Strain Fitness in Variovorax sp. SCN45 around GFF5434

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
57,730	+				+0.4
57,730	+				+1.2
57,730	+				-0.1
57,730	+				-1.0
57,730	+				-0.2
57,730	+				-0.6
57,730	+				+0.1
57,730	+				-1.4
57,730	+				-1.3
57,730	+				-1.7
57,730	+				-0.5
57,730	+				+1.5
57,730	+				-0.8
57,730	+				-0.3
57,730	+				-1.6
57,731	-				-0.6
57,731	-				+0.0
57,731	-				+1.0
57,731	-				+0.6
57,731	-				-0.3
57,731	-				-0.1
57,731	-				+0.4
57,731	-				+0.8
57,731	-				-0.8
57,731	-				+1.3
57,731	-				-0.5
57,731	-				+0.4
57,761	+				+1.4
57,761	+				-2.1
57,761	+				+0.5
57,761	+				-0.4
57,761	+				-0.3
57,761	+				-0.5
57,761	+				+0.7
57,761	+				+0.8
57,761	+				+0.5
57,761	+				-0.5
57,761	+				-0.4
57,761	+				-0.1
57,761	+				+0.2
57,761	+				+0.1
57,761	+				-0.1
57,761	+				-1.7
57,762	-				+0.4
57,762	-				+0.7
57,762	-				+0.4
57,762	-				-0.9
57,762	-				+0.2
57,762	-				+1.0
57,762	-				-0.6
57,762	-				-0.3
57,762	-				+0.8
57,762	-				-0.1
57,762	-				+0.7
57,762	-				+0.9
57,762	-				+0.0
57,762	-				+1.2
57,762	-				+0.3
57,762	-				-0.4
57,762	-				-0.8
57,762	-				-2.0
57,890	+				-2.1
57,891	-				+0.1
57,891	-				-1.0
57,891	-				-0.7
57,891	-				-0.1
57,929	+				-0.1
57,929	+				+0.7
57,929	+				-0.8
57,929	+				-1.9
57,929	+				+0.0
57,929	+				-1.2
57,929	+				+0.9
57,929	+				-1.0
57,929	+				-0.4
57,930	-				-0.4
57,930	-				+1.0
57,930	-				-0.4
57,930	-				+0.2
57,930	-				-0.6
57,930	-				+0.2
57,930	-				-0.6
57,930	-				-0.2
57,930	-				-0.2
57,930	-				+0.0
57,930	-				-0.7
57,930	-				+0.3
57,938	+				-0.1
58,154	+		GFF5433	0.33	+0.1
58,154	+		GFF5433	0.33	+0.1
58,154	+		GFF5433	0.33	-0.3
58,154	+		GFF5433	0.33	-0.2
58,154	+		GFF5433	0.33	+1.2
58,154	+		GFF5433	0.33	-0.7
58,154	+		GFF5433	0.33	+0.2
58,154	+		GFF5433	0.33	-0.3
58,154	+		GFF5433	0.33	+0.4
58,154	+		GFF5433	0.33	+0.5
58,154	+		GFF5433	0.33	+3.1
58,154	+		GFF5433	0.33	-0.5
58,154	+		GFF5433	0.33	-0.9
58,154	+		GFF5433	0.33	+0.6
58,154	+		GFF5433	0.33	-0.9
58,155	+		GFF5433	0.33	+2.8
58,155	-		GFF5433	0.33	-0.1
58,155	-		GFF5433	0.33	+0.7
58,155	-		GFF5433	0.33	-0.2
58,155	-		GFF5433	0.33	-1.4
58,155	-		GFF5433	0.33	-0.6
58,155	-		GFF5433	0.33	-0.6
58,155	-		GFF5433	0.33	-0.5
58,155	-		GFF5433	0.33	-0.2
58,155	-		GFF5433	0.33	-0.1
58,155	-		GFF5433	0.33	-1.4
58,155	-		GFF5433	0.33	-1.6
58,155	-		GFF5433	0.33	+0.2
58,155	-		GFF5433	0.33	+0.4
58,155	-		GFF5433	0.33	-0.0
58,155	-		GFF5433	0.33	+0.7
58,155	-		GFF5433	0.33	-0.4
58,155	-		GFF5433	0.33	-0.4
58,155	-		GFF5433	0.33	+0.0
58,155	-		GFF5433	0.33	+0.4
