Strain Fitness in Variovorax sp. SCN45 around GFF969

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF968 and GFF969 overlap by 4 nucleotidesGFF969 and GFF970 overlap by 4 nucleotides GFF968 - Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12), at 282,896 to 284,560 GFF968 GFF969 - ATP-dependent protease HslVU (ClpYQ), peptidase subunit, at 284,557 to 285,150 GFF969 GFF970 - Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4), at 285,147 to 286,967 GFF970 Position (kb) 284 285 286Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 284.144 kb on + strand, within GFF968at 284.145 kb on - strand, within GFF968at 284.145 kb on - strand, within GFF968at 284.145 kb on - strand, within GFF968at 284.147 kb on + strand, within GFF968at 284.147 kb on + strand, within GFF968at 284.147 kb on + strand, within GFF968at 284.148 kb on + strand, within GFF968at 284.148 kb on - strand, within GFF968at 284.148 kb on - strand, within GFF968at 284.148 kb on - strand, within GFF968at 284.148 kb on - strand, within GFF968at 284.148 kb on - strand, within GFF968at 284.148 kb on - strand, within GFF968at 284.468 kb on + strandat 284.469 kb on - strandat 284.516 kb on + strandat 284.517 kb on - strandat 284.540 kb on + strandat 284.548 kb on + strandat 284.548 kb on + strandat 284.556 kb on + strandat 284.556 kb on + strandat 284.556 kb on + strandat 284.556 kb on + strandat 284.556 kb on + strandat 284.556 kb on + strandat 284.556 kb on + strandat 284.556 kb on + strandat 284.556 kb on + strandat 284.556 kb on + strandat 284.556 kb on + strandat 284.557 kb on - strandat 284.557 kb on - strandat 284.557 kb on - strandat 284.557 kb on - strandat 284.557 kb on - strandat 284.557 kb on - strandat 284.557 kb on - strandat 284.557 kb on - strandat 284.557 kb on - strandat 284.557 kb on - strandat 284.567 kb on + strandat 284.567 kb on + strandat 284.567 kb on + strandat 284.567 kb on + strandat 284.567 kb on + strandat 284.567 kb on + strandat 284.568 kb on - strandat 284.568 kb on - strandat 284.568 kb on - strandat 284.881 kb on + strand, within GFF969at 284.881 kb on + strand, within GFF969at 284.881 kb on + strand, within GFF969at 284.882 kb on - strand, within GFF969at 284.882 kb on - strand, within GFF969at 284.882 kb on - strand, within GFF969at 284.929 kb on + strand, within GFF969at 284.929 kb on + strand, within GFF969at 284.929 kb on + strand, within GFF969at 284.929 kb on + strand, within GFF969at 284.929 kb on + strand, within GFF969at 284.929 kb on + strand, within GFF969at 284.929 kb on + strand, within GFF969at 284.929 kb on + strand, within GFF969at 284.929 kb on + strand, within GFF969at 284.929 kb on + strand, within GFF969at 284.929 kb on + strand, within GFF969at 284.929 kb on + strand, within GFF969at 284.929 kb on + strand, within GFF969at 284.929 kb on + strand, within GFF969at 284.929 kb on + strand, within GFF969at 284.929 kb on + strand, within GFF969at 284.929 kb on + strand, within GFF969at 284.930 kb on - strand, within GFF969at 284.930 kb on - strand, within