Strain Fitness in Variovorax sp. SCN45 around GFF5925

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
140,172	+				-0.1
140,172	+				-0.4
140,173	-				+0.2
140,173	-				+0.8
140,257	-		GFF5925	0.10	+0.4
140,257	-		GFF5925	0.10	+1.0
140,257	-		GFF5925	0.10	+0.1
140,319	+		GFF5925	0.17	-1.2
140,319	+		GFF5925	0.17	+0.6
140,320	-		GFF5925	0.18	-0.2
140,343	+		GFF5925	0.20	-0.3
140,343	+		GFF5925	0.20	+1.5
140,343	+		GFF5925	0.20	+1.3
140,344	-		GFF5925	0.20	+0.4
140,344	-		GFF5925	0.20	-1.5
140,464	-		GFF5925	0.34	-1.2
140,547	+		GFF5925	0.43	+1.8
140,580	+		GFF5925	0.47	-0.7
140,580	+		GFF5925	0.47	-0.4
140,580	+		GFF5925	0.47	+1.6
140,799	+		GFF5925	0.72	-0.7
140,800	-		GFF5925	0.72	-1.3
140,800	-		GFF5925	0.72	-1.0
140,916	+		GFF5925	0.85	-0.4
140,917	-		GFF5925	0.85	+1.7
140,983	-				+0.1
141,294	-		GFF5926	0.20	+1.1
141,541	+		GFF5926	0.42	+0.6
141,542	-		GFF5926	0.42	+1.2
141,691	+		GFF5926	0.55	-0.7
141,691	+		GFF5926	0.55	-0.7
141,691	+		GFF5926	0.55	-0.5
141,691	+		GFF5926	0.55	-0.1
141,692	-		GFF5926	0.55	+0.1
141,890	-		GFF5926	0.73	-0.6
141,890	-		GFF5926	0.73	+0.3
141,971	-		GFF5926	0.80	-0.5