Strain Fitness in Variovorax sp. SCN45 around GFF1384

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1382 and GFF1383 are separated by 31 nucleotidesGFF1383 and GFF1384 are separated by 3 nucleotidesGFF1384 and GFF1385 are separated by 61 nucleotides GFF1382 - Short-chain dehydrogenase, associated with 2-hydroxychromene-2-carboxylate isomerase family protein, at 728,334 to 729,131 GFF1382 GFF1383 - Hypothetical protein in cluster with At3g50560-like gene family, at 729,163 to 730,023 GFF1383 GFF1384 - Nitrilotriacetate monooxygenase component A (EC 1.14.13.-), at 730,027 to 731,358 GFF1384 GFF1385 - Multidrug resistance transporter, Bcr/CflA family, at 731,420 to 732,634 GFF1385 Position (kb) 730 731 732Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 729.230 kb on - strandat 729.230 kb on - strandat 729.230 kb on - strandat 729.262 kb on + strand, within GFF1383at 729.262 kb on + strand, within GFF1383at 729.263 kb on - strand, within GFF1383at 729.263 kb on - strand, within GFF1383at 729.263 kb on - strand, within GFF1383at 729.451 kb on + strand, within GFF1383at 729.451 kb on + strand, within GFF1383at 729.451 kb on + strand, within GFF1383at 729.451 kb on + strand, within GFF1383at 729.451 kb on + strand, within GFF1383at 729.451 kb on + strand, within GFF1383at 729.451 kb on + strand, within GFF1383at 729.452 kb on - strand, within GFF1383at 729.452 kb on - strand, within GFF1383at 729.452 kb on - strand, within GFF1383at 729.452 kb on - strand, within GFF1383at 729.452 kb on - strand, within GFF1383at 729.455 kb on - strand, within GFF1383at 729.455 kb on - strand, within GFF1383at 729.455 kb on - strand, within GFF1383at 729.808 kb on + strand, within GFF1383at 729.808 kb on + strand, within GFF1383at 729.808 kb on + strand, within GFF1383at 729.808 kb on + strand, within GFF1383at 729.808 kb on + strand, within GFF1383at 729.808 kb on + strand, within GFF1383at 729.809 kb on - strand, within GFF1383at 729.809 kb on - strand, within GFF1383at 729.809 kb on - strand, within GFF1383at 729.820 kb on + strand, within GFF1383at 729.820 kb on + strand, within GFF1383at 729.820 kb on + strand, within GFF1383at 729.820 kb on + strand, within GFF1383at 729.820 kb on + strand, within GFF1383at 729.821 kb on - strand, within GFF1383at 729.821 kb on - strand, within GFF1383at 729.821 kb on - strand, within GFF1383at 729.889 kb on + strand, within GFF1383at 729.889 kb on + strand, within GFF1383at 729.890 kb on - strand, within GFF1383at 729.919 kb on + strand, within GFF1383at 729.919 kb on + strand, within GFF1383at 730.300 kb on - strand, within GFF1384at 730.300 kb on - strand, within GFF1384at 730.300 kb on - strand, within GFF1384at 730.486 kb on + strand, within GFF1384at 730.486 kb on + strand, within GFF1384at 730.486 kb on + strand, within GFF1384at 730.487 kb on - strand, within GFF1384at 730.507 kb on + strand, within GFF1384at 