Strain Fitness in Variovorax sp. SCN45 around GFF7373

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF7371 and GFF7372 are separated by 1 nucleotidesGFF7372 and GFF7373 are separated by 72 nucleotidesGFF7373 and GFF7374 are separated by 16 nucleotides GFF7371 - Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5), at 734 to 1,546 GFF7371 GFF7372 - Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5), at 1,548 to 2,186 GFF7372 GFF7373 - CaiB/BaiF family protein, at 2,259 to 3,650 GFF7373 GFF7374 - FIG00984748: hypothetical protein, at 3,667 to 4,743 GFF7374 Position (kb) 2 3 4Strain fitness (log2 ratio) -3 -2 -1 0 1at 1.361 kb on + strand, within GFF7371at 1.361 kb on + strand, within GFF7371at 1.361 kb on + strand, within GFF7371at 1.362 kb on - strand, within GFF7371at 1.362 kb on - strand, within GFF7371at 1.362 kb on - strand, within GFF7371at 1.362 kb on - strand, within GFF7371at 1.362 kb on - strand, within GFF7371at 1.362 kb on - strand, within GFF7371at 1.362 kb on - strand, within GFF7371at 1.362 kb on - strand, within GFF7371at 1.608 kb on + strandat 1.608 kb on + strandat 1.608 kb on + strandat 1.608 kb on + strandat 1.608 kb on + strandat 1.608 kb on + strandat 1.608 kb on + strandat 1.608 kb on + strandat 1.609 kb on - strandat 1.609 kb on - strandat 1.609 kb on - strandat 1.609 kb on - strandat 1.634 kb on + strand, within GFF7372at 1.634 kb on + strand, within GFF7372at 1.634 kb on + strand, within GFF7372at 1.635 kb on - strand, within GFF7372at 1.635 kb on - strand, within GFF7372at 2.184 kb on + strandat 2.185 kb on - strandat 2.524 kb on + strand, within GFF7373at 2.525 kb on - strand, within GFF7373at 3.097 kb on + strand, within GFF7373at 3.097 kb on + strand, within GFF7373at 3.097 kb on + strand, within GFF7373at 3.097 kb on + strand, within GFF7373at 3.097 kb on + strand, within GFF7373at 3.097 kb on + strand, within GFF7373at 3.098 kb on - strand, within GFF7373at 3.098 kb on - strand, within GFF7373at 3.098 kb on - strand, within GFF7373at 3.098 kb on - strand, within GFF7373at 3.098 kb on - strand, within GFF7373at 3.098 kb on - strand, within GFF7373at 3.098 kb on - strand, within GFF7373at 3.098 kb on - strand, within GFF7373at 3.348 kb on + strand, within GFF7373at 3.348 kb on + strand, within GFF7373at 3.417 kb on - strand, within GFF7373at 3.508 kb on - strand, within GFF7373at 3.558 kb on - strandat 3.558 kb on - strandat 3.558 kb on - strandat 3.673 kb on + strandat 4.009 kb on + strand, within GFF7374at 4.111 kb on + strand, within GFF7374at 4.111 kb on + strand, within GFF7374at 4.111 kb on + strand, within GFF7374at 4.111 kb on + strand, within GFF7374at 4.111 kb on + strand, within GFF7374at 4.112 kb on - strand, within GFF7374at 4.112 kb on - strand, within GFF7374at 4.112 kb on - strand, within GFF7374at 4.114 kb on + strand, within GFF7374at 4.114 kb on + strand, within GFF7374at 4.114 kb on + strand, within GFF7374at 4.114 kb on + strand, within GFF7374at 4.114 kb on + strand, within GFF7374at 4.115 kb on - strand, within GFF7374at 4.115 kb on - strand, within GFF7374at 4.115 kb on - strand, within GFF7374at 4.115 kb on - strand, within GFF7374at 4.231 kb on + strand, within GFF7374at 4.231 kb on + strand, within GFF7374at 4.231 kb on + strand, within GFF7374at 4.345 kb on + strand, within GFF7374at 4.345 kb on + strand, within GFF7374at 4.345 kb on + strand, within GFF7374at 4.346 kb on - strand, within GFF7374at 4.346 kb on - strand, within GFF7374at 4.346 kb on - strand, within GFF7374at 4.346 kb on - strand, within GFF7374at 4.582 kb on + strand, within GFF7374at 4.582 kb on + strand, within GFF7374at 4.582 kb on + strand, within GFF7374at 4.582 kb on + strand, within GFF7374at 4.583 kb on - strand, within GFF7374at 4.583 kb on - strand, within GFF7374at 4.583 kb on - strand, within GFF7374at 4.583 kb on - strand, within GFF7374at 4.583 kb on - strand, within GFF7374at 4.583 kb on - strand, within GFF7374at 4.583 kb on - strand, within GFF7374at 4.583 kb on - strand, within GFF7374at 4.607 kb on - strand, within GFF7374at 4.615 kb on + strand, within GFF7374at 4.616 kb on - strand, within GFF7374

