Strain Fitness in Variovorax sp. SCN45 around GFF6042

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
101,110	+				-1.5
101,110	+				+0.7
101,110	+				-0.1
101,111	-				+0.7
101,135	+				-1.2
101,135	+				-1.1
101,135	+				+1.3
101,135	+				-0.8
101,136	-				-1.0
101,136	-				+0.5
101,136	-				-0.7
101,136	-				-2.3
101,136	-				-0.7
101,136	-				-0.5
101,136	-				-0.0
101,515	+				-0.2
101,515	+				-0.4
101,515	+				+0.6
101,515	+				-0.4
101,515	+				-0.4
101,515	+				-1.6
101,515	+				-0.8
101,516	-				-0.1
101,516	-				+1.3
101,516	-				-2.4
101,516	-				+0.7
101,516	-				-0.3
101,516	-				+0.0
101,516	-				-0.7
101,516	-				+0.2
101,516	-				+0.9
101,595	+		GFF6040	0.38	-0.3
101,596	-		GFF6040	0.39	+1.3
101,646	+		GFF6040	0.67	+0.7
101,679	+		GFF6040	0.86	+0.2
101,679	+		GFF6040	0.86	+0.9
101,679	+		GFF6040	0.86	-0.3
101,679	+		GFF6040	0.86	-0.5
101,680	-		GFF6040	0.87	+0.2
101,700	+				+0.7
101,700	+				+0.2
101,700	+				-0.5
101,701	-				-0.3
101,701	-				-2.9
101,701	-				-1.4
101,863	+				-0.2
101,863	+				-1.4
101,863	+				+0.2
101,863	+				-0.7
101,863	+				-0.1
101,863	+				-0.4
101,863	+				+0.4
101,863	+				-2.4
101,863	+				-1.8
101,863	+				-1.1
101,863	+				-2.3
101,863	+				-1.2
101,864	-				+0.3
101,864	-				-0.6
101,864	-				+0.3
101,864	-				-0.5
101,864	-				+0.3
101,866	+				-0.1
101,866	+				+1.0
101,866	+				-1.0
101,866	+				+0.4
101,866	+				-1.1
101,866	+				+0.5
101,866	+				+0.7
101,866	+				-0.0
101,867	-				-1.4
101,867	-				-0.3
101,867	-				-0.6
102,224	-		GFF6042	0.30	-2.4
102,346	+		GFF6042	0.40	-3.5
102,371	-		GFF6042	0.42	-1.1
102,505	+		GFF6042	0.53	-0.8
102,506	-		GFF6042	0.53	-1.8
102,506	-		GFF6042	0.53	+1.7
102,640	+		GFF6042	0.64	-0.8
102,640	+		GFF6042	0.64	-1.3
102,649	+		GFF6042	0.65	-0.6
102,650	-		GFF6042	0.65	+1.0
102,650	-		GFF6042	0.65	-0.6
102,650	-		GFF6042	0.65	-2.9
102,692	-		GFF6042	0.68	-0.6
102,730	+		GFF6042	0.71	-0.6
102,730	+		GFF6042	0.71	-2.0
102,988	+				-2.3
102,988	+				-0.5
102,988	+				+0.7
102,988	+				-0.3
102,989	-				-1.6
102,989	-				-1.3
103,089	+				-2.0
103,090	-				+0.4
103,090	-				-1.5
103,090	-				-1.2
103,090	-				+0.1
103,150	+				-0.2
103,151	-				-0.6
103,151	-				-0.6
103,151	-				-0.3
103,164	+				-1.5
103,164	+				+1.2
103,164	+				-1.1
103,165	-				-0.1
103,165	-				+0.3
103,165	-				-1.1
103,189	-				+0.1
103,194	+				-2.7
103,194	+				+0.8
103,194	+				-1.0
103,194	+				-0.6
103,194	+				-0.0
103,194	+				+2.2
103,194	+				-0.2
103,194	+				-0.1
103,195	-				-0.6
103,195	-				+1.7
103,195	-				+0.1
103,195	-				-0.8
103,195	-				-0.2
103,195	-				-0.7
103,213	+				-0.6
103,213	+				+0.0
103,214	-				-0.6
103,214	-				+0.5
103,214	-				-0.8
103,214	-				-0.0
103,279	+				+0.7
103,441	+		GFF6043	0.18	+1.0
103,442	-		GFF6043	0.18	+0.2
103,569	-		GFF6043	0.28	-0.2
103,741	+		GFF6043	0.42	+0.2
103,741	+		GFF6043	0.42	-0.8
103,742	-		GFF6043	0.42	-0.7
103,742	-		GFF6043	0.42	+0.1
103,757	+		GFF6043	0.43	+0.6
103,757	+		GFF6043	0.43	+0.5
103,757	+		GFF6043	0.43	-1.8
103,757	+		GFF6043	0.43	-0.5
103,757	+		GFF6043	0.43	+0.0
103,757	+		GFF6043	0.43	-0.3
103,758	-		GFF6043	0.43	+0.3
103,758	-		GFF6043	0.43	-0.0
103,758	-		GFF6043	0.43	+0.1
103,758	-		GFF6043	0.43	-0.7
103,758	-		GFF6043	0.43	+0.1