Strain Fitness in Variovorax sp. SCN45 around GFF768

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF767 and GFF768 are separated by 14 nucleotidesGFF768 and GFF769 are separated by 33 nucleotidesGFF769 and GFF770 are separated by 41 nucleotides GFF767 - Alpha-amylase (EC 3.2.1.1), at 32,401 to 34,470 GFF767 GFF768 - Trehalose synthase (EC 5.4.99.16), at 34,485 to 37,829 GFF768 GFF769 - Conserved TM helix, at 37,863 to 38,645 GFF769 GFF770 - Limit dextrin alpha-1,6-maltotetraose-hydrolase (EC 3.2.1.196), at 38,687 to 40,849 GFF770 Position (kb) 34 35 36 37 38Strain fitness (log2 ratio) -2 -1 0 1 2at 33.502 kb on + strand, within GFF767at 33.502 kb on + strand, within GFF767at 33.502 kb on + strand, within GFF767at 33.503 kb on - strand, within GFF767at 33.503 kb on - strand, within GFF767at 33.503 kb on - strand, within GFF767at 33.503 kb on - strand, within GFF767at 33.514 kb on + strand, within GFF767at 33.514 kb on + strand, within GFF767at 33.514 kb on + strand, within GFF767at 33.514 kb on + strand, within GFF767at 33.514 kb on + strand, within GFF767at 33.515 kb on - strand, within GFF767at 33.763 kb on + strand, within GFF767at 33.763 kb on + strand, within GFF767at 33.763 kb on + strand, within GFF767at 33.763 kb on + strand, within GFF767at 33.763 kb on + strand, within GFF767at 33.763 kb on + strand, within GFF767at 33.764 kb on - strand, within GFF767at 33.764 kb on - strand, within GFF767at 33.764 kb on - strand, within GFF767at 33.764 kb on - strand, within GFF767at 33.769 kb on + strand, within GFF767at 33.770 kb on - strand, within GFF767at 33.770 kb on - strand, within GFF767at 33.770 kb on - strand, within GFF767at 33.809 kb on - strand, within GFF767at 33.809 kb on - strand, within GFF767at 33.809 kb on - strand, within GFF767at 33.809 kb on - strand, within GFF767at 33.860 kb on + strand, within GFF767at 33.860 kb on + strand, within GFF767at 33.860 kb on + strand, within GFF767at 33.860 kb on + strand, within GFF767at 33.861 kb on - strand, within GFF767at 33.861 kb on - strand, within GFF767at 33.919 kb on + strand, within GFF767at 33.919 kb on + strand, within GFF767at 33.919 kb on + strand, within GFF767at 33.919 kb on + strand, within GFF767at 33.919 kb on + strand, within GFF767at 33.920 kb on - strand, within GFF767at 33.920 kb on - strand, within GFF767at 33.961 kb on + strand, within GFF767at 33.970 kb on + strand, within GFF767at 33.970 kb on + strand, within GFF767at 33.983 kb on - strand, within GFF767at 34.027 kb on + strand, within GFF767at 34.027 kb on + strand, within GFF767at 34.045 kb on + strand, within GFF767at 34.045 kb on + strand, within GFF767at 34.046 kb on - strand, within GFF767at 34.192 kb on + strand, within GFF767at 34.378 kb on + strandat 34.378 kb on + strandat 34.378 kb on + strandat 34.378 