Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1088 and GFF1089 are separated by 179 nucleotides GFF1089 and GFF1090 are separated by 13 nucleotides GFF1090 and GFF1091 are separated by 18 nucleotides
GFF1088 - Putative hemolysin, at 399,300 to 400,184
GFF1088
GFF1089 - Polyphosphate kinase (EC 2.7.4.1), at 400,364 to 402,502
GFF1089
GFF1090 - Phosphohistidine phosphatase SixA, at 402,516 to 402,983
GFF1090
GFF1091 - Exopolyphosphatase (EC 3.6.1.11), at 403,002 to 404,522
GFF1091
Position (kb) 400
401
402
403 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 399.522 kb on + strand, within GFF1088 at 399.522 kb on + strand, within GFF1088 at 399.655 kb on - strand, within GFF1088 at 399.655 kb on - strand, within GFF1088 at 399.655 kb on - strand, within GFF1088 at 399.700 kb on - strand, within GFF1088 at 399.700 kb on - strand, within GFF1088 at 399.700 kb on - strand, within GFF1088 at 399.700 kb on - strand, within GFF1088 at 399.700 kb on - strand, within GFF1088 at 399.700 kb on - strand, within GFF1088 at 399.846 kb on - strand, within GFF1088 at 399.970 kb on - strand, within GFF1088 at 400.054 kb on - strand, within GFF1088 at 400.284 kb on + strand at 400.285 kb on - strand at 400.285 kb on - strand at 400.285 kb on - strand at 400.314 kb on + strand at 400.314 kb on + strand at 400.314 kb on + strand at 400.315 kb on - strand at 400.324 kb on + strand at 400.325 kb on - strand at 400.363 kb on + strand at 400.363 kb on + strand at 400.363 kb on + strand at 400.363 kb on + strand at 400.363 kb on + strand at 400.363 kb on + strand at 400.363 kb on + strand at 400.364 kb on - strand at 400.364 kb on - strand at 400.364 kb on - strand at 400.511 kb on + strand at 400.511 kb on + strand at 400.511 kb on + strand at 400.607 kb on + strand, within GFF1089 at 400.607 kb on + strand, within GFF1089 at 400.607 kb on + strand, within GFF1089 at 400.607 kb on + strand, within GFF1089 at 400.607 kb on + strand, within GFF1089 at 400.607 kb on + strand, within GFF1089 at 400.607 kb on + strand, within GFF1089 at 400.607 kb on + strand, within GFF1089 at 400.607 kb on + strand, within GFF1089 at 400.607 kb on + strand, within GFF1089 at 400.608 kb on - strand, within GFF1089 at 400.608 kb on - strand, within GFF1089 at 400.608 kb on - strand, within GFF1089 at 400.608 kb on - strand, within GFF1089 at 400.608 kb on - strand, within GFF1089 at 400.608 kb on - strand, within GFF1089 at 400.608 kb on - strand, within GFF1089 at 400.608 kb on - strand, within GFF1089 at 400.608 kb on - strand, within GFF1089 at 400.609 kb on + strand, within GFF1089 at 400.610 kb on - strand, within GFF1089 at 400.668 kb on - strand, within GFF1089 at 400.676 kb on + strand, within GFF1089 at 400.676 kb on + strand, within GFF1089 at 400.677 kb on - strand, within GFF1089 at 400.677 kb on - strand, within GFF1089 at 400.677 kb on - strand, within GFF1089 at 400.770 kb on + strand, within GFF1089 at 400.773 kb on - strand, within GFF1089 at 400.992 kb on + strand, within GFF1089 at 400.992 kb on + strand, within GFF1089 at 400.993 kb on - strand, within GFF1089 at 