GFF969at 284.930 kb on - strand, within GFF969at 284.930 kb on - strand, within GFF969at 284.930 kb on - strand, within GFF969at 284.930 kb on - strand, within GFF969at 284.930 kb on - strand, within GFF969at 284.930 kb on - strand, within GFF969at 284.930 kb on - strand, within GFF969at 284.930 kb on - strand, within GFF969at 284.930 kb on - strand, within GFF969at 284.930 kb on - strand, within GFF969at 284.938 kb on + strand, within GFF969at 284.938 kb on + strand, within GFF969at 284.938 kb on + strand, within GFF969at 284.938 kb on + strand, within GFF969at 284.938 kb on + strand, within GFF969at 284.938 kb on + strand, within GFF969at 284.938 kb on + strand, within GFF969at 284.938 kb on + strand, within GFF969at 284.938 kb on + strand, within GFF969at 284.938 kb on + strand, within GFF969at 284.938 kb on + strand, within GFF969at 284.938 kb on + strand, within GFF969at 284.938 kb on + strand, within GFF969at 284.938 kb on + strand, within GFF969at 284.938 kb on + strand, within GFF969at 284.938 kb on + strand, within GFF969at 284.938 kb on + strand, within GFF969at 284.938 kb on + strand, within GFF969at 284.938 kb on + strand, within GFF969at 284.938 kb on + strand, within GFF969at 284.938 kb on + strand, within GFF969at 284.938 kb on + strand, within GFF969at 284.938 kb on + strand, within GFF969at 284.938 kb on + strand, within GFF969at 284.938 kb on + strand, within GFF969at 284.938 kb on + strand, within GFF969at 284.938 kb on + strand, within GFF969at 284.938 kb on + strand, within GFF969at 284.938 kb on + strand, within GFF969at 284.938 kb on + strand, within GFF969at 284.938 kb on + strand, within GFF969at 284.938 kb on + strand, within GFF969at 284.938 kb on + strand, within GFF969at 284.938 kb on + strand, within GFF969at 284.938 kb on + strand, within GFF969at 284.938 kb on + strand, within GFF969at 284.938 kb on + strand, within GFF969at 284.938 kb on + strand, within GFF969at 284.938 kb on + strand, within GFF969at 284.938 kb on + strand, within GFF969at 284.938 kb on + strand, within GFF969at 284.938 kb on + strand, within GFF969at 284.938 kb on + strand, within GFF969at 284.938 kb on + strand, within GFF969at 284.938 kb on + strand, within GFF969at 284.938 kb on + strand, within GFF969at 284.939 kb on - strand, within GFF969at 284.939 kb on - strand, within GFF969at 284.939 kb on - strand, within GFF969at 284.939 kb on - strand, within GFF969at 284.939 kb on - strand, within GFF969at 284.939 kb on - strand, within GFF969at 284.939 kb on - strand, within GFF969at 284.939 kb on - strand, within GFF969at 284.939 kb on - strand, within GFF969at 284.939 kb on - strand, within GFF969at 284.939 kb on - strand, within GFF969at 284.939 kb on - strand, within GFF969at 284.939 kb on - strand, within GFF969at 284.939 kb on - strand, within GFF969at 284.939 kb on - strand, within GFF969at 284.939 kb on - strand, within GFF969at 284.939 kb on - strand, within GFF969at 284.939 kb on - strand, within GFF969at 284.939 kb on - strand, within GFF969at 284.939 