kb on + strandat 34.460 kb on - strandat 34.460 kb on - strandat 34.572 kb on + strandat 34.573 kb on - strandat 34.740 kb on + strandat 34.761 kb on + strandat 34.917 kb on + strand, within GFF768at 34.917 kb on + strand, within GFF768at 34.918 kb on - strand, within GFF768at 34.918 kb on - strand, within GFF768at 34.918 kb on - strand, within GFF768at 34.918 kb on - strand, within GFF768at 34.918 kb on - strand, within GFF768at 34.918 kb on - strand, within GFF768at 35.016 kb on + strand, within GFF768at 35.017 kb on - strand, within GFF768at 35.017 kb on - strand, within GFF768at 35.019 kb on + strand, within GFF768at 35.019 kb on + strand, within GFF768at 35.020 kb on - strand, within GFF768at 35.020 kb on - strand, within GFF768at 35.020 kb on - strand, within GFF768at 35.144 kb on + strand, within GFF768at 35.152 kb on - strand, within GFF768at 35.241 kb on + strand, within GFF768at 35.241 kb on + strand, within GFF768at 35.242 kb on - strand, within GFF768at 35.242 kb on - strand, within GFF768at 35.242 kb on - strand, within GFF768at 35.299 kb on - strand, within GFF768at 35.358 kb on + strand, within GFF768at 35.358 kb on + strand, within GFF768at 35.358 kb on + strand, within GFF768at 35.359 kb on - strand, within GFF768at 35.359 kb on - strand, within GFF768at 35.359 kb on - strand, within GFF768at 35.359 kb on - strand, within GFF768at 35.359 kb on - strand, within GFF768at 35.359 kb on - strand, within GFF768at 35.359 kb on - strand, within GFF768at 35.359 kb on - strand, within GFF768at 35.359 kb on - strand, within GFF768at 35.359 kb on - strand, within GFF768at 35.505 kb on + strand, within GFF768at 35.505 kb on + strand, within GFF768at 35.505 kb on + strand, within GFF768at 35.511 kb on + strand, within GFF768at 35.511 kb on + strand, within GFF768at 35.511 kb on + strand, within GFF768at 35.511 kb on + strand, within GFF768at 35.511 kb on + strand, within GFF768at 35.511 kb on + strand, within GFF768at 35.511 kb on + strand, within GFF768at 35.511 kb on + strand, within GFF768at 35.511 kb on + strand, within GFF768at 35.511 kb on + strand, within GFF768at 35.511 kb on + strand, within GFF768at 35.511 kb on + strand, within GFF768at 35.511 kb on + strand, within GFF768at 35.511 kb on + strand, within GFF768at 35.512 kb on - strand, within GFF768at 35.512 kb on - strand, within GFF768at 35.512 kb on - strand, within GFF768at 35.512 kb on - strand, within GFF768at 35.521 kb on - strand, within GFF768at 35.652 kb on + strand, within GFF768at 35.653 kb on - strand, within GFF768at 35.778 kb on + strand, within GFF768at 35.805 kb on + strand, within GFF768at 35.805 kb on + strand, within GFF768at 35.806 kb on - strand, within GFF768at 35.806 kb on - strand, within GFF768at 35.806 kb on - strand, within GFF768at 35.961 kb on + strand, within