401.160 kb on - strand, within GFF1089 at 401.160 kb on - strand, within GFF1089 at 401.255 kb on + strand, within GFF1089 at 401.255 kb on + strand, within GFF1089 at 401.256 kb on - strand, within GFF1089 at 401.256 kb on - strand, within GFF1089 at 401.507 kb on + strand, within GFF1089 at 401.507 kb on + strand, within GFF1089 at 401.508 kb on - strand, within GFF1089 at 401.508 kb on - strand, within GFF1089 at 401.666 kb on + strand, within GFF1089 at 401.667 kb on - strand, within GFF1089 at 401.667 kb on - strand, within GFF1089 at 401.765 kb on + strand, within GFF1089 at 401.765 kb on + strand, within GFF1089 at 401.765 kb on + strand, within GFF1089 at 401.765 kb on + strand, within GFF1089 at 401.766 kb on - strand, within GFF1089 at 401.766 kb on - strand, within GFF1089 at 401.766 kb on - strand, within GFF1089 at 401.766 kb on - strand, within GFF1089 at 401.789 kb on + strand, within GFF1089 at 401.790 kb on - strand, within GFF1089 at 401.790 kb on - strand, within GFF1089 at 402.176 kb on + strand, within GFF1089 at 402.176 kb on + strand, within GFF1089 at 402.177 kb on - strand, within GFF1089 at 402.177 kb on - strand, within GFF1089 at 402.177 kb on - strand, within GFF1089 at 402.206 kb on + strand, within GFF1089 at 402.206 kb on + strand, within GFF1089 at 402.206 kb on + strand, within GFF1089 at 402.206 kb on + strand, within GFF1089 at 402.207 kb on - strand, within GFF1089 at 402.207 kb on - strand, within GFF1089 at 402.207 kb on - strand, within GFF1089 at 402.214 kb on + strand, within GFF1089 at 402.368 kb on + strand at 402.368 kb on + strand at 402.368 kb on + strand at 402.368 kb on + strand at 402.369 kb on - strand at 402.369 kb on - strand at 402.369 kb on - strand at 402.369 kb on - strand at 402.461 kb on + strand at 402.461 kb on + strand at 402.461 kb on + strand at 402.461 kb on + strand at 402.461 kb on + strand at 402.461 kb on + strand at 402.597 kb on - strand, within GFF1090 at 402.726 kb on + strand, within GFF1090 at 402.726 kb on + strand, within GFF1090 at 402.726 kb on + strand, within GFF1090 at 402.726 kb on + strand, within GFF1090 at 402.726 kb on + strand, within GFF1090 at 402.727 kb on - strand, within GFF1090 at 402.727 kb on - strand, within GFF1090 at 402.727 kb on - strand, within GFF1090 at 402.727 kb on - strand, within GFF1090 at 403.020 kb on + strand at 403.020 kb on + strand at 403.021 kb on - strand at 403.088 kb on - strand at 403.088 kb on - strand at 403.351 kb on + strand, within GFF1091 at 403.351 kb on + strand, within GFF1091 at 403.351 kb on + strand, within GFF1091 at 403.352 kb on - strand, within GFF1091 at 403.369 kb on + strand, within GFF1091 at 403.369 kb on + strand, within GFF1091
