83,951 - GFF1490 0.64 -2.4
84,007 + GFF1490 0.70 -0.2
84,007 + GFF1490 0.70 +3.3
84,007 + GFF1490 0.70 +0.0
84,008 - GFF1490 0.70 +0.1
84,102 - GFF1490 0.81 +0.9
84,102 - GFF1490 0.81 -0.4
84,187 + -0.3
84,187 + -0.2
84,188 - -2.3
84,188 - +0.7
84,310 + +0.7
84,310 + -1.2
84,311 - -0.3
84,437 + GFF1491 0.14 -0.7
84,511 + GFF1491 0.22 +0.1
84,676 + GFF1491 0.39 -0.6
84,676 + GFF1491 0.39 +0.6
84,676 + GFF1491 0.39 +1.0
84,676 + GFF1491 0.39 -1.0
84,820 + GFF1491 0.55 -1.7
84,944 - GFF1491 0.68 +0.9
84,944 - GFF1491 0.68 -0.4
84,944 - GFF1491 0.68 +0.7
85,003 + GFF1491 0.74 +0.5
85,062 + GFF1491 0.81 -0.3
85,062 + GFF1491 0.81 -0.1
85,063 - GFF1491 0.81 +0.4
85,063 - GFF1491 0.81 +0.7
85,063 - GFF1491 0.81 +0.1
85,075 + GFF1491 0.82 +0.0
85,237 + +0.0
85,238 - +1.7
85,238 - -1.3
85,238 - -1.3
85,275 - +1.0
85,499 + GFF1492 0.28 +0.1
85,499 + GFF1492 0.28 -0.8
85,499 + GFF1492 0.28 +0.3
85,499 + GFF1492 0.28 -0.9
85,500 - GFF1492 0.29 -0.3
85,500 - GFF1492 0.29 -0.3
85,500 - GFF1492 0.29 +1.0
85,559 + GFF1492 0.35 -1.7
85,559 + GFF1492 0.35 -0.0
85,560 - GFF1492 0.35 -0.4
85,560 - GFF1492 0.35 -0.9
85,560 - GFF1492 0.35 -1.5
85,560 - GFF1492 0.35 -1.0
85,560 - GFF1492 0.35 -0.3
85,684 + GFF1492 0.49 +0.0
85,684 + GFF1492 0.49 +0.5
85,684 + GFF1492 0.49 -0.9
85,684 + GFF1492 0.49 -0.5
85,684 + GFF1492 0.49 +0.5
85,685 - GFF1492 0.49 -0.5
85,685 - GFF1492 0.49 -1.4
85,685 - GFF1492 0.49 +0.1
85,685 - GFF1492 0.49 -2.1
86,203 + -1.3

Or see this region's nucleotide sequence