Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6214 and GFF6215 are separated by 56 nucleotides GFF6215 and GFF6216 are separated by 59 nucleotides GFF6216 and GFF6217 are separated by 380 nucleotides
GFF6214 - Amidinotransferase family protein, at 121,126 to 122,085
GFF6214
GFF6215 - no description, at 122,142 to 122,873
GFF6215
GFF6216 - hypothetical protein, at 122,933 to 124,864
GFF6216
GFF6217 - hypothetical protein, at 125,245 to 126,237
GFF6217
Position (kb) 122
123
124
125 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 122.263 kb on + strand, within GFF6215 at 122.536 kb on - strand, within GFF6215 at 122.536 kb on - strand, within GFF6215 at 122.536 kb on - strand, within GFF6215 at 122.551 kb on + strand, within GFF6215 at 122.551 kb on + strand, within GFF6215 at 122.552 kb on - strand, within GFF6215 at 122.552 kb on - strand, within GFF6215 at 122.552 kb on - strand, within GFF6215 at 122.552 kb on - strand, within GFF6215 at 122.552 kb on - strand, within GFF6215 at 122.552 kb on - strand, within GFF6215 at 122.552 kb on - strand, within GFF6215 at 122.552 kb on - strand, within GFF6215 at 122.722 kb on + strand, within GFF6215 at 122.722 kb on + strand, within GFF6215 at 122.722 kb on + strand, within GFF6215 at 122.723 kb on - strand, within GFF6215 at 122.723 kb on - strand, within GFF6215 at 122.723 kb on - strand, within GFF6215 at 122.723 kb on - strand, within GFF6215 at 122.731 kb on + strand, within GFF6215 at 122.788 kb on + strand, within GFF6215 at 122.788 kb on + strand, within GFF6215 at 122.788 kb on + strand, within GFF6215 at 122.788 kb on + strand, within GFF6215 at 122.788 kb on + strand, within GFF6215 at 122.788 kb on + strand, within GFF6215 at 122.789 kb on - strand, within GFF6215 at 122.789 kb on - strand, within GFF6215 at 122.789 kb on - strand, within GFF6215 at 122.789 kb on - strand, within GFF6215 at 122.789 kb on - strand, within GFF6215 at 122.789 kb on - strand, within GFF6215 at 122.789 kb on - strand, within GFF6215 at 122.789 kb on - strand, within GFF6215 at 122.789 kb on - strand, within GFF6215 at 122.790 kb on + strand, within GFF6215 at 122.791 kb on - strand, within GFF6215 at 122.791 kb on - strand, within GFF6215 at 122.791 kb on - strand, within GFF6215 at 122.791 kb on - strand, within GFF6215 at 122.791 kb on - strand, within GFF6215 at 122.830 kb on + strand at 122.830 kb on + strand at 122.831 kb on - strand at 122.838 kb on + strand at 122.839 kb on - strand at 122.839 kb on - strand at 122.864 kb on + strand at 122.865 kb on - strand at 122.865 kb on - strand at 122.880 kb on + strand at 122.881 kb on - strand at 122.881 kb on - strand at 122.881 kb on - strand at 122.881 kb on - strand at 122.881 kb on - strand at 122.881 kb on - strand at 122.881 kb on - strand at 122.881 kb on - strand at 122.881 kb on - strand at 122.954 kb on + strand at 122.954 kb on + strand at 122.954 kb on + strand at 122.954 kb on + strand at 122.954 kb on + strand at 122.962 kb on - strand at 123.101 kb on + strand at 123.122 kb on - strand at 123.122 kb on - strand