Strain Fitness in Variovorax sp. SCN45 around GFF1451

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
43,286	+				-0.6
43,457	-		GFF1451	0.25	-1.4
43,556	-		GFF1451	0.44	+1.3
43,571	-		GFF1451	0.46	-1.4
43,667	-		GFF1451	0.64	+2.0
43,753	+		GFF1451	0.80	+0.3
43,754	-		GFF1451	0.80	+0.3
43,754	-		GFF1451	0.80	+0.7
43,754	-		GFF1451	0.80	+0.3
43,789	+		GFF1451	0.87	+0.6
43,789	+		GFF1451	0.87	+1.0
43,822	+				-0.2
43,823	-				-1.2
43,823	-				-0.3
43,823	-				-0.0
43,823	-				-0.9
43,823	-				+0.8
43,980	-				-0.0
44,042	+				+2.0
44,042	+				-0.3
44,043	-				-1.4
44,106	-		GFF1452	0.11	-1.2
44,237	+		GFF1452	0.18	-1.9
44,237	+		GFF1452	0.18	+0.7
44,238	-		GFF1452	0.18	-0.7
44,238	-		GFF1452	0.18	+0.5
44,564	+		GFF1452	0.35	+0.1
44,565	-		GFF1452	0.35	+0.7
44,565	-		GFF1452	0.35	-0.5