58,155	-		GFF5433	0.33	-1.4
58,155	-		GFF5433	0.33	-0.6
58,199	+		GFF5433	0.38	+0.1
58,200	-		GFF5433	0.38	-0.8
58,200	-		GFF5433	0.38	-0.0
58,200	-		GFF5433	0.38	-1.5
58,319	+		GFF5433	0.53	+0.6
58,319	+		GFF5433	0.53	+1.4
58,319	+		GFF5433	0.53	-0.6
58,319	+		GFF5433	0.53	+0.1
58,319	+		GFF5433	0.53	-0.0
58,319	+		GFF5433	0.53	-0.1
58,319	+		GFF5433	0.53	-0.5
58,319	+		GFF5433	0.53	-0.3
58,319	+		GFF5433	0.53	-0.3
58,319	+		GFF5433	0.53	+0.4
58,319	+		GFF5433	0.53	-0.6
58,319	+		GFF5433	0.53	-0.8
58,319	+		GFF5433	0.53	+1.0
58,319	+		GFF5433	0.53	-1.6
58,319	+		GFF5433	0.53	-0.6
58,319	+		GFF5433	0.53	+0.2
58,319	+		GFF5433	0.53	-0.1
58,319	+		GFF5433	0.53	-0.0
58,319	+		GFF5433	0.53	-0.3
58,319	+		GFF5433	0.53	+2.3
58,319	+		GFF5433	0.53	+0.2
58,319	+		GFF5433	0.53	+0.4
58,319	+		GFF5433	0.53	-0.6
58,319	+		GFF5433	0.53	+0.2
58,319	+		GFF5433	0.53	+3.3
58,319	+		GFF5433	0.53	-0.9
58,319	+		GFF5433	0.53	-0.6
58,319	+		GFF5433	0.53	-0.5
58,319	+		GFF5433	0.53	-1.0
58,319	+		GFF5433	0.53	-0.2
58,319	+		GFF5433	0.53	+1.4
58,320	-		GFF5433	0.53	+0.8
58,320	-		GFF5433	0.53	-0.8
58,320	-		GFF5433	0.53	-0.4
58,320	-		GFF5433	0.53	+1.7
58,320	-		GFF5433	0.53	-0.5
58,320	-		GFF5433	0.53	+0.3
58,320	-		GFF5433	0.53	-1.2
58,320	-		GFF5433	0.53	+0.5
58,320	-		GFF5433	0.53	+1.2
58,320	-		GFF5433	0.53	-0.2
58,320	-		GFF5433	0.53	-0.6
58,320	-		GFF5433	0.53	-0.5
58,320	-		GFF5433	0.53	+0.3
58,320	-		GFF5433	0.53	+0.6
58,320	-		GFF5433	0.53	+0.5
58,320	-		GFF5433	0.53	-0.0
58,320	-		GFF5433	0.53	+0.2
58,320	-		GFF5433	0.53	+0.5
58,320	-		GFF5433	0.53	-0.1
58,320	-		GFF5433	0.53	-0.6
58,320	-		GFF5433	0.53	-1.0
58,320	-		GFF5433	0.53	-0.5
58,320	-		GFF5433	0.53	-0.9
58,320	-		GFF5433	0.53	-0.2
58,320	-		GFF5433	0.53	+0.1
58,320	-		GFF5433	0.53	-0.9
58,320	-		GFF5433	0.53	+0.2
58,320	-		GFF5433	0.53	+0.5
58,382	+		GFF5433	0.61	-0.1
58,382	+		GFF5433	0.61	-1.0
58,382	+		GFF5433	0.61	+0.3
58,382	+		GFF5433	0.61	+0.1
58,382	+		GFF5433	0.61	+0.2
58,382	+		GFF5433	0.61	+0.7
58,382	+		GFF5433	0.61	-0.1
58,383	-		GFF5433	0.61	-0.8
58,383	-		GFF5433	0.61	-0.6
58,383	-		GFF5433	0.61	+0.4
58,383	-		GFF5433	0.61	+1.0
58,383	-		GFF5433	0.61	+1.0
58,383	-		GFF5433	0.61	+0.3
58,383	-		GFF5433	0.61	-0.6
58,383	-		GFF5433	0.61	-0.0
58,801	+				+0.6
58,801	+				+0.6
58,801	+				+0.1
58,801	+				-1.5
58,801	+				+0.1
58,801	+				+1.0
58,801	+				-1.2
58,801	+				-1.1
58,801	+				+1.0
58,801	+				+0.5
58,801	+				-0.2
58,801	+				-0.7
58,802	-				+0.7
58,802	-				+1.7
58,802	-				+1.0
58,802	-				-1.4
58,802	-				-0.2
58,802	-				-0.1
58,802	-				-0.0
58,802	-				+0.8
58,852	+		GFF5434	0.13	-0.1
