Strain Fitness in Variovorax sp. SCN45 around GFF6294

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
82,678	+				+0.3
82,678	+				-0.6
82,678	+				+1.0
82,678	+				+0.9
82,678	+				-1.1
82,679	-				+1.0
82,679	-				-0.1
82,679	-				+0.1
82,679	-				+0.7
82,679	-				-0.6
82,679	-				+0.2
82,705	+				-0.0
82,705	+				+1.3
82,705	+				-0.1
82,705	+				+0.3
82,705	+				-0.5
82,705	+				-0.7
82,705	+				-0.3
82,705	+				-0.5
82,705	+				+0.4
82,705	+				-1.3
82,705	+				+0.7
82,705	+				+0.0
82,705	+				+1.0
82,705	+				+0.0
82,705	+				-0.2
82,706	-				-0.1
82,706	-				-0.4
82,706	-				+0.9
82,706	-				+0.5
82,706	-				-0.6
82,706	-				+0.3
82,706	-				+0.9
82,706	-				-0.5
82,706	-				-1.2
82,706	-				-0.1
82,706	-				-0.5
82,706	-				+0.0
82,706	-				-0.1
82,706	-				+0.1
82,706	-				-1.6
82,706	-				-0.8
82,706	-				-0.5
82,832	+				+0.9
82,832	+				+1.4
82,832	+				+1.3
82,832	+				-0.5
82,832	+				-0.3
82,832	+				-1.3
82,832	+				-0.7
82,832	+				+0.3
82,832	+				+0.3
82,832	+				-1.6
82,833	-				+0.9
82,833	-				+0.3
82,833	-				+0.4
82,833	-				-0.1
82,833	-				-1.3
82,833	-				-0.7
82,833	-				-1.7
82,886	+		GFF6293	0.13	-0.9
82,886	+		GFF6293	0.13	-0.5
82,886	+		GFF6293	0.13	-0.6
82,887	-		GFF6293	0.13	+1.6
82,887	-		GFF6293	0.13	+0.8
82,887	-		GFF6293	0.13	+1.9
82,887	-		GFF6293	0.13	-0.5
82,931	+		GFF6293	0.20	+0.3
82,931	+		GFF6293	0.20	-0.1
82,931	+		GFF6293	0.20	-0.5
82,932	-		GFF6293	0.20	+1.9
82,932	-		GFF6293	0.20	+1.3
83,105	+		GFF6293	0.46	-1.1
83,105	+		GFF6293	0.46	-0.2
83,105	+		GFF6293	0.46	+0.1
83,106	-		GFF6293	0.47	+0.1
83,138	+		GFF6293	0.52	+1.9
83,138	+		GFF6293	0.52	-0.3
83,138	+		GFF6293	0.52	-0.5
83,139	-		GFF6293	0.52	+0.5
83,139	-		GFF6293	0.52	-1.6
83,139	-		GFF6293	0.52	+0.9
83,141	+		GFF6293	0.52	+2.6
83,141	+		GFF6293	0.52	+0.3
83,141	+		GFF6293	0.52	+0.9
83,142	-		GFF6293	0.52	+0.6
83,142	-		GFF6293	0.52	-0.7
83,142	-		GFF6293	0.52	+0.3
83,142	-		GFF6293	0.52	-1.5
83,142	-		GFF6293	0.52	-0.7
83,273	+		GFF6293	0.72	-0.9
83,273	+		GFF6293	0.72	-0.5
83,273	+		GFF6293	0.72	-1.1
83,274	-		GFF6293	0.73	+1.5
83,345	+		GFF6293	0.83	-0.7
83,345	+		GFF6293	0.83	+0.5
83,345	+		GFF6293	0.83	+0.3
83,346	-		GFF6293	0.84	-0.1
83,472	+				-0.3
83,472	+				-0.3
83,473	-				-0.3
83,567	+				-0.7
83,567	+				+0.1
83,567	+				-0.5
83,567	+				-1.7
83,567	+				-0.3
83,567	+				-1.1
83,568	-				+0.1
83,568	-				-1.1
83,568	-				+0.0
83,568	-				-0.2
83,568	-				-0.2
83,568	-				-0.9
83,568	-				-0.1
83,568	-				+0.2
83,568	-				+0.1
83,568	-				-1.6
83,568	-				+0.0
83,568	-				-1.8
83,574	+				+0.3
83,574	+				-0.6
83,574	+				-0.2
83,574	+				+0.5
83,574	+				-0.1
83,574	+				+1.6
83,574	+				-0.3
83,574	+				-0.7
83,575	-				+0.1
83,575	-				-0.4
83,575	-				+0.1
83,575	-				-1.4
83,575	-				-0.1
83,575	-				+0.3
83,575	-				-0.2
83,575	-				-0.5
83,575	-				-0.8
83,575	-				+0.5
83,710	+		GFF6294	0.14	-0.0
83,830	+		GFF6294	0.30	+0.6
83,830	+		GFF6294	0.30	-1.3
83,830	+		GFF6294	0.30	-0.1
83,830	+		GFF6294	0.30	-0.5
83,830	+		GFF6294	0.30	-1.6
83,830	+		GFF6294	0.30	-1.0
83,830	+		GFF6294	0.30	-0.9
83,830	+		GFF6294	0.30	-2.3
83,831	-		GFF6294	0.30	-0.1
83,831	-		GFF6294	0.30	-0.9
83,831	-		GFF6294	0.30	+1.9
83,831	-		GFF6294	0.30	-1.4
83,831	-		GFF6294	0.30	-0.7
83,831	-		GFF6294	0.30	-0.7
83,831	-		GFF6294	0.30	-1.3
83,831	-		GFF6294	0.30	-1.3
83,831	-		GFF6294	0.30	+0.7
83,831	-		GFF6294	0.30	+0.1