Strain Fitness in Variovorax sp. SCN45 around GFF5897

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
114,833	+		GFF5896	0.44	-1.3
114,833	+		GFF5896	0.44	-0.2
114,833	+		GFF5896	0.44	-2.1
114,833	+		GFF5896	0.44	-1.2
114,833	+		GFF5896	0.44	-0.5
114,833	+		GFF5896	0.44	-2.5
114,833	+		GFF5896	0.44	+0.3
114,836	+		GFF5896	0.44	-2.2
114,836	+		GFF5896	0.44	-1.5
114,836	+		GFF5896	0.44	-2.8
114,836	+		GFF5896	0.44	-1.6
114,836	+		GFF5896	0.44	-2.6
114,836	+		GFF5896	0.44	-2.1
114,836	+		GFF5896	0.44	-3.2
114,837	-		GFF5896	0.44	-1.3
114,837	-		GFF5896	0.44	-2.2
114,837	-		GFF5896	0.44	-0.7
114,837	-		GFF5896	0.44	-1.2
114,837	-		GFF5896	0.44	-1.5
114,837	-		GFF5896	0.44	-2.1
114,837	-		GFF5896	0.44	-1.6
114,842	+		GFF5896	0.45	-0.2
114,842	+		GFF5896	0.45	+0.5
114,843	-		GFF5896	0.45	-2.7
114,843	-		GFF5896	0.45	-1.9
114,986	+		GFF5896	0.54	-0.6
115,134	-		GFF5896	0.64	-1.8
115,145	+		GFF5896	0.65	-2.5
115,146	-		GFF5896	0.65	+0.8
115,146	-		GFF5896	0.65	-4.2
115,274	+		GFF5896	0.74	+0.8
115,749	+		GFF5897	0.29	-0.7
115,749	+		GFF5897	0.29	-0.2
115,749	+		GFF5897	0.29	+0.4
115,749	+		GFF5897	0.29	-1.5
115,749	+		GFF5897	0.29	-0.3
115,749	+		GFF5897	0.29	-0.5
115,749	+		GFF5897	0.29	-0.3
115,749	+		GFF5897	0.29	+0.8
115,750	-		GFF5897	0.29	+0.1
115,750	-		GFF5897	0.29	+0.5
115,750	-		GFF5897	0.29	-0.6
115,750	-		GFF5897	0.29	+0.4
115,811	+		GFF5897	0.69	-0.6
115,811	+		GFF5897	0.69	-0.8
115,811	+		GFF5897	0.69	+0.5
115,811	+		GFF5897	0.69	+0.6
115,811	+		GFF5897	0.69	-0.2
115,811	+		GFF5897	0.69	-0.3
115,811	+		GFF5897	0.69	-0.4
115,811	+		GFF5897	0.69	-1.5
115,811	+		GFF5897	0.69	-0.2
115,811	+		GFF5897	0.69	-0.5
115,811	+		GFF5897	0.69	-0.9
115,811	+		GFF5897	0.69	-1.5
115,811	+		GFF5897	0.69	+0.3
115,811	+		GFF5897	0.69	-1.4
115,811	+		GFF5897	0.69	-0.0
115,811	+		GFF5897	0.69	-0.1
115,811	+		GFF5897	0.69	+1.3
115,812	-		GFF5897	0.70	-1.5
115,812	-		GFF5897	0.70	-1.6
115,812	-		GFF5897	0.70	+0.3
115,812	-		GFF5897	0.70	-1.2
115,812	-		GFF5897	0.70	-0.7
115,812	-		GFF5897	0.70	-0.8
115,812	-		GFF5897	0.70	-0.3
115,812	-		GFF5897	0.70	-1.0
115,812	-		GFF5897	0.70	-1.1
115,812	-		GFF5897	0.70	-0.5
115,812	-		GFF5897	0.70	-0.3
115,812	-		GFF5897	0.70	-1.4
115,812	-		GFF5897	0.70	-1.0
115,812	-		GFF5897	0.70	+1.4
115,812	-		GFF5897	0.70	-0.3
115,812	-		GFF5897	0.70	+0.1
115,817	+		GFF5897	0.73	-0.2
115,817	+		GFF5897	0.73	-0.2
115,817	+		GFF5897	0.73	-0.9
115,818	-		GFF5897	0.74	-0.5
115,892	-				+0.8
115,965	+				-2.5
115,966	-				-0.7
116,191	+		GFF5898	0.28	-1.0
116,191	+		GFF5898	0.28	-0.2
116,191	+		GFF5898	0.28	-0.4
116,192	-		GFF5898	0.29	-0.6
116,212	+		GFF5898	0.32	+0.4
116,227	+		GFF5898	0.34	+1.2
116,227	+		GFF5898	0.34	-0.6
116,227	+		GFF5898	0.34	+0.3
116,227	+		GFF5898	0.34	-0.6
116,227	+		GFF5898	0.34	-0.1
116,227	+		GFF5898	0.34	-0.3
116,228	-		GFF5898	0.34	-0.3
116,228	-		GFF5898	0.34	-0.1
116,228	-		GFF5898	0.34	-0.9
116,228	-		GFF5898	0.34	+0.3
116,228	-		GFF5898	0.34	-0.2
116,228	-		GFF5898	0.34	+0.5
116,621	-				-0.1
116,713	+		GFF5899	0.11	+2.2
116,713	+		GFF5899	0.11	+0.4
116,713	+		GFF5899	0.11	+1.6
116,713	+		GFF5899	0.11	+0.3
116,713	+		GFF5899	0.11	-0.2
116,714	-		GFF5899	0.11	-0.7
116,714	-		GFF5899	0.11	-0.2
116,719	+		GFF5899	0.12	+0.2