Strain Fitness in Variovorax sp. SCN45 around GFF6341

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
4,390	+				+1.1
4,390	+				-0.7
4,391	-				-0.8
4,391	-				-0.6
4,439	-				-0.3
4,661	-				-0.2
4,661	-				-0.2
4,796	+				+1.1
4,796	+				+0.0
4,796	+				-1.7
4,796	+				+0.7
4,796	+				-0.4
4,797	-				-0.6
4,797	-				-0.8
4,797	-				-0.6
5,171	+				-1.3
5,171	+				+0.1
5,172	-				-1.2
5,172	-				+0.5
5,172	-				-0.2
5,337	+		GFF6341	0.17	-0.6
5,337	+		GFF6341	0.17	+0.6
5,338	-		GFF6341	0.18	-0.1
5,338	-		GFF6341	0.18	+0.1
5,338	-		GFF6341	0.18	-0.9
5,368	+		GFF6341	0.29	+0.5
5,368	+		GFF6341	0.29	+0.2
5,368	+		GFF6341	0.29	-0.6
5,368	+		GFF6341	0.29	+0.7
5,368	+		GFF6341	0.29	-0.4
5,368	+		GFF6341	0.29	-0.0
5,369	-		GFF6341	0.30	-0.2
5,369	-		GFF6341	0.30	-0.7
5,369	-		GFF6341	0.30	-0.9
5,369	-		GFF6341	0.30	+0.4
5,369	-		GFF6341	0.30	-0.8
5,372	+		GFF6341	0.31	-0.9
5,372	+		GFF6341	0.31	-0.2
5,372	+		GFF6341	0.31	+0.3
5,373	-		GFF6341	0.31	-1.8
5,373	-		GFF6341	0.31	+0.7
5,373	-		GFF6341	0.31	+0.7
5,373	-		GFF6341	0.31	+1.4
5,373	-		GFF6341	0.31	+0.3
5,373	-		GFF6341	0.31	-0.1
5,397	-		GFF6341	0.41	-0.0
5,404	+		GFF6341	0.43	+1.0
5,478	+		GFF6341	0.72	+1.3
5,478	+		GFF6341	0.72	-0.7
5,478	+		GFF6341	0.72	-0.3
5,479	-		GFF6341	0.72	+0.5
5,479	-		GFF6341	0.72	+0.6
5,479	-		GFF6341	0.72	-1.0
5,494	-		GFF6341	0.78	+0.6
5,520	+		GFF6341	0.88	-0.9
5,521	-		GFF6341	0.89	+0.3
5,595	+				-1.3
5,595	+				-0.0
5,596	-				+0.6
5,596	-				-1.1
5,596	-				+0.3
5,596	-				+0.3
5,796	+				-0.4
5,797	-				-0.7
5,810	-				-0.2
5,865	+				+0.1
5,865	+				+0.0
5,866	-				-1.4
5,930	+				+0.7
5,931	-				-0.2
5,931	-				+1.5
5,931	-				+0.2
5,931	-				+0.7
5,988	+				-0.1
5,988	+				-0.9
5,989	-				-1.4
5,989	-				-1.4
5,989	-				+0.1
6,044	+				-0.1
6,045	-				-1.9
6,052	+				-0.7
6,052	+				-1.5
6,053	-				+1.1
6,053	-				-0.5
6,053	-				-0.3
6,053	-				-0.3
6,061	+				-0.6
6,061	+				-2.4
6,080	-				-0.1
6,080	-				-0.6
6,080	-				+1.3
6,103	+				-0.0
6,104	-				-0.5
6,104	-				+0.5
6,104	-				-2.5
6,213	+				+2.9
6,213	+				+0.1
6,214	-				-0.1
6,214	-				+0.3
6,214	-				-0.2
6,214	-				-1.2
6,214	-				-1.4
6,263	+				-0.3
6,263	+				+1.3
6,263	+				+0.4
6,263	+				+0.3
6,263	+				-0.1
6,263	+				-2.1
6,263	+				-0.1
6,263	+				+0.0
6,263	+				+0.1
6,263	+				-1.3
6,263	+				+0.1
6,264	-				+0.7
6,264	-				-0.1
6,264	-				-1.4
6,264	-				-0.0
6,264	-				-0.2
6,278	+				-0.2
6,278	+				-0.1
6,278	+				-0.5
6,278	+				-0.8
6,278	+				-0.2
6,278	+				-0.4
6,278	+				-0.9
6,279	-				-1.8
6,279	-				-0.1
6,350	-				-0.3
6,360	+				+0.2
6,360	+				+0.5
6,360	+				-1.4
6,360	+				+0.5
6,360	+				+0.2
6,360	+				-0.4
6,360	+				-0.0
6,360	+				+1.5
6,361	-				+0.3
6,361	-				-1.3
6,420	+		GFF6342	0.21	-1.1
6,420	+		GFF6342	0.21	-1.8
6,421	-		GFF6342	0.21	+0.6
6,421	-		GFF6342	0.21	-0.4
6,421	-		GFF6342	0.21	-0.2
6,427	+		GFF6342	0.23	-1.3
6,427	+		GFF6342	0.23	+1.1
6,428	-		GFF6342	0.23	-1.1