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL remove 399,522 + GFF1088 0.25 +0.0 399,522 + GFF1088 0.25 +0.3 399,655 - GFF1088 0.40 -0.5 399,655 - GFF1088 0.40 -0.1 399,655 - GFF1088 0.40 -0.7 399,700 - GFF1088 0.45 +0.4 399,700 - GFF1088 0.45 +0.0 399,700 - GFF1088 0.45 +0.2 399,700 - GFF1088 0.45 +0.2 399,700 - GFF1088 0.45 +0.5 399,700 - GFF1088 0.45 -0.7 399,846 - GFF1088 0.62 +1.3 399,970 - GFF1088 0.76 +0.1 400,054 - GFF1088 0.85 -0.3 400,284 + -1.1 400,285 - +0.7 400,285 - -1.1 400,285 - +0.1 400,314 + -0.1 400,314 + -0.7 400,314 + -0.3 400,315 - -0.8 400,324 + -1.1 400,325 - -1.4 400,363 + -0.5 400,363 + -0.5 400,363 + +0.4 400,363 + +1.0 400,363 + -0.6 400,363 + -0.0 400,363 + -0.5 400,364 - -1.0 400,364 - -0.1 400,364 - +0.1 400,511 + -0.1 400,511 + -0.4 400,511 + -0.8 400,607 + GFF1089 0.11 -1.1 400,607 + GFF1089 0.11 -0.2 400,607 + GFF1089 0.11 -0.4 400,607 + GFF1089 0.11 -0.9 400,607 + GFF1089 0.11 -0.1 400,607 + GFF1089 0.11 +1.0 400,607 + GFF1089 0.11 -0.9 400,607 + GFF1089 0.11 -0.7 400,607 + GFF1089 0.11 +1.5 400,607 + GFF1089 0.11 -0.5 400,608 - GFF1089 0.11 +0.4 400,608 - GFF1089 0.11 -1.5 400,608 - GFF1089 0.11 +1.0 400,608 - GFF1089 0.11 -0.1 400,608 - GFF1089 0.11 -0.1 400,608 - GFF1089 0.11 -0.1 400,608 - GFF1089 0.11 +1.2 400,608 - GFF1089 0.11 +0.1 400,608 - GFF1089 0.11 +0.2 400,609 + GFF1089 0.11 -1.0 400,610 - GFF1089 0.12 -0.6 400,668 - GFF1089 0.14 +0.0 400,676 + GFF1089 0.15 -1.0 400,676 + GFF1089 0.15 -0.1 400,677 - GFF1089 0.15 -0.3 400,677 - GFF1089 0.15 -0.7 400,677 - GFF1089 0.15 +1.4 400,770 + GFF1089 0.19 -1.7 400,773 - GFF1089 0.19 -0.1 400,992 + GFF1089 0.29 -0.7 400,992 + GFF1089 0.29 -0.4 400,993 - GFF1089 0.29 -2.2 401,160 - GFF1089 0.37 +2.8 401,160 - GFF1089 0.37 -1.1 401,255 + GFF1089 0.42 -1.2 401,255 + GFF1089 0.42 +0.4 401,256 - GFF1089 0.42 -0.3 401,256 - GFF1089 0.42 -0.2 401,507 + GFF1089 0.53 +0.6 401,507 + GFF1089 0.53 -0.8 401,508 - GFF1089 0.53 -0.5 401,508 - GFF1089 0.53 -0.9 401,666 + GFF1089 0.61 -0.1 401,667 - GFF1089 0.61 -0.6 401,667 - GFF1089 0.61 -0.4 401,765 + GFF1089 0.65 -0.7 401,765 + GFF1089 0.65 -0.5 401,765 + GFF1089 0.65 -2.0 401,765 + GFF1089 0.65 +0.1 401,766 - GFF1089 0.66 -0.7 401,766 - GFF1089 0.66 -0.9 401,766 - GFF1089 0.66 -0.9 401,766 - GFF1089 0.66 +0.5 401,789 + GFF1089 0.67 +0.1 401,790 - GFF1089 0.67 -0.4 401,790 - GFF1089 0.67 -0.0 402,176 + GFF1089 0.85 -0.6 402,176 + GFF1089 0.85 +0.4 402,177 - GFF1089 0.85 -0.4 402,177 - GFF1089 0.85 -0.8 402,177 - GFF1089 0.85 -1.3 402,206 + GFF1089 0.86 -0.3 402,206 + GFF1089 0.86 -0.6 402,206 + GFF1089 0.86 +1.9 402,206 + GFF1089 0.86 +0.4 402,207 - GFF1089 0.86 -0.7 402,207 - GFF1089 0.86 -0.6 402,207 - GFF1089 0.86 -2.6 402,214 + GFF1089 0.86 -0.3 402,368 + -0.0 402,368 + -0.6 402,368 + +1.0 402,368 + -0.7 402,369 - -2.1 402,369 - -0.3 402,369 - +0.0 402,369 - +0.3 402,461 + -0.4 402,461 + -0.5 402,461 + +0.7 402,461 + -0.1 402,461 + +0.1 402,461 + -0.1 402,597 - GFF1090 0.17 +0.0 402,726 + GFF1090 0.45 -1.8 402,726 + GFF1090 0.45 +1.0 402,726 + GFF1090 0.45 -0.7 402,726 + GFF1090 0.45 -1.5 402,726 + GFF1090 0.45 -0.3 402,727 - GFF1090 0.45 +2.0 402,727 - GFF1090 0.45 +0.4 402,727 - GFF1090 0.45 -0.1 402,727 - GFF1090 0.45 -1.3 403,020 + +1.0 403,020 + +0.4 403,021 - -1.1 403,088 - -1.6 403,088 - +0.4 403,351 + GFF1091 0.23 -0.1 403,351 + GFF1091 0.23 -0.4 403,351 + GFF1091 0.23 +0.3 403,352 - GFF1091 0.23 -1.5 403,369 + GFF1091 0.24 +0.7 403,369 + GFF1091 0.24 -2.0
Or see this region's nucleotide sequence