kb on - strand, within GFF969at 284.939 kb on - strand, within GFF969at 284.939 kb on - strand, within GFF969at 284.939 kb on - strand, within GFF969at 284.939 kb on - strand, within GFF969at 284.939 kb on - strand, within GFF969at 284.939 kb on - strand, within GFF969at 284.939 kb on - strand, within GFF969at 284.939 kb on - strand, within GFF969at 284.939 kb on - strand, within GFF969at 284.939 kb on - strand, within GFF969at 284.939 kb on - strand, within GFF969at 284.939 kb on - strand, within GFF969at 284.939 kb on - strand, within GFF969at 284.939 kb on - strand, within GFF969at 284.939 kb on - strand, within GFF969at 284.939 kb on - strand, within GFF969at 284.939 kb on - strand, within GFF969at 284.939 kb on - strand, within GFF969at 284.939 kb on - strand, within GFF969at 284.939 kb on - strand, within GFF969at 284.939 kb on - strand, within GFF969at 284.944 kb on + strand, within GFF969at 284.945 kb on - strand, within GFF969at 285.025 kb on + strand, within GFF969at 285.025 kb on + strand, within GFF969at 285.025 kb on + strand, within GFF969at 285.025 kb on + strand, within GFF969at 285.025 kb on + strand, within GFF969at 285.025 kb on + strand, within GFF969at 285.025 kb on + strand, within GFF969at 285.025 kb on + strand, within GFF969at 285.026 kb on - strand, within GFF969at 285.026 kb on - strand, within GFF969at 285.026 kb on - strand, within GFF969at 285.026 kb on - strand, within GFF969at 285.026 kb on - strand, within GFF969at 285.026 kb on - strand, within GFF969at 285.026 kb on - strand, within GFF969at 285.026 kb on - strand, within GFF969at 285.495 kb on + strand, within GFF970at 285.495 kb on + strand, within GFF970at 285.495 kb on + strand, within GFF970at 285.495 kb on + strand, within GFF970at 285.495 kb on + strand, within GFF970at 285.495 kb on + strand, within GFF970at 285.495 kb on + strand, within GFF970at 285.495 kb on + strand, within GFF970at 285.496 kb on - strand, within GFF970at 285.496 kb on - strand, within GFF970at 285.496 kb on - strand, within GFF970at 285.496 kb on - strand, within GFF970at 285.496 kb on - strand, within GFF970at 285.496 kb on - strand, within GFF970at 285.496 kb on - strand, within GFF970at 285.612 kb on + strand, within GFF970at 285.612 kb on + strand, within GFF970at 285.613 kb on - strand, within GFF970at 285.867 kb on + strand, within GFF970at 285.867 kb on + strand, within GFF970at 285.867 kb on + strand, within GFF970at 285.867 kb on + strand, within GFF970at 285.868 kb on - strand, within GFF970at 286.101 kb on + strand, within GFF970at 286.101 kb on + strand, within GFF970at 286.101 kb on + strand, within GFF970at 286.101 kb on + strand, within GFF970at 286.101 kb on + strand, within GFF970at 286.101 kb on + strand, within GFF970at 286.101 kb on + strand, within GFF970at 286.101 kb on + strand, within GFF970at 286.101 kb on + strand, within GFF970at 286.102 kb on - strand, within GFF970at 286.102 kb on - strand, within GFF970at 286.102 kb on - strand, within GFF970at 286.102 kb on - strand, within GFF970at 286.102 kb on - strand, within GFF970at 286.102 kb on - strand, within GFF970at 286.102 kb on - strand, within GFF970