730.508 kb on - strand, within GFF1384at 730.650 kb on + strand, within GFF1384at 730.651 kb on - strand, within GFF1384at 730.783 kb on + strand, within GFF1384at 730.924 kb on + strand, within GFF1384at 730.925 kb on - strand, within GFF1384at 731.108 kb on - strand, within GFF1384at 731.287 kb on + strandat 731.287 kb on + strandat 731.288 kb on - strandat 731.288 kb on - strandat 731.298 kb on + strandat 731.298 kb on + strandat 731.298 kb on + strandat 731.298 kb on + strandat 731.298 kb on + strandat 731.298 kb on + strandat 731.299 kb on - strandat 731.299 kb on - strandat 731.299 kb on - strandat 731.299 kb on - strandat 731.299 kb on - strandat 731.356 kb on + strandat 731.357 kb on - strandat 731.498 kb on + strandat 731.498 kb on + strandat 731.498 kb on + strandat 731.498 kb on + strandat 731.498 kb on + strandat 731.498 kb on + strandat 731.498 kb on + strandat 731.499 kb on - strandat 731.499 kb on - strandat 731.499 kb on - strandat 731.499 kb on - strandat 731.499 kb on - strandat 731.499 kb on - strandat 731.499 kb on - strandat 731.606 kb on + strand, within GFF1385at 731.607 kb on - strand, within GFF1385at 731.648 kb on + strand, within GFF1385at 731.648 kb on + strand, within GFF1385at 731.648 kb on + strand, within GFF1385at 731.648 kb on + strand, within GFF1385at 731.649 kb on - strand, within GFF1385at 732.029 kb on + strand, within GFF1385at 732.056 kb on + strand, within GFF1385at 732.107 kb on + strand, within GFF1385at 732.107 kb on + strand, within GFF1385at 732.108 kb on - strand, within GFF1385at 732.164 kb on + strand, within GFF1385at 732.164 kb on + strand, within GFF1385at 732.164 kb on + strand, within GFF1385at 732.164 kb on + strand, within GFF1385at 732.164 kb on + strand, within GFF1385at 732.164 kb on + strand, within GFF1385at 732.164 kb on + strand, within GFF1385at 732.164 kb on + strand, within GFF1385at 732.165 kb on - strand, within GFF1385at 732.165 kb on - strand, within GFF1385at 732.165 kb on - strand, within GFF1385at 732.165 kb on - strand, within GFF1385at 732.165 kb on - strand, within GFF1385at 732.165 kb on - strand, within GFF1385at 732.165 kb on - strand, within GFF1385at 732.165 kb on - strand, within GFF1385at 732.165 kb on - strand, within GFF1385at 732.165 kb on - strand, within GFF1385at 732.308 kb on + strand, within GFF1385at 732.309 kb on - strand, within GFF1385at 732.309 kb on - strand, within GFF1385at 732.353 kb on + strand, within GFF1385at 732.354 kb on - strand, within GFF1385at 732.354 kb on - strand, within GFF1385

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
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729,230 - -2.7
729,230 - +0.9
729,230 - -1.6
729,262 + GFF1383 0.11 -0.7
729,262 + GFF1383 0.11 -0.2
729,263 - GFF1383 0.12 +0.4
729,263 - GFF1383 0.12 -0.6
729,263 - GFF1383 0.12 -1.1
729,451 + GFF1383 0.33 -0.4
729,451 + GFF1383 0.33 +0.3
729,451 + GFF1383 0.33 +0.1
