Strain Fitness in Variovorax sp. SCN45 around GFF5892

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
111,864	+		GFF5892	0.62	+1.2
111,864	+		GFF5892	0.62	+1.8
111,879	+		GFF5892	0.65	-0.5
111,879	+		GFF5892	0.65	-1.2
111,880	-		GFF5892	0.65	+0.6
111,880	-		GFF5892	0.65	+2.5
111,880	-		GFF5892	0.65	+1.1
111,880	-		GFF5892	0.65	-2.5
111,880	-		GFF5892	0.65	-0.2
111,880	-		GFF5892	0.65	-0.2
111,880	-		GFF5892	0.65	+0.1
112,032	+		GFF5892	0.88	-0.2
112,032	+		GFF5892	0.88	+0.8
112,032	+		GFF5892	0.88	-0.2
112,032	+		GFF5892	0.88	+0.2
112,033	-		GFF5892	0.88	+1.3
112,217	+				-0.6
112,218	-				+2.2
112,727	+		GFF5893	0.56	-0.5
112,728	-		GFF5893	0.57	+1.0
112,728	-		GFF5893	0.57	-1.1
112,943	+		GFF5893	0.77	-1.2
112,943	+		GFF5893	0.77	-1.3
112,943	+		GFF5893	0.77	-1.3
112,944	-		GFF5893	0.77	-0.4
112,944	-		GFF5893	0.77	-0.2
112,944	-		GFF5893	0.77	+1.0
112,944	-		GFF5893	0.77	-2.1
112,944	-		GFF5893	0.77	-1.7