Strain Fitness in Variovorax sp. SCN45 around GFF6295

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
83,472	+				-0.3
83,472	+				-0.3
83,473	-				-0.3
83,567	+				-0.7
83,567	+				+0.1
83,567	+				-0.5
83,567	+				-1.7
83,567	+				-0.3
83,567	+				-1.1
83,568	-				+0.1
83,568	-				-1.1
83,568	-				+0.0
83,568	-				-0.2
83,568	-				-0.2
83,568	-				-0.9
83,568	-				-0.1
83,568	-				+0.2
83,568	-				+0.1
83,568	-				-1.6
83,568	-				+0.0
83,568	-				-1.8
83,574	+				+0.3
83,574	+				-0.6
83,574	+				-0.2
83,574	+				+0.5
83,574	+				-0.1
83,574	+				+1.6
83,574	+				-0.3
83,574	+				-0.7
83,575	-				+0.1
83,575	-				-0.4
83,575	-				+0.1
83,575	-				-1.4
83,575	-				-0.1
83,575	-				+0.3
83,575	-				-0.2
83,575	-				-0.5
83,575	-				-0.8
83,575	-				+0.5
83,710	+		GFF6294	0.14	-0.0
83,830	+		GFF6294	0.30	+0.6
83,830	+		GFF6294	0.30	-1.3
83,830	+		GFF6294	0.30	-0.1
83,830	+		GFF6294	0.30	-0.5
83,830	+		GFF6294	0.30	-1.6
83,830	+		GFF6294	0.30	-1.0
83,830	+		GFF6294	0.30	-0.9
83,830	+		GFF6294	0.30	-2.3
83,831	-		GFF6294	0.30	-0.1
83,831	-		GFF6294	0.30	-0.9
83,831	-		GFF6294	0.30	+1.9
83,831	-		GFF6294	0.30	-1.4
83,831	-		GFF6294	0.30	-0.7
83,831	-		GFF6294	0.30	-0.7
83,831	-		GFF6294	0.30	-1.3
83,831	-		GFF6294	0.30	-1.3
83,831	-		GFF6294	0.30	+0.7
83,831	-		GFF6294	0.30	+0.1
86,135	+				-0.6
86,135	+				-0.2
86,136	-				+0.1
86,136	-				+1.0
86,189	+				-0.6
86,189	+				-0.4
86,189	+				-0.2
86,189	+				-0.3
86,189	+				-0.5
86,189	+				-0.0
86,189	+				-0.2
86,189	+				+0.2
86,189	+				+0.2
86,189	+				-0.1
86,189	+				-1.4
86,189	+				+0.1
86,189	+				-0.6
86,189	+				-1.9
86,189	+				+1.1
86,189	+				-0.1
86,189	+				-0.9
86,189	+				-0.5
86,189	+				-0.1
86,189	+				-0.5
86,189	+				+0.1
86,189	+				-0.3
86,189	+				+0.1
86,189	+				+0.3
86,189	+				+2.1
86,189	+				-0.1
86,189	+				-0.4
86,189	+				+0.1
86,189	+				-0.1
86,189	+				+0.3
86,189	+				-0.6
86,189	+				+0.5
86,189	+				-0.5
86,189	+				-1.9
86,189	+				-0.1
86,189	+				+0.9
86,189	+				+1.0
86,189	+				-0.3
86,190	-				+0.9
86,190	-				+0.3
86,190	-				+0.3
86,190	-				+0.2
86,190	-				-1.4
86,190	-				-0.7
86,190	-				-0.4
86,190	-				-0.9
86,190	-				+0.5
86,190	-				-0.4
86,190	-				-1.7
86,190	-				-0.0
86,190	-				-0.1
86,190	-				-1.5
86,190	-				+1.5
86,190	-				-0.0
86,190	-				-1.6
86,190	-				-0.2
86,190	-				-0.7
86,190	-				+0.5
86,190	-				-0.3
86,190	-				+0.9
86,190	-				-0.1
86,190	-				+0.1
86,190	-				+0.5
86,190	-				+0.7
86,190	-				-0.3
86,190	-				+0.5
86,190	-				-1.7
86,190	-				-0.7
86,190	-				-0.1
86,190	-				-1.2