729,451 + GFF1383 0.33 +2.0
729,451 + GFF1383 0.33 -0.6
729,451 + GFF1383 0.33 +1.0
729,451 + GFF1383 0.33 +0.2
729,452 - GFF1383 0.34 -0.7
729,452 - GFF1383 0.34 +0.4
729,452 - GFF1383 0.34 -1.2
729,452 - GFF1383 0.34 -0.4
729,452 - GFF1383 0.34 -1.1
729,455 - GFF1383 0.34 +0.8
729,455 - GFF1383 0.34 -0.4
729,455 - GFF1383 0.34 -0.6
729,808 + GFF1383 0.75 +0.4
729,808 + GFF1383 0.75 +1.1
729,808 + GFF1383 0.75 +0.3
729,808 + GFF1383 0.75 +0.9
729,808 + GFF1383 0.75 -0.2
729,808 + GFF1383 0.75 -1.6
729,809 - GFF1383 0.75 -1.4
729,809 - GFF1383 0.75 -1.0
729,809 - GFF1383 0.75 -1.2
729,820 + GFF1383 0.76 +0.3
729,820 + GFF1383 0.76 -0.6
729,820 + GFF1383 0.76 -0.9
729,820 + GFF1383 0.76 -0.1
729,820 + GFF1383 0.76 +0.2
729,821 - GFF1383 0.76 -0.0
729,821 - GFF1383 0.76 -0.1
729,821 - GFF1383 0.76 -0.3
729,889 + GFF1383 0.84 -0.1
729,889 + GFF1383 0.84 -1.4
729,890 - GFF1383 0.84 -0.6
729,919 + GFF1383 0.88 -0.9
729,919 + GFF1383 0.88 +0.4
730,300 - GFF1384 0.20 -0.5
730,300 - GFF1384 0.20 -0.3
730,300 - GFF1384 0.20 +0.5
730,486 + GFF1384 0.34 -0.7
730,486 + GFF1384 0.34 +0.1
730,486 + GFF1384 0.34 -0.9
730,487 - GFF1384 0.35 +0.6
730,507 + GFF1384 0.36 -1.0
730,508 - GFF1384 0.36 -2.4
730,650 + GFF1384 0.47 -0.9
730,651 - GFF1384 0.47 -0.5
730,783 + GFF1384 0.57 -0.7
730,924 + GFF1384 0.67 -0.6
730,925 - GFF1384 0.67 -0.2
731,108 - GFF1384 0.81 -0.6
731,287 + -2.8
731,287 + -1.6
731,288 - +0.2
731,288 - -0.3
731,298 + +0.2
731,298 + +0.1
731,298 + +0.7
731,298 + +2.0
731,298 + -0.0
731,298 + -0.1
731,299 - +1.1
731,299 - -0.1
731,299 - -0.2
731,299 - -0.3
731,299 - -0.6
731,356 + -0.3
731,357 - -1.2
731,498 + -0.9
731,498 + -0.4
731,498 + -0.2
731,498 + -1.7
731,498 + -0.6
731,498 + -0.6
731,498 + +0.4
731,499 - +0.8
731,499 - +1.2
731,499 - +0.6
731,499 - +0.2
731,499 - -1.2
731,499 - -1.8
731,499 - -0.9
731,606 + GFF1385 0.15 -0.6
731,607 - GFF1385 0.15 -0.4
731,648 + GFF1385 0.19 -0.2
731,648 + GFF1385 0.19 -0.2
731,648 + GFF1385 0.19 +0.2
731,648 + GFF1385 0.19 +0.2
731,649 - GFF1385 0.19 -0.9
732,029 + GFF1385 0.50 +1.1
732,056 + GFF1385 0.52 -0.4
732,107 + GFF1385 0.57 -0.2
732,107 + GFF1385 0.57 -0.2
732,108 - GFF1385 0.57 +0.0
732,164 + GFF1385 0.61 +0.7
732,164 + GFF1385 0.61 -1.3
732,164 + GFF1385 0.61 +0.5
732,164 + GFF1385 0.61 +0.1
732,164 + GFF1385 0.61 +0.2
732,164 + GFF1385 0.61 +0.2
732,164 + GFF1385 0.61 +0.1
732,164 + GFF1385 0.61 -0.2
732,165 - GFF1385 0.61 -1.4
732,165 - GFF1385 0.61 -0.2
732,165 - GFF1385 0.61 -0.3
732,165 - GFF1385 0.61 -0.5
732,165 - GFF1385 0.61 +0.0
732,165 - GFF1385 0.61 -0.7
732,165 - GFF1385 0.61 -1.2
732,165 - GFF1385 0.61 -1.1
732,165 - GFF1385 0.61 +0.4
732,165 - GFF1385 0.61 -0.8
732,308 + GFF1385 0.73 +0.1
732,309 - GFF1385 0.73 -1.0
732,309 - GFF1385 0.73 -0.4
732,353 + GFF1385 0.77 -0.2
732,354 - GFF1385 0.77 -0.3
732,354 - GFF1385 0.77 -0.2

Or see this region's nucleotide sequence