58,852	+		GFF5434	0.13	-0.3
58,852	+		GFF5434	0.13	+0.1
58,852	+		GFF5434	0.13	+0.6
58,852	+		GFF5434	0.13	-0.5
58,852	+		GFF5434	0.13	+0.7
58,852	+		GFF5434	0.13	+0.2
58,852	+		GFF5434	0.13	-0.8
58,852	+		GFF5434	0.13	+0.8
58,852	+		GFF5434	0.13	+0.6
58,853	-		GFF5434	0.13	-0.8
58,853	-		GFF5434	0.13	-0.4
58,853	-		GFF5434	0.13	-1.4
58,853	-		GFF5434	0.13	-0.4
58,936	+		GFF5434	0.20	-0.6
58,936	+		GFF5434	0.20	+0.7
58,937	-		GFF5434	0.20	+0.5
59,156	+		GFF5434	0.37	-0.8
59,157	-		GFF5434	0.37	-1.2
59,194	-		GFF5434	0.40	-0.0
59,197	+		GFF5434	0.40	-0.4
59,197	+		GFF5434	0.40	-0.5
59,197	+		GFF5434	0.40	-0.6
59,197	+		GFF5434	0.40	+0.5
59,197	+		GFF5434	0.40	+0.5
59,197	+		GFF5434	0.40	+0.2
59,197	+		GFF5434	0.40	-0.1
59,197	+		GFF5434	0.40	-1.9
59,198	-		GFF5434	0.40	-1.4
59,198	-		GFF5434	0.40	-0.0
59,198	-		GFF5434	0.40	-0.2
59,198	-		GFF5434	0.40	-0.8
59,605	+		GFF5434	0.72	+2.6
59,605	+		GFF5434	0.72	-0.0
59,606	-		GFF5434	0.72	-0.3
59,606	-		GFF5434	0.72	+0.7
59,614	+		GFF5434	0.73	-0.2
59,615	-		GFF5434	0.73	+1.8
59,615	-		GFF5434	0.73	+0.5
59,615	-		GFF5434	0.73	+0.1
59,615	-		GFF5434	0.73	-0.4
59,615	-		GFF5434	0.73	+1.0
59,615	-		GFF5434	0.73	+0.6
59,615	-		GFF5434	0.73	-0.2
59,881	+				-0.0
59,881	+				-2.1
59,881	+				-0.6
59,882	-				-0.4
59,882	-				-0.4
59,882	-				-0.0
59,882	-				+0.1
59,882	-				+0.3
59,902	+				-1.7
59,902	+				-1.4
59,902	+				-0.6
59,902	+				-0.5
59,902	+				-0.0
59,902	+				-0.4
59,902	+				-0.4
59,902	+				+0.2
59,902	+				+1.0
59,902	+				-0.2
59,902	+				+0.2
59,903	-				-0.5
59,903	-				+0.4
59,903	-				-0.2
59,903	-				+2.0
59,903	-				+0.4
59,903	-				-1.1
59,903	-				-1.4
59,903	-				+0.5
59,903	-				-0.4
59,903	-				-0.4
59,903	-				+1.4
59,903	-				+0.2
59,903	-				+0.1
59,903	-				-0.2
59,903	-				-0.5
59,947	+				-1.2
59,948	-				-0.6
59,948	-				-1.2
59,948	-				-1.3
59,948	-				-0.0
60,004	+				-0.6
60,004	+				-0.4
60,004	+				+0.2
60,005	-				+0.3
60,022	+				+0.9
60,022	+				+0.2
60,022	+				+0.4
60,022	+				-0.3
60,022	+				+2.0
60,022	+				+1.4
60,022	+				+0.7
60,022	+				-1.2
60,022	+				-0.6
60,023	-				-0.3
60,023	-				-0.3
60,023	-				-0.0
60,023	-				+1.4
60,030	+				+0.2
60,030	+				-1.9
60,030	+				-0.6
60,030	+				-0.3
60,030	+				+0.2
60,030	+				-0.6
60,030	+				-0.2
60,030	+				-1.4
60,030	+				-0.0
60,030	+				-0.8
60,030	+				+1.0
60,030	+				-0.7
60,030	+				+0.5
60,030	+				-0.4
60,030	+				+0.6
60,030	+				+1.8
60,030	+				-0.3
60,030	+				-1.9
60,030	+				-0.1
60,031	-				-0.7
60,031	-				-0.2
60,031	-				-0.3
60,031	-				-0.4
60,031	-				-0.0
60,031	-				+0.0
60,031	-				+1.7
