Strain Fitness in Variovorax sp. SCN45 around GFF5889

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
108,369	-				-1.5
108,369	-				-0.7
108,369	-				-1.0
108,369	-				+0.1
108,369	-				+1.3
108,369	-				-1.0
108,369	-				-1.5
108,369	-				-0.0
108,369	-				-0.6
108,496	-				-1.6
108,496	-				-0.2
108,496	-				+0.8
108,496	-				-0.3
108,496	-				-0.6
108,496	-				+0.8
108,496	-				-0.3
108,643	-				+0.5
108,643	-				+0.0
108,659	-				-0.2
108,659	-				-0.5
108,659	-				-1.7
108,659	-				+0.9
108,659	-				-0.4
108,797	-				-0.0
108,821	-				-0.7
108,994	+		GFF5889	0.17	+0.3
108,994	+		GFF5889	0.17	-1.5
108,994	+		GFF5889	0.17	+1.1
108,995	-		GFF5889	0.17	+0.0
108,995	-		GFF5889	0.17	-0.6
108,995	-		GFF5889	0.17	+0.1
109,025	-		GFF5889	0.22	-0.9
109,025	-		GFF5889	0.22	-0.3
109,240	+		GFF5889	0.52	-1.1
109,256	+		GFF5889	0.54	+0.3
109,256	+		GFF5889	0.54	+0.3
109,256	+		GFF5889	0.54	-0.4
109,256	+		GFF5889	0.54	+0.2
109,256	+		GFF5889	0.54	-0.4
109,256	+		GFF5889	0.54	+1.2
109,256	+		GFF5889	0.54	-0.1
109,256	+		GFF5889	0.54	+0.1
109,256	+		GFF5889	0.54	+0.3
109,256	+		GFF5889	0.54	+0.5
109,257	-		GFF5889	0.54	-0.4
109,257	-		GFF5889	0.54	-0.3
109,257	-		GFF5889	0.54	+0.3
109,257	-		GFF5889	0.54	+0.1
109,257	-		GFF5889	0.54	-0.7
109,270	+		GFF5889	0.56	+0.1
109,270	+		GFF5889	0.56	+0.4
109,270	+		GFF5889	0.56	-0.2
109,270	+		GFF5889	0.56	-0.3
109,270	+		GFF5889	0.56	-0.6
109,270	+		GFF5889	0.56	+0.0
109,271	-		GFF5889	0.56	+1.0
109,271	-		GFF5889	0.56	+0.4
109,347	+		GFF5889	0.67	-0.2
109,348	-		GFF5889	0.67	+0.3
109,393	+		GFF5889	0.74	-0.6
109,394	-		GFF5889	0.74	-0.2
109,394	-		GFF5889	0.74	+0.6
109,394	-		GFF5889	0.74	+1.1
110,377	-				+0.4
110,377	-				+2.3