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
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284,144 + GFF968 0.75 -1.0
284,145 - GFF968 0.75 -1.2
284,145 - GFF968 0.75 +0.0
284,145 - GFF968 0.75 +1.6
284,147 + GFF968 0.75 -0.6
284,147 + GFF968 0.75 -2.3
284,147 + GFF968 0.75 -1.2
284,148 + GFF968 0.75 +1.6
284,148 - GFF968 0.75 -0.4
284,148 - GFF968 0.75 +0.6
284,148 - GFF968 0.75 +0.9
284,148 - GFF968 0.75 -1.2
284,148 - GFF968 0.75 -0.7
284,148 - GFF968 0.75 -1.2
284,468 + +0.6
284,469 - -0.1
284,516 + -0.4
284,517 - -1.2
284,540 + +3.4
284,548 + -0.7
284,548 + +1.2
284,556 + +0.7
284,556 + +0.7
284,556 + -2.3
284,556 + -0.6
284,556 + +0.1
284,556 + -0.5
284,556 + -2.3
284,556 + +0.1
284,556 + -0.1
284,556 + +1.3
284,556 + +1.0
284,557 - +1.3
284,557 - -0.5
284,557 - -0.6
284,557 - +0.7
284,557 - -0.4
284,557 - +0.0
284,557 - -0.6
284,557 - -0.7
284,557 - -0.9
284,557 - -0.1
284,567 + +0.2
284,567 + -0.8
284,567 + +1.6
284,567 + -0.6
284,567 + -0.2
284,567 + -0.2
284,568 - -0.6
284,568 - -0.6
284,568 - -0.6
284,881 + GFF969 0.55 -0.7
284,881 + GFF969 0.55 -0.3
284,881 + GFF969 0.55 +0.3
284,882 - GFF969 0.55 +1.6
284,882 - GFF969 0.55 -0.6
284,882 - GFF969 0.55 -0.4
284,929 + GFF969 0.63 -0.1
284,929 + GFF969 0.63 -0.8
284,929 + GFF969 0.63 +0.2
284,929 + GFF969 0.63 -0.4
284,929 + GFF969 0.63 +0.4
284,929 + GFF969 0.63 +1.4
284,929 + GFF969 0.63 +0.6
284,929 + GFF969 0.63 +0.2
284,929 + GFF969 0.63 -2.1
284,929 + GFF969 0.63 +1.1
284,929 + GFF969 0.63 +0.1
284,929 + GFF969 0.63 +0.4
284,929 + GFF969 0.63 -0.5
284,929 + GFF969 0.63 +0.3
284,929 + GFF969 0.63 +0.1
284,929 + GFF969 0.63 -0.5
284,929 + GFF969 0.63 +1.0
284,930 - GFF969 0.63 -0.4
284,930 - GFF969 0.63 -1.9
284,930 - GFF969 0.63 -0.2
284,930 - GFF969 0.63 +0.2
284,930 - GFF969 0.63 +0.6
284,930 - GFF969 0.63 +0.6
284,930 - GFF969 0.63 -0.0
284,930 - GFF969 0.63 -0.4
284,930 - GFF969 0.63 -1.3
284,930 - GFF969 0.63 +0.8
284,930 - GFF969 0.63 +1.4
284,930 - GFF969 0.63 +0.3
284,938 + GFF969 0.64 -2.9
284,938 + GFF969 0.64 -0.8
284,938 + GFF969 0.64 +2.2
284,938 + GFF969 0.64 +0.4
284,938 + GFF969 0.64 +0.3
284,938 + GFF969 0.64 -1.1
284,938 + GFF969 0.64 -0.2
284,938 + GFF969 0.64 +0.4
284,938 + GFF969 0.64 +0.1
284,938 + GFF969 0.64 +0.6
284,938 + GFF969 0.64 +0.2
284,938 + GFF969 0.64 +0.4
284,938 + GFF969 0.64 -0.0
284,938 + GFF969 0.64 -0.5
284,938 + GFF969 0.64 -0.4
284,938 + GFF969 0.64 +0.8
284,938 + GFF969 0.64 +0.9
284,938 + GFF969 0.64 +1.6
284,938 + GFF969 0.64 +0.3
284,938 + GFF969 0.64 -0.3
284,938 + GFF969 0.64 -0.4
284,938 + GFF969 0.64 -1.0
284,938 + GFF969 0.64 -0.2
284,938 + GFF969 0.64 +0.1
284,938 + GFF969 0.64 +1.4
284,938 + GFF969 0.64 -0.8
284,938 + GFF969 0.64 +0.7
284,938 + GFF969 0.64 -1.5
284,938 + GFF969 0.64 -0.2
284,938 + GFF969 0.64 -0.7
284,938 + GFF969 0.64 +0.0
284,938 + GFF969 0.64 -0.8
284,938 + GFF969 0.64 -0.3
284,938 + GFF969 0.64 -0.3