at 123.125 kb on + strand at 123.126 kb on - strand at 123.126 kb on - strand at 123.126 kb on - strand at 123.126 kb on - strand at 123.126 kb on - strand at 123.145 kb on + strand, within GFF6216 at 123.146 kb on - strand, within GFF6216 at 123.146 kb on - strand, within GFF6216 at 123.146 kb on - strand, within GFF6216 at 123.164 kb on + strand, within GFF6216 at 123.164 kb on + strand, within GFF6216 at 123.165 kb on - strand, within GFF6216 at 123.165 kb on - strand, within GFF6216 at 123.175 kb on + strand, within GFF6216 at 123.176 kb on - strand, within GFF6216 at 123.176 kb on - strand, within GFF6216 at 123.240 kb on + strand, within GFF6216 at 123.240 kb on + strand, within GFF6216 at 123.240 kb on + strand, within GFF6216 at 123.240 kb on + strand, within GFF6216 at 123.241 kb on - strand, within GFF6216 at 123.272 kb on + strand, within GFF6216 at 123.273 kb on - strand, within GFF6216 at 123.281 kb on + strand, within GFF6216 at 123.401 kb on + strand, within GFF6216 at 123.402 kb on - strand, within GFF6216 at 123.509 kb on - strand, within GFF6216 at 123.535 kb on + strand, within GFF6216 at 123.535 kb on + strand, within GFF6216 at 123.536 kb on - strand, within GFF6216 at 123.536 kb on - strand, within GFF6216 at 123.536 kb on - strand, within GFF6216 at 123.536 kb on - strand, within GFF6216 at 123.536 kb on - strand, within GFF6216 at 123.583 kb on - strand, within GFF6216 at 123.583 kb on - strand, within GFF6216 at 123.584 kb on + strand, within GFF6216 at 123.584 kb on + strand, within GFF6216 at 123.585 kb on - strand, within GFF6216 at 123.585 kb on - strand, within GFF6216 at 123.585 kb on - strand, within GFF6216 at 123.618 kb on + strand, within GFF6216 at 123.635 kb on + strand, within GFF6216 at 123.635 kb on + strand, within GFF6216 at 123.636 kb on - strand, within GFF6216 at 123.671 kb on + strand, within GFF6216 at 123.671 kb on + strand, within GFF6216 at 123.671 kb on + strand, within GFF6216 at 123.671 kb on + strand, within GFF6216 at 123.672 kb on - strand, within GFF6216 at 123.672 kb on - strand, within GFF6216 at 123.749 kb on + strand, within GFF6216 at 123.758 kb on + strand, within GFF6216 at 123.785 kb on + strand, within GFF6216 at 123.785 kb on + strand, within GFF6216 at 123.785 kb on + strand, within GFF6216 at 123.786 kb on - strand, within GFF6216 at 123.786 kb on - strand, within GFF6216 at 123.786 kb on - strand, within GFF6216 at 123.786 kb on - strand, within GFF6216 at 123.818 kb on - strand, within GFF6216 at 123.866 kb on + strand, within GFF6216 at 123.867 kb on - strand, within GFF6216 at 123.867 kb on - strand, within GFF6216 at 123.939 kb on - strand, within GFF6216 at 123.993 kb on - strand, within GFF6216 at 124.053 kb on + strand, within GFF6216 at 124.054 kb on - strand, within GFF6216 at 124.054 kb on - strand, within GFF6216 at 124.083 kb on + strand, within GFF6216 at 124.083 kb on + strand, within GFF6216 at 124.084 kb on - strand, within GFF6216 at 124.222 kb on - strand, within GFF6216 at 124.222 kb on - strand, within GFF6216 at 124.477 kb on - strand, within GFF6216 at 124.583 kb on + strand, within GFF6216 at 124.706 kb on + strand at 124.706 kb on + strand at 124.706 kb on + strand at 124.706 kb on + strand at 124.706 kb on + strand at 124.707 kb on - strand at 124.707 kb on - strand at 124.707 kb on - strand at 124.707 kb on - strand at 124.711 kb on - strand at 124.800 kb on + strand at 124.801 kb on - strand at 124.801 kb on - strand at 124.801 kb on - strand at 124.801 kb on - strand at 124.825 kb on + strand at 124.826 kb on - strand at 124.862 kb on + strand at 124.862 kb on + strand at 124.862 kb on + strand at 124.862 kb on + strand at 124.862 kb on + strand at 124.862 kb on + strand at 124.862 kb on + strand at 124.862 kb on + strand at 124.862 kb on + strand at 124.863 kb on - strand at 124.863 kb on - strand at 124.863 kb on - strand at 124.863 kb on - strand at 124.863 kb on - strand at 124.863 kb on - strand at 124.863 kb on - strand at 124.863 kb on - strand at 124.875 kb on - strand at 124.907 kb on + strand at 124.915 kb on + strand at 124.915 kb on + strand at 124.916 kb on - strand at 124.970 kb on + strand at 124.970 kb on + strand at 124.970 kb on + strand at 124.970 kb on + strand at 124.971 kb on - strand at 124.971 kb on - strand at 124.971 kb on - strand at 124.971 kb on - strand at 124.971 kb on - strand at 124.971 kb on - strand at 124.971 kb on - strand at 124.971 kb on - strand at 124.984 kb on + strand at 124.985 kb on - strand at 124.985 kb on - strand at 124.985 kb on - strand at 124.985 kb on - strand at 125.023 kb on + strand at 125.024 kb on - strand at 125.024 kb on - strand at 125.052 kb on + strand at 125.053 kb on - strand at 125.053 kb on - strand at 125.053 kb on - strand at 125.053 kb on - strand at 125.074 kb on + strand at 125.074 kb on + strand at 125.075 kb on - strand at 125.075 kb on - strand at 125.112 kb on - strand at 125.112 kb on - strand at 125.112 kb on - strand at 125.120 kb on + strand at 125.120 kb on + strand at 125.120 kb on + strand at 125.120 kb on + strand at 125.120 kb on + strand at 125.121 kb on - strand at 125.121 kb on - strand at 125.121 kb on - strand at 125.121 kb on - strand at 125.121 kb on - strand at 125.121 kb on - strand at 125.140 kb on + strand at 125.140 kb on + strand at 125.140 kb on + strand at 125.140 kb on + strand at 125.163 kb on + strand at 125.163 kb on + strand at 125.163 kb on + strand at 125.163 kb on + strand at 125.164 kb on - strand at 125.164 kb on - strand at 125.187 kb on + strand at 125.187 kb on + strand at 125.187 kb on + strand at 125.187 kb on + strand at 125.187 kb on + strand at 125.187 kb on + strand at 125.188 kb on - strand at 125.188 kb on - strand at 125.188 kb on - strand at 125.188 kb on - strand at 125.188 kb on - strand at 125.188 kb on - strand at 125.188 kb on - strand at 125.188 kb on - strand at 125.265 kb on + strand at 125.265 kb on + strand at 125.265 kb on + strand at 125.265 kb on + strand at 125.424 kb on + strand, within GFF6217 at 125.424 kb on + strand, within GFF6217 at 125.425 kb on - strand, within GFF6217 at 125.673 kb on + strand, within GFF6217 at 125.673 kb on + strand, within GFF6217 at 125.673 kb on + strand, within GFF6217 at 125.673 kb on + strand, within GFF6217 at 125.674 kb on - strand, within GFF6217 at 125.694 kb on + strand, within GFF6217 at 125.695 kb on - strand, within GFF6217 at 125.695 kb on - strand, within GFF6217 at 125.850 kb on - strand, within GFF6217
