Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF626 and GFF627 overlap by 4 nucleotides GFF627 and GFF628 are separated by 107 nucleotides GFF628 and GFF629 overlap by 4 nucleotides
GFF626 - CzcABC family efflux RND transporter, transmembrane protein, at 673,454 to 676,582
GFF626
GFF627 - Secretion protein HlyD, at 676,579 to 677,751
GFF627
GFF628 - hypothetical protein, at 677,859 to 678,527
GFF628
GFF629 - hypothetical protein, at 678,524 to 679,903
GFF629
Position (kb) 676
677
678 Strain fitness (log2 ratio) -2
-1
0
1 at 675.625 kb on - strand, within GFF626 at 676.164 kb on + strand, within GFF626 at 676.165 kb on - strand, within GFF626 at 676.165 kb on - strand, within GFF626 at 676.165 kb on - strand, within GFF626 at 676.165 kb on - strand, within GFF626 at 676.170 kb on + strand, within GFF626 at 676.170 kb on + strand, within GFF626 at 676.171 kb on - strand, within GFF626 at 676.272 kb on + strand at 676.677 kb on - strand at 676.677 kb on - strand at 676.754 kb on + strand, within GFF627 at 676.761 kb on - strand, within GFF627 at 677.502 kb on - strand, within GFF627 at 677.787 kb on + strand at 677.834 kb on + strand at 677.834 kb on + strand at 677.835 kb on - strand at 677.835 kb on - strand at 677.835 kb on - strand at 677.835 kb on - strand at 678.151 kb on - strand, within GFF628 at 678.235 kb on + strand, within GFF628 at 678.435 kb on + strand, within GFF628 at 678.435 kb on + strand, within GFF628 at 678.435 kb on + strand, within GFF628 at 678.435 kb on + strand, within GFF628 at 678.436 kb on - strand, within GFF628 at 678.436 kb on - strand, within GFF628 at 678.436 kb on - strand, within GFF628 at 678.436 kb on - strand, within GFF628 at 678.436 kb on - strand, within GFF628 at 678.504 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL remove 675,625 - GFF626 0.69 -0.5 676,164 + GFF626 0.87 -1.4 676,165 - GFF626 0.87 -0.1 676,165 - GFF626 0.87 -0.7 676,165 - GFF626 0.87 -0.5 676,165 - GFF626 0.87 -2.0 676,170 + GFF626 0.87 -1.4 676,170 + GFF626 0.87 -0.8 676,171 - GFF626 0.87 -0.4 676,272 + -0.4 676,677 - +0.6 676,677 - +0.3 676,754 + GFF627 0.15 -0.2 676,761 - GFF627 0.16 -1.2 677,502 - GFF627 0.79 -1.4 677,787 + -0.0 677,834 + -0.3 677,834 + -0.2 677,835 - -0.7 677,835 - +0.8 677,835 - +0.0 677,835 - +0.6 678,151 - GFF628 0.44 -0.7 678,235 + GFF628 0.56 +0.3 678,435 + GFF628 0.86 -0.7 678,435 + GFF628 0.86 -0.4 678,435 + GFF628 0.86 -0.5 678,435 + GFF628 0.86 -0.5 678,436 - GFF628 0.86 -0.4 678,436 - GFF628 0.86 +1.5 678,436 - GFF628 0.86 -0.1 678,436 - GFF628 0.86 +0.1 678,436 - GFF628 0.86 -0.5 678,504 + +0.6
Or see this region's nucleotide sequence