284,938 + GFF969 0.64 -0.7
284,938 + GFF969 0.64 +0.1
284,938 + GFF969 0.64 -0.0
284,938 + GFF969 0.64 +0.2
284,938 + GFF969 0.64 +0.6
284,938 + GFF969 0.64 +1.1
284,938 + GFF969 0.64 -1.9
284,938 + GFF969 0.64 -0.7
284,938 + GFF969 0.64 +0.6
284,938 + GFF969 0.64 -0.0
284,938 + GFF969 0.64 +1.1
284,938 + GFF969 0.64 -0.5
284,939 - GFF969 0.64 +0.1
284,939 - GFF969 0.64 +1.1
284,939 - GFF969 0.64 +0.3
284,939 - GFF969 0.64 -0.6
284,939 - GFF969 0.64 -0.6
284,939 - GFF969 0.64 +0.1
284,939 - GFF969 0.64 -1.1
284,939 - GFF969 0.64 +1.0
284,939 - GFF969 0.64 +1.6
284,939 - GFF969 0.64 -1.6
284,939 - GFF969 0.64 -0.7
284,939 - GFF969 0.64 -0.2
284,939 - GFF969 0.64 +0.7
284,939 - GFF969 0.64 +0.6
284,939 - GFF969 0.64 -0.6
284,939 - GFF969 0.64 -0.4
284,939 - GFF969 0.64 -0.1
284,939 - GFF969 0.64 -0.7
284,939 - GFF969 0.64 -0.7
284,939 - GFF969 0.64 +0.8
284,939 - GFF969 0.64 +0.8
284,939 - GFF969 0.64 +1.2
284,939 - GFF969 0.64 -0.6
284,939 - GFF969 0.64 +0.7
284,939 - GFF969 0.64 -1.2
284,939 - GFF969 0.64 +0.7
284,939 - GFF969 0.64 +1.6
284,939 - GFF969 0.64 +0.1
284,939 - GFF969 0.64 -0.5
284,939 - GFF969 0.64 -0.4
284,939 - GFF969 0.64 -2.2
284,939 - GFF969 0.64 -0.6
284,939 - GFF969 0.64 -0.4
284,939 - GFF969 0.64 +1.0
284,939 - GFF969 0.64 -0.2
284,939 - GFF969 0.64 +0.2
284,939 - GFF969 0.64 -0.6
284,939 - GFF969 0.64 +0.6
284,939 - GFF969 0.64 -0.8
284,939 - GFF969 0.64 +0.4
284,939 - GFF969 0.64 -1.0
284,944 + GFF969 0.65 +0.4
284,945 - GFF969 0.65 +0.9
285,025 + GFF969 0.79 +0.0
285,025 + GFF969 0.79 -0.4
285,025 + GFF969 0.79 -0.2
285,025 + GFF969 0.79 +0.0
285,025 + GFF969 0.79 -0.2
285,025 + GFF969 0.79 +0.9
285,025 + GFF969 0.79 -0.1
285,025 + GFF969 0.79 -0.9
285,026 - GFF969 0.79 +0.8
285,026 - GFF969 0.79 -1.3
285,026 - GFF969 0.79 +0.6
285,026 - GFF969 0.79 -1.3
285,026 - GFF969 0.79 -2.2
285,026 - GFF969 0.79 +0.3
285,026 - GFF969 0.79 -1.3
285,026 - GFF969 0.79 -0.9
285,495 + GFF970 0.19 +0.2
285,495 + GFF970 0.19 -1.0
285,495 + GFF970 0.19 +0.9
285,495 + GFF970 0.19 -0.3
285,495 + GFF970 0.19 +0.7
285,495 + GFF970 0.19 -0.8
285,495 + GFF970 0.19 +4.2
285,495 + GFF970 0.19 -0.3
285,496 - GFF970 0.19 -0.7
285,496 - GFF970 0.19 +0.0
285,496 - GFF970 0.19 +1.4
285,496 - GFF970 0.19 -0.7
285,496 - GFF970 0.19 -0.8
285,496 - GFF970 0.19 +0.3
285,496 - GFF970 0.19 -0.7
285,612 + GFF970 0.26 +0.8
285,612 + GFF970 0.26 -0.7
285,613 - GFF970 0.26 -1.7
285,867 + GFF970 0.40 -0.9
285,867 + GFF970 0.40 -0.4
285,867 + GFF970 0.40 +0.3
285,867 + GFF970 0.40 +1.0
285,868 - GFF970 0.40 +0.0
286,101 + GFF970 0.52 +1.3
286,101 + GFF970 0.52 -1.6
286,101 + GFF970 0.52 +0.6
286,101 + GFF970 0.52 -0.2
286,101 + GFF970 0.52 -0.9
286,101 + GFF970 0.52 -0.7
286,101 + GFF970 0.52 -0.9
286,101 + GFF970 0.52 -0.4
286,101 + GFF970 0.52 +0.6
286,102 - GFF970 0.52 -0.6
286,102 - GFF970 0.52 +1.6
286,102 - GFF970 0.52 +0.0
286,102 - GFF970 0.52 -1.9
286,102 - GFF970 0.52 -1.0
286,102 - GFF970 0.52 -1.2
286,102 - GFF970 0.52 -0.6

Or see this region's nucleotide sequence