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL remove 122,263 + GFF6215 0.17 -0.1 122,536 - GFF6215 0.54 +0.2 122,536 - GFF6215 0.54 +0.4 122,536 - GFF6215 0.54 -0.0 122,551 + GFF6215 0.56 -0.6 122,551 + GFF6215 0.56 -0.1 122,552 - GFF6215 0.56 -1.0 122,552 - GFF6215 0.56 -0.0 122,552 - GFF6215 0.56 -0.7 122,552 - GFF6215 0.56 +0.4 122,552 - GFF6215 0.56 +1.0 122,552 - GFF6215 0.56 -0.7 122,552 - GFF6215 0.56 -0.6 122,552 - GFF6215 0.56 +2.4 122,722 + GFF6215 0.79 +1.6 122,722 + GFF6215 0.79 -0.5 122,722 + GFF6215 0.79 +0.1 122,723 - GFF6215 0.79 -0.6 122,723 - GFF6215 0.79 +0.7 122,723 - GFF6215 0.79 +0.9 122,723 - GFF6215 0.79 -0.1 122,731 + GFF6215 0.80 -1.2 122,788 + GFF6215 0.88 -1.1 122,788 + GFF6215 0.88 -1.6 122,788 + GFF6215 0.88 +0.5 122,788 + GFF6215 0.88 +0.7 122,788 + GFF6215 0.88 -1.0 122,788 + GFF6215 0.88 -1.3 122,789 - GFF6215 0.88 -0.8 122,789 - GFF6215 0.88 -0.5 122,789 - GFF6215 0.88 -0.1 122,789 - GFF6215 0.88 +0.4 122,789 - GFF6215 0.88 +0.6 122,789 - GFF6215 0.88 +2.4 122,789 - GFF6215 0.88 -0.5 122,789 - GFF6215 0.88 -0.7 122,789 - GFF6215 0.88 +1.0 122,790 + GFF6215 0.89 -1.0 122,791 - GFF6215 0.89 +0.6 122,791 - GFF6215 0.89 -0.8 122,791 - GFF6215 0.89 -0.2 122,791 - GFF6215 0.89 -0.4 122,791 - GFF6215 0.89 +0.1 122,830 + -0.5 122,830 + -0.7 122,831 - -0.5 122,838 + +0.4 122,839 - +0.4 122,839 - -0.1 122,864 + +2.0 122,865 - +1.6 122,865 - -1.4 122,880 + -0.6 122,881 - -0.1 122,881 - +1.4 122,881 - +0.0 122,881 - +0.8 122,881 - -0.3 122,881 - +2.0 122,881 - -0.7 122,881 - -1.2 122,881 - -0.4 122,954 + -0.6 122,954 + +0.4 122,954 + +1.6 122,954 + -1.7 122,954 + +1.4 122,962 - +0.0 123,101 + +0.6 123,122 - -0.2 123,122 - -0.7 123,125 + +0.6 123,126 - -0.2 123,126 - -1.0 123,126 - -1.0 123,126 - +0.2 123,126 - -0.5 123,145 + GFF6216 0.11 -0.0 123,146 - GFF6216 0.11 -0.8 123,146 - GFF6216 0.11 -0.8 123,146 - GFF6216 0.11 +1.1 123,164 + GFF6216 0.12 +1.3 123,164 + GFF6216 0.12 +0.8 123,165 - GFF6216 0.12 +0.1 123,165 - GFF6216 0.12 -1.3 123,175 + GFF6216 0.13 -0.0 123,176 - GFF6216 0.13 +0.3 123,176 - GFF6216 0.13 +0.3 123,240 + GFF6216 0.16 +0.4 123,240 + GFF6216 0.16 -1.4 123,240 + GFF6216 0.16 +0.2 123,240 + GFF6216 0.16 -0.3 123,241 - GFF6216 0.16 -0.0 123,272 + GFF6216 0.18 +0.6 123,273 - GFF6216 0.18 -0.3 123,281 + GFF6216 0.18 -1.4 123,401 + GFF6216 0.24 -0.5 123,402 - GFF6216 0.24 -1.0 123,509 - GFF6216 0.30 -0.1 123,535 + GFF6216 0.31 +0.1 123,535 + GFF6216 0.31 -0.4 123,536 - GFF6216 0.31 -0.1 123,536 - GFF6216 0.31 -1.4 123,536 - GFF6216 0.31 +0.1 123,536 - GFF6216 0.31 -0.4 123,536 - GFF6216 0.31 -0.5 123,583 - GFF6216 0.34 -0.5 123,583 - GFF6216 0.34 -1.2 123,584 + GFF6216 0.34 -1.0 123,584 + GFF6216 0.34 +0.3 123,585 - GFF6216 