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
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1,361 + GFF7371 0.77 -2.4
1,361 + GFF7371 0.77 -0.1
1,361 + GFF7371 0.77 -0.4
1,362 - GFF7371 0.77 -1.3
1,362 - GFF7371 0.77 +1.6
1,362 - GFF7371 0.77 +0.2
1,362 - GFF7371 0.77 +0.5
1,362 - GFF7371 0.77 -1.2
1,362 - GFF7371 0.77 +0.4
1,362 - GFF7371 0.77 -0.6
1,362 - GFF7371 0.77 -0.7
1,608 + +0.2
1,608 + +0.9
1,608 + +0.2
1,608 + -0.8
1,608 + -0.9
1,608 + -1.0
1,608 + -0.1
1,608 + +0.2
1,609 - -0.6
1,609 - -0.4
1,609 - -0.4
1,609 - -0.4
1,634 + GFF7372 0.13 -0.2
1,634 + GFF7372 0.13 +0.0
1,634 + GFF7372 0.13 +0.2
1,635 - GFF7372 0.14 -1.4
1,635 - GFF7372 0.14 -0.1
2,184 + -0.8
2,185 - -0.4
2,524 + GFF7373 0.19 -0.7
2,525 - GFF7373 0.19 +0.2
3,097 + GFF7373 0.60 -0.8
3,097 + GFF7373 0.60 -2.5
3,097 + GFF7373 0.60 -1.5
3,097 + GFF7373 0.60 +0.2
3,097 + GFF7373 0.60 -0.5
3,097 + GFF7373 0.60 -3.0
3,098 - GFF7373 0.60 -1.6
3,098 - GFF7373 0.60 +0.0
3,098 - GFF7373 0.60 +0.5
3,098 - GFF7373 0.60 -0.9
3,098 - GFF7373 0.60 -0.2
3,098 - GFF7373 0.60 +0.4
3,098 - GFF7373 0.60 -0.6
3,098 - GFF7373 0.60 -0.5
3,348 + GFF7373 0.78 -0.2
3,348 + GFF7373 0.78 +0.0
3,417 - GFF7373 0.83 -0.4
3,508 - GFF7373 0.90 -0.5
3,558 - +0.2
3,558 - -2.3
3,558 - +0.2
3,673 + -0.2
4,009 + GFF7374 0.32 -1.6
4,111 + GFF7374 0.41 -1.2
4,111 + GFF7374 0.41 +1.4
4,111 + GFF7374 0.41 -1.2
4,111 + GFF7374 0.41 -0.8
4,111 + GFF7374 0.41 +0.0
4,112 - GFF7374 0.41 -0.1
4,112 - GFF7374 0.41 -0.4
4,112 - GFF7374 0.41 +0.3
4,114 + GFF7374 0.42 +0.3
4,114 + GFF7374 0.42 +0.2
4,114 + GFF7374 0.42 -0.2
4,114 + GFF7374 0.42 -1.0
4,114 + GFF7374 0.42 -0.1
4,115 - GFF7374 0.42 -0.4
4,115 - GFF7374 0.42 -0.4
4,115 - GFF7374 0.42 -0.4
4,115 - GFF7374 0.42 +0.2
4,231 + GFF7374 0.52 -1.8
4,231 + GFF7374 0.52 -1.2
4,231 + GFF7374 0.52 -0.1
4,345 + GFF7374 0.63 -0.7
4,345 + GFF7374 0.63 +0.2
4,345 + GFF7374 0.63 +0.2
4,346 - GFF7374 0.63 +0.8
4,346 - GFF7374 0.63 -0.6
4,346 - GFF7374 0.63 +0.2
4,346 - GFF7374 0.63 -0.7
4,582 + GFF7374 0.85 -0.1
4,582 + GFF7374 0.85 -2.1
4,582 + GFF7374 0.85 +0.6
4,582 + GFF7374 0.85 +1.1
4,583 - GFF7374 0.85 +0.2
4,583 - GFF7374 0.85 +0.8
4,583 - GFF7374 0.85 -2.8
4,583 - GFF7374 0.85 -0.1
4,583 - GFF7374 0.85 +1.0
4,583 - GFF7374 0.85 -0.7
4,583 - GFF7374 0.85 +0.1
4,583 - GFF7374 0.85 +0.2
4,607 - GFF7374 0.87 -0.2
4,615 + GFF7374 0.88 -0.5
4,616 - GFF7374 0.88 -1.0

Or see this region's nucleotide sequence