60,031	-				+0.6
60,031	-				-0.1
60,067	+				-0.8
60,068	-				-0.0
60,068	-				-0.6
60,068	-				-0.7
60,068	-				-0.7
60,076	+				+1.6
60,076	+				-0.1
60,076	+				-0.4
60,076	+				-1.4
60,076	+				-0.3
60,076	+				+0.5
60,076	+				+0.6
60,076	+				-0.1
60,077	-				-0.1
60,077	-				+0.5
60,077	-				-3.1
60,178	+		GFF5435	0.14	-1.2
60,178	+		GFF5435	0.14	+0.3
60,179	-		GFF5435	0.14	-0.6
60,179	-		GFF5435	0.14	-0.4
60,280	+		GFF5435	0.23	-1.2
60,280	+		GFF5435	0.23	+0.7
60,280	+		GFF5435	0.23	-0.5
60,280	+		GFF5435	0.23	+1.3
60,280	+		GFF5435	0.23	+1.0
60,280	+		GFF5435	0.23	-1.0
60,280	+		GFF5435	0.23	+0.1
60,280	+		GFF5435	0.23	-0.7
60,280	+		GFF5435	0.23	+0.3
60,280	+		GFF5435	0.23	-0.4
60,280	+		GFF5435	0.23	+1.7
60,280	+		GFF5435	0.23	+0.4
60,280	+		GFF5435	0.23	+0.1
60,280	+		GFF5435	0.23	+0.4
60,280	+		GFF5435	0.23	-0.6
60,280	+		GFF5435	0.23	-0.2
60,280	+		GFF5435	0.23	-1.3
60,280	+		GFF5435	0.23	-0.2
60,280	+		GFF5435	0.23	+0.8
60,280	+		GFF5435	0.23	+0.4
60,280	+		GFF5435	0.23	-0.4
60,280	+		GFF5435	0.23	+2.0
60,280	+		GFF5435	0.23	-0.8
60,280	+		GFF5435	0.23	-0.0
60,280	+		GFF5435	0.23	-0.3
60,280	+		GFF5435	0.23	-0.1
60,280	+		GFF5435	0.23	+1.0
60,280	+		GFF5435	0.23	+0.1
60,280	+		GFF5435	0.23	-0.1
60,280	+		GFF5435	0.23	-0.2
60,280	+		GFF5435	0.23	-0.4
60,280	+		GFF5435	0.23	+0.3
60,280	+		GFF5435	0.23	+0.8
60,280	+		GFF5435	0.23	+0.4
60,280	+		GFF5435	0.23	-0.5
60,280	+		GFF5435	0.23	-0.8
60,280	+		GFF5435	0.23	-0.1
60,280	+		GFF5435	0.23	+0.0
60,280	+		GFF5435	0.23	-2.2
60,280	+		GFF5435	0.23	-0.2
60,280	+		GFF5435	0.23	+0.1
60,280	+		GFF5435	0.23	-0.6
60,280	+		GFF5435	0.23	+1.0
60,280	+		GFF5435	0.23	+0.4
60,280	+		GFF5435	0.23	+0.5
60,280	+		GFF5435	0.23	-0.8
60,281	-		GFF5435	0.23	-1.5
60,281	-		GFF5435	0.23	-1.3
60,281	-		GFF5435	0.23	-1.0
60,281	-		GFF5435	0.23	-0.6
60,281	-		GFF5435	0.23	-2.4
60,281	-		GFF5435	0.23	-0.5
60,281	-		GFF5435	0.23	-1.5
60,281	-		GFF5435	0.23	-1.0
60,281	-		GFF5435	0.23	-0.0
60,281	-		GFF5435	0.23	+0.3
60,281	-		GFF5435	0.23	-0.4
60,281	-		GFF5435	0.23	+0.4
60,281	-		GFF5435	0.23	+1.1
60,281	-		GFF5435	0.23	-0.6
60,281	-		GFF5435	0.23	+0.1
60,281	-		GFF5435	0.23	+0.2
60,281	-		GFF5435	0.23	+0.2
60,281	-		GFF5435	0.23	-2.9
60,281	-		GFF5435	0.23	+0.3
60,281	-		GFF5435	0.23	+1.2
60,281	-		GFF5435	0.23	-0.2
60,281	-		GFF5435	0.23	-1.3
60,281	-		GFF5435	0.23	+0.8
60,281	-		GFF5435	0.23	+0.9
60,281	-		GFF5435	0.23	-0.2
60,281	-		GFF5435	0.23	+2.2
60,281	-		GFF5435	0.23	-0.4
60,281	-		GFF5435	0.23	-0.5
60,281	-		GFF5435	0.23	-0.1
60,281	-		GFF5435	0.23	-1.5
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