0.34 -2.0 123,585 - GFF6216 0.34 -0.3 123,585 - GFF6216 0.34 -1.7 123,618 + GFF6216 0.35 +0.0 123,635 + GFF6216 0.36 +0.2 123,635 + GFF6216 0.36 -1.2 123,636 - GFF6216 0.36 -0.5 123,671 + GFF6216 0.38 -0.2 123,671 + GFF6216 0.38 +0.4 123,671 + GFF6216 0.38 -0.4 123,671 + GFF6216 0.38 -0.2 123,672 - GFF6216 0.38 +1.0 123,672 - GFF6216 0.38 -0.4 123,749 + GFF6216 0.42 -0.7 123,758 + GFF6216 0.43 +0.3 123,785 + GFF6216 0.44 +0.6 123,785 + GFF6216 0.44 -0.8 123,785 + GFF6216 0.44 +0.5 123,786 - GFF6216 0.44 -1.0 123,786 - GFF6216 0.44 -0.8 123,786 - GFF6216 0.44 +1.7 123,786 - GFF6216 0.44 -0.5 123,818 - GFF6216 0.46 -0.4 123,866 + GFF6216 0.48 -0.2 123,867 - GFF6216 0.48 -0.2 123,867 - GFF6216 0.48 -0.7 123,939 - GFF6216 0.52 -0.3 123,993 - GFF6216 0.55 -2.4 124,053 + GFF6216 0.58 +0.6 124,054 - GFF6216 0.58 -0.3 124,054 - GFF6216 0.58 -0.1 124,083 + GFF6216 0.60 -0.1 124,083 + GFF6216 0.60 -0.8 124,084 - GFF6216 0.60 -0.1 124,222 - GFF6216 0.67 +0.3 124,222 - GFF6216 0.67 +0.2 124,477 - GFF6216 0.80 +1.6 124,583 + GFF6216 0.85 +0.0 124,706 + +0.0 124,706 + -0.5 124,706 + -1.0 124,706 + +0.1 124,706 + -1.7 124,707 - -1.1 124,707 - +0.5 124,707 - -0.3 124,707 - -0.2 124,711 - -0.2 124,800 + -0.1 124,801 - -2.0 124,801 - -1.0 124,801 - +0.5 124,801 - -0.3 124,825 + +0.2 124,826 - -0.9 124,862 + +0.4 124,862 + +0.9 124,862 + -0.6 124,862 + +0.0 124,862 + -0.4 124,862 + -1.0 124,862 + +0.0 124,862 + -0.6 124,862 + -0.2 124,863 - +1.3 124,863 - -2.6 124,863 - +0.0 124,863 - -0.5 124,863 - -0.4 124,863 - -0.8 124,863 - -0.0 124,863 - -0.3 124,875 - +0.2 124,907 + +0.5 124,915 + -1.8 124,915 + +2.2 124,916 - -0.7 124,970 + -0.8 124,970 + +0.4 124,970 + -0.1 124,970 + -0.9 124,971 - +0.1 124,971 - +0.3 124,971 - -2.9 124,971 - -0.4 124,971 - -1.4 124,971 - -1.0 124,971 - +0.3 124,971 - +0.2 124,984 + -1.1 124,985 - -0.1 124,985 - -0.4 124,985 - +0.6 124,985 - -0.3 125,023 + +0.5 125,024 - +0.4 125,024 - +0.8 125,052 + +0.9 125,053 - -0.2 125,053 - -1.1 125,053 - -0.6 125,053 - +0.8 125,074 + -0.7 125,074 + -0.2 125,075 - -0.7 125,075 - -0.5 125,112 - +0.0 125,112 - -1.5 125,112 - -0.7 125,120 + -0.7 125,120 + -0.1 125,120 + -0.7 125,120 + +2.2 125,120 + -0.4 125,121 - -2.1 125,121 - +1.2 125,121 - +1.4 125,121 - -0.2 125,121 - -0.4 125,121 - -0.4 125,140 + +0.3 125,140 + +1.1 125,140 + -0.7 125,140 + -0.3 125,163 + -1.0 125,163 + +0.6 125,163 + +1.0 125,163 + -0.2 125,164 - +1.6 125,164 - -0.7 125,187 + +0.6 125,187 + -0.4 125,187 + -0.5 125,187 + -0.5 125,187 + -0.8 125,187 + +0.6 125,188 - -2.6 125,188 - +0.1 125,188 - +0.4 125,188 - -0.8 125,188 - -0.4 125,188 - -0.1 125,188 - -1.2 125,188 - +0.6 125,265 + +0.0 125,265 + +1.5 125,265 + -0.6 125,265 + +0.3 125,424 + GFF6217 0.18 +0.5 125,424 + GFF6217 0.18 -0.0 125,425 - GFF6217 0.18 -0.6 125,673 + GFF6217 0.43 +1.0 125,673 + GFF6217 0.43 -1.7 125,673 + GFF6217 0.43 -0.2 125,673 + GFF6217 0.43 +0.1 125,674 - GFF6217 0.43 -1.4 125,694 + GFF6217 0.45 +1.6 125,695 - GFF6217 0.45 -0.4 125,695 - GFF6217 0.45 +0.1 125,850 - GFF6217 0.61 -1.0
Or see this region's nucleotide sequence