GFF768at 36.354 kb on + strand, within GFF768at 36.355 kb on - strand, within GFF768at 36.355 kb on - strand, within GFF768at 36.355 kb on - strand, within GFF768at 36.600 kb on + strand, within GFF768at 36.600 kb on + strand, within GFF768at 36.909 kb on + strand, within GFF768at 36.910 kb on - strand, within GFF768at 36.957 kb on + strand, within GFF768at 36.957 kb on + strand, within GFF768at 36.957 kb on + strand, within GFF768at 36.957 kb on + strand, within GFF768at 36.958 kb on - strand, within GFF768at 36.958 kb on - strand, within GFF768at 36.958 kb on - strand, within GFF768at 36.987 kb on + strand, within GFF768at 36.988 kb on - strand, within GFF768at 37.402 kb on - strand, within GFF768at 37.542 kb on + strandat 37.542 kb on + strandat 37.542 kb on + strandat 37.542 kb on + strandat 37.543 kb on - strandat 37.543 kb on - strandat 37.543 kb on - strandat 37.750 kb on - strandat 37.908 kb on + strandat 37.909 kb on - strandat 37.909 kb on - strandat 38.118 kb on + strand, within GFF769at 38.175 kb on + strand, within GFF769at 38.175 kb on + strand, within GFF769at 38.175 kb on + strand, within GFF769at 38.175 kb on + strand, within GFF769at 38.175 kb on + strand, within GFF769at 38.175 kb on + strand, within GFF769at 38.292 kb on + strand, within GFF769at 38.603 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
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33,502 + GFF767 0.53 -0.0
33,502 + GFF767 0.53 -1.2
33,502 + GFF767 0.53 -0.1
33,503 - GFF767 0.53 -0.4
33,503 - GFF767 0.53 -1.3
33,503 - GFF767 0.53 -1.0
33,503 - GFF767 0.53 +0.4
33,514 + GFF767 0.54 +0.4
33,514 + GFF767 0.54 -0.3
33,514 + GFF767 0.54 +0.2
33,514 + GFF767 0.54 -0.4
33,514 + GFF767 0.54 -0.6
33,515 - GFF767 0.54 -0.8
33,763 + GFF767 0.66 -0.1
33,763 + GFF767 0.66 -0.5
33,763 + GFF767 0.66 -1.6
33,763 + GFF767 0.66 +0.1
33,763 + GFF767 0.66 -0.5
33,763 + GFF767 0.66 -0.7
33,764 - GFF767 0.66 +0.6
33,764 - GFF767 0.66 -0.4
33,764 - GFF767 0.66 -1.4
33,764 - GFF767 0.66 +1.0
33,769 + GFF767 0.66 +0.4
33,770 - GFF767 0.66 -0.2
33,770 - GFF767 0.66 -1.2
33,770 - GFF767 0.66 -0.4
33,809 - GFF767 0.68 +0.0
33,809 - GFF767 0.68 +0.5
33,809 - GFF767 0.68 -1.0
33,809 - GFF767 0.68 +0.8
33,860 + GFF767 0.70 -1.2
33,860 + GFF767 0.70 -2.5
33,860 + GFF767 0.70 -1.0
33,860 + GFF767 0.70 -2.4
33,861 - GFF767 0.71 -0.6
33,861 - GFF767 0.71 -0.2
33,919 + GFF767 0.73 -0.4
33,919 + GFF767 0.73 +0.1
33,919 + GFF767 0.73 -0.4
33,919 + GFF767 0.73 -0.9
33,919 + GFF767 0.73 -1.9
33,920 - GFF767 0.73 -0.8
33,920 - GFF767 0.73 +0.8
33,961 + GFF767 0.75 -1.3
33,970 + GFF767 0.76 -0.2
33,970 + GFF767 0.76 +0.5
33,983 - GFF767 0.76 +0.0
34,027 + GFF767 0.79 -1.0
34,027 + GFF767 0.79 -1.6
34,045 + GFF767 0.79 -2.1
34,045 + GFF767 0.79 -0.2
34,046 - GFF767 0.79 -0.1
34,192 + GFF767 0.87 -0.7
