Strain Fitness in Variovorax sp. SCN45 around GFF527

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF525 and GFF526 are separated by 131 nucleotidesGFF526 and GFF527 overlap by 4 nucleotidesGFF527 and GFF528 are separated by 18 nucleotidesGFF528 and GFF529 are separated by 42 nucleotides GFF525 - Tripartite tricarboxylate transporter TctC family, at 567,387 to 568,346 GFF525 GFF526 - Tricarboxylate transport transcriptional regulator TctD, at 568,478 to 569,158 GFF526 GFF527 - Tricarboxylate transport sensor protein TctE, at 569,155 to 570,585 GFF527 GFF528 - Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog), at 570,604 to 571,038 GFF528 GFF529 - UDP-galactose-lipid carrier transferase (EC 2.-.-.-), at 571,081 to 571,887 GFF529 Position (kb) 569 570 571Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 568.159 kb on + strand, within GFF525at 568.159 kb on + strand, within GFF525at 568.160 kb on - strand, within GFF525at 568.160 kb on - strand, within GFF525at 568.400 kb on + strandat 568.400 kb on + strandat 568.400 kb on + strandat 568.400 kb on + strandat 568.400 kb on + strandat 568.401 kb on - strandat 568.401 kb on - strandat 568.401 kb on - strandat 568.401 kb on - strandat 568.477 kb on + strandat 568.477 kb on + strandat 568.477 kb on + strandat 568.477 kb on + strandat 568.477 kb on + strandat 568.478 kb on - strandat 568.478 kb on - strandat 568.478 kb on - strandat 568.770 kb on - strand, within GFF526at 568.770 kb on - strand, within GFF526at 568.770 kb on - strand, within GFF526at 568.770 kb on - strand, within GFF526at 568.770 kb on - strand, within GFF526at 568.770 kb on - strand, within GFF526at 568.913 kb on + strand, within GFF526at 568.913 kb on + strand, within GFF526at 568.913 kb on + strand, within GFF526at 568.913 kb on + strand, within GFF526at 568.913 kb on + strand, within GFF526at 568.913 kb on + strand, within GFF526at 568.913 kb on + strand, within GFF526at 568.913 kb on + strand, within GFF526at 568.913 kb on + strand, within GFF526at 568.914 kb on - strand, within GFF526at 568.914 kb on - strand, within GFF526at 568.914 kb on - strand, within GFF526at 568.914 kb on - strand, within GFF526at 568.914 kb on - strand, within GFF526at 568.914 kb on - strand, within GFF526at 568.914 kb on - strand, within GFF526at 569.048 kb on + strand, within GFF526at 569.048 kb on + strand, within GFF526at 569.048 kb on + strand, within GFF526at 569.048 kb on + strand, within GFF526at 569.049 kb on - strand, within GFF526at 569.049 kb on - strand, within GFF526at 569.135 kb on + strandat 569.135 kb on + strandat 569.136 kb on - strandat 569.136 kb on - strandat 569.163 kb on + strandat 569.163 kb on + strandat 569.163 kb on + strandat 569.163 kb on + strandat 569.163 kb on + strandat 569.163 kb on + strandat 569.163 kb on + strandat 569.163 kb on + strandat 569.163 kb on + strandat 569.163 kb on + strandat 569.163 kb on + strandat 569.163 kb on + strandat 569.163 kb on + strandat 569.164 kb on - strandat 569.164 kb on - strandat 569.164 kb on - strandat 569.164 kb on - strandat 569.164 kb on - strandat 569.164 kb on - strandat 569.164 kb on - strandat 569.164 kb on - strandat 569.164 kb on - strandat 569.164 kb on - strandat 569.164 kb on - strandat 569.164 kb on - strandat 569.164 kb on - strandat 569.164 kb on - strandat 569.164 kb on - strandat 569.246 kb on - strandat 569.278 kb on + strandat 569.278 kb on + strandat 569.338 kb on + strand, within GFF527at 569.338 kb on + strand, within GFF527at 569.338 kb on + strand, within GFF527at 569.339 kb on - strand, within GFF527at 569.374 kb on + strand, within GFF527at 569.374 kb on + strand, within GFF527at 569.375 kb on - strand, within GFF527at 569.375 kb on - strand, within GFF527at 569.422 kb on + strand, within GFF527at 569.423 kb on - strand, within GFF527at 569.423 kb on - strand, within GFF527at 569.531 kb on - strand, within GFF527at 569.531 kb on - strand, within GFF527at 570.586 kb on + strandat 570.587 kb on - strandat 570.587 kb on - strandat 570.841 kb on + strand, within GFF528at 570.841 kb on + strand, within GFF528at 570.841 kb on + strand, within GFF528at 570.841 kb on + strand, within GFF528at 570.841 kb on + strand, within GFF528at 570.842 kb on - strand, within GFF528at 570.842 kb on - strand, within GFF528at 570.842 kb on - strand, within GFF528at 571.044 kb on + strandat 571.044 kb on + strandat 571.045 kb on - strandat 571.045 kb on - strandat 571.045 kb on - strandat 571.099 kb on + strandat 571.100 kb on - strandat 571.106 kb on + strandat 571.107 kb on - strandat 571.390 kb on + strand, within GFF529at 571.390 kb on + strand, within GFF529at 571.390 kb on + strand, within GFF529at 571.390 kb on + strand, within GFF529at 571.390 kb on + strand, within GFF529at 571.390 kb on + strand, within GFF529at 571.390 kb on + strand, within GFF529at 571.391 kb on - strand, within GFF529at 571.391 kb on - strand, within GFF529at 571.391 kb on - strand, within GFF529at 571.391 kb on - strand, within GFF529at 571.391 kb on - strand, within GFF529at 571.391 kb on - strand, within GFF529at 571.391 kb on - strand, within GFF529at 571.472 kb on + strand, within GFF529at 571.472 kb on + strand, within GFF529

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
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568,159 + GFF525 0.80 -0.4
568,159 + GFF525 0.80 +0.4
568,160 - GFF525 0.81 +0.0
568,160 - GFF525 0.81 +1.9
568,400 + -0.0
568,400 + -0.6
568,400 + -0.5
568,400 + -0.8
568,400 + -0.9
568,401 - -0.5
568,401 - +0.9
568,401 - +0.5
568,401 - +1.5
568,477 + -1.1
568,477 + -0.4
568,477 + +0.5
568,477 + -0.4
568,477 + +0.8
568,478 - +0.5
568,478 - -0.0
568,478 - -0.5
568,770 - GFF526 0.43 +0.2
568,770 - GFF526 0.43 +0.9
568,770 - GFF526 0.43 +1.6
568,770 - GFF526 0.43 -0.4
568,770 - GFF526 0.43 -0.4
568,770 - GFF526 0.43 -0.7
568,913 + GFF526 0.64 -0.9
568,913 + GFF526 0.64 -0.4
568,913 + GFF526 0.64 -0.2
568,913 + GFF526 0.64 -0.0
568,913 + GFF526 0.64 -0.7
568,913 + GFF526 0.64 +1.9
568,913 + GFF526 0.64 +0.8
568,