Strain Fitness in Variovorax sp. SCN45 around GFF6624

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
68,627	+		GFF6623	0.45	-1.2
68,752	+		GFF6623	0.58	-1.0
68,964	+		GFF6623	0.79	-0.5
68,964	+		GFF6623	0.79	-0.5
68,964	+		GFF6623	0.79	-2.5
68,965	-		GFF6623	0.79	+0.6
68,965	-		GFF6623	0.79	-0.5
69,024	-		GFF6623	0.85	+0.1
69,024	-		GFF6623	0.85	-0.2
69,024	-		GFF6623	0.85	-0.7
69,113	-				-0.5
69,185	+				+0.8
69,185	+				-0.1
69,185	+				-1.7
69,185	+				-0.1
69,185	+				-0.1
69,186	-				-0.4
69,186	-				+0.8
69,186	-				+0.3
69,186	-				+0.6
69,727	-		GFF6624	0.52	+0.0
69,727	-		GFF6624	0.52	+0.1
69,727	-		GFF6624	0.52	+0.7
69,748	+		GFF6624	0.54	+0.3
69,900	+		GFF6624	0.69	-0.3
69,900	+		GFF6624	0.69	-0.8
69,901	-		GFF6624	0.69	+0.9
69,901	-		GFF6624	0.69	+0.6
69,901	-		GFF6624	0.69	-0.0
69,901	-		GFF6624	0.69	-0.4
69,941	+		GFF6624	0.73	-1.7
69,942	-		GFF6624	0.73	+1.0
70,296	+				-0.2
70,296	+				-0.6
70,296	+				+0.5
70,297	-				-0.1
70,297	-				-0.9
70,398	+				-0.4
70,399	-				+0.6
70,436	+				-1.2
70,530	+				-0.8
70,530	+				+0.2
70,530	+				-0.3
70,531	-				+2.2
70,531	-				+0.3
70,690	-		GFF6625	0.22	+0.8
70,815	+		GFF6625	0.32	-1.1
70,815	+		GFF6625	0.32	-0.5
70,816	-		GFF6625	0.32	+0.6
70,816	-		GFF6625	0.32	-0.2
70,836	+		GFF6625	0.33	-2.0
70,836	+		GFF6625	0.33	+1.9
70,836	+		GFF6625	0.33	-0.6
70,836	+		GFF6625	0.33	-0.2
70,836	+		GFF6625	0.33	+0.0
70,837	-		GFF6625	0.33	-0.6
70,837	-		GFF6625	0.33	+0.5
70,837	-		GFF6625	0.33	+1.0
70,837	-		GFF6625	0.33	-0.6
70,939	-		GFF6625	0.42	+0.1
70,982	+		GFF6625	0.45	+0.3
70,983	-		GFF6625	0.45	-0.2
71,205	+		GFF6625	0.63	+0.4
71,206	-		GFF6625	0.63	-1.9