34,378 + +0.0
34,378 + +1.1
34,378 + -0.5
34,378 + +0.7
34,460 - +0.7
34,460 - +1.0
34,572 + -0.3
34,573 - -0.4
34,740 + -0.4
34,761 + -0.1
34,917 + GFF768 0.13 +0.0
34,917 + GFF768 0.13 -1.1
34,918 - GFF768 0.13 -0.7
34,918 - GFF768 0.13 +2.4
34,918 - GFF768 0.13 -0.3
34,918 - GFF768 0.13 +0.1
34,918 - GFF768 0.13 -0.8
34,918 - GFF768 0.13 -0.3
35,016 + GFF768 0.16 +0.2
35,017 - GFF768 0.16 -0.4
35,017 - GFF768 0.16 -0.7
35,019 + GFF768 0.16 -2.1
35,019 + GFF768 0.16 -0.6
35,020 - GFF768 0.16 -1.2
35,020 - GFF768 0.16 -0.2
35,020 - GFF768 0.16 -0.1
35,144 + GFF768 0.20 -0.7
35,152 - GFF768 0.20 -0.1
35,241 + GFF768 0.23 -0.8
35,241 + GFF768 0.23 -0.0
35,242 - GFF768 0.23 -1.3
35,242 - GFF768 0.23 +0.4
35,242 - GFF768 0.23 -1.0
35,299 - GFF768 0.24 -1.2
35,358 + GFF768 0.26 +2.6
35,358 + GFF768 0.26 +0.0
35,358 + GFF768 0.26 -1.6
35,359 - GFF768 0.26 -0.7
35,359 - GFF768 0.26 -0.7
35,359 - GFF768 0.26 -0.6
35,359 - GFF768 0.26 -0.9
35,359 - GFF768 0.26 -1.1
35,359 - GFF768 0.26 -1.1
35,359 - GFF768 0.26 +1.3
35,359 - GFF768 0.26 -1.6
35,359 - GFF768 0.26 -0.6
35,359 - GFF768 0.26 +0.6
35,505 + GFF768 0.30 +0.0
35,505 + GFF768 0.30 +0.0
35,505 + GFF768 0.30 +0.4
35,511 + GFF768 0.31 -0.2
35,511 + GFF768 0.31 +0.4
35,511 + GFF768 0.31 -0.5
35,511 + GFF768 0.31 -0.2
35,511 + GFF768 0.31 +0.8
35,511 + GFF768 0.31 -2.1
35,511 + GFF768 0.31 +0.2
35,511 + GFF768 0.31 +0.6
35,511 + GFF768 0.31 -0.6
35,511 + GFF768 0.31 +0.0
35,511 + GFF768 0.31 -0.1
35,511 + GFF768 0.31 -0.8
35,511 + GFF768 0.31 -0.5
35,511 + GFF768 0.31 -0.8
35,512 - GFF768 0.31 +0.3
35,512 - GFF768 0.31 -0.9
35,512 - GFF768 0.31 -0.3
35,512 - GFF768 0.31 -0.8
35,521 - GFF768 0.31 -0.3
35,652 + GFF768 0.35 +1.6
35,653 - GFF768 0.35 -0.4
35,778 + GFF768 0.39 +0.6
35,805 + GFF768 0.39 +0.3
35,805 + GFF768 0.39 -0.2
35,806 - GFF768 0.39 -1.0
35,806 - GFF768 0.39 +0.5
35,806 - GFF768 0.39 +2.4
35,961 + GFF768 0.44 -0.9
36,354 + GFF768 0.56 -0.2
36,355 - GFF768 0.56 +1.1
36,355 - GFF768 0.56 -0.8
36,355 - GFF768 0.56 -0.6
36,600 + GFF768 0.63 -0.3
36,600 + GFF768 0.63 -2.0
36,909 + GFF768 0.72 -0.7
36,910 - GFF768 0.72 +0.2
36,957 + GFF768 0.74 -0.7
36,957 + GFF768 0.74 -0.0
36,957 + GFF768 0.74 +2.2
36,957 + GFF768 0.74 +0.1
36,958 - GFF768 0.74 +0.2
36,958 - GFF768 0.74 +1.6
36,958 - GFF768 0.74 -0.4
36,987 + GFF768 0.75 -0.4
36,988 - GFF768 0.75 -1.2
37,402 - GFF768 0.87 -1.1
37,542 + +0.4
37,542 + -0.2
37,542 + -0.8
37,542 + -0.1
37,543 - -0.6
37,543 - -0.4
37,543 - -0.4
37,750 - -0.5
37,908 + +1.1
37,909 - +0.8
37,909 - +0.9
38,118 + GFF769 0.33 +0.1
38,175 + GFF769 0.40 +1.4
38,175 + GFF769 0.40 +0.1
38,175 + GFF769 0.40 +0.1
38,175 + GFF769 0.40 +0.4
38,175 + GFF769 0.40 +0.5
38,175 + GFF769 0.40 -1.8
38,292 + GFF769 0.55 +0.8
38,603 + +1.9

Or see this region's nucleotide sequence