86,190	-				-1.5
86,190	-				-0.3
86,190	-				+0.3
86,190	-				-1.6
86,190	-				+0.2
86,190	-				-0.3
86,190	-				+0.2
86,190	-				+2.3
86,190	-				-0.9
86,190	-				+0.9
86,190	-				+0.9
86,190	-				-0.6
86,190	-				-0.2
86,190	-				-0.9
86,190	-				-0.2
86,190	-				-0.6
86,190	-				-0.2
86,190	-				-0.9
86,190	-				+2.9
86,190	-				+0.1
86,190	-				+0.2
86,190	-				+1.3
86,190	-				-1.6
86,190	-				-0.0
86,190	-				+0.4
86,190	-				-0.2
86,190	-				+0.5
86,190	-				+0.4
86,190	-				+0.3
86,190	-				-0.4
86,190	-				-0.7
86,190	-				-0.7
86,190	-				-1.9
86,190	-				-0.1
86,190	-				-0.0
86,192	-				+0.3
86,192	-				+0.5
86,218	+				-1.7
86,219	-				+0.1
86,219	-				-0.9
86,250	+		GFF6296	0.16	-1.6
86,250	+		GFF6296	0.16	+0.3
86,592	+				+1.1
86,592	+				+0.6
86,592	+				-0.1
86,592	+				-1.3
86,592	+				-0.1
86,592	+				-1.1
86,592	+				-0.6
86,592	+				-0.2
86,592	+				-0.4
86,593	-				-0.1
86,593	-				+0.3
86,593	-				+0.1
86,593	-				-0.8
86,593	-				-0.7
86,593	-				-0.9
86,593	-				-0.4
86,593	-				-0.7
86,742	+		GFF6297	0.33	+0.1
86,742	+		GFF6297	0.33	-0.8
86,742	+		GFF6297	0.33	-1.3
86,742	+		GFF6297	0.33	-0.1
86,742	+		GFF6297	0.33	-0.6
86,742	+		GFF6297	0.33	-0.6
86,742	+		GFF6297	0.33	+0.9
86,743	-		GFF6297	0.34	+0.4
86,743	-		GFF6297	0.34	-0.7
86,743	-		GFF6297	0.34	+1.3
86,743	-		GFF6297	0.34	+0.2
86,743	-		GFF6297	0.34	-0.4
86,743	-		GFF6297	0.34	+0.4
86,743	-		GFF6297	0.34	-0.2
86,743	-		GFF6297	0.34	+0.7
86,898	+		GFF6297	0.68	-0.8
86,898	+		GFF6297	0.68	+0.3
86,899	-		GFF6297	0.68	-0.9
86,899	-		GFF6297	0.68	+0.5
86,976	+		GFF6297	0.85	+0.3
87,008	+				+1.0
87,008	+				-0.8
87,008	+				+0.9
87,008	+				+1.3
87,008	+				+0.8
87,008	+				+0.9
87,008	+				-1.1
87,008	+				-0.4
87,008	+				-0.7
87,008	+				-1.1
87,008	+				-1.1
87,008	+				+0.2
87,008	+				+0.4
87,008	+				+1.6
87,009	-				+0.4
87,009	-				+0.4
87,009	-				-0.2
87,009	-				-0.2
87,009	-				+1.5
87,009	-				+1.9
87,009	-				-0.9
87,009	-				-1.3
87,009	-				+0.5
87,009	-				-0.8
87,009	-				+0.2
87,009	-				+0.6
87,009	-				-0.5
87,009	-				-0.0
87,009	-				-0.8
87,009	-				+0.3
87,009	-				+0.3
87,018	+				+0.1
87,018	+				-0.7
87,018	+				-0.2
87,018	+				+0.3
87,019	-				-0.5
87,019	-				+1.9
87,019	-				+0.7
87,019	-				-2.0
87,019	-				+0.7
87,060	+				-0.6
87,060	+				+1.1
87,060	+				-0.1
87,060	+				-0.4
87,060	+				-0.0
87,060	+				-0.2
87,060	+				-1.1
87,060	+				-3.5
87,060	+				-2.3
87,060	+				+0.1
87,061	-				-0.4
87,061	-				-0.0
87,061	-				+1.9
87,061	-				-0.2
87,061	-				+0.0
87,061	-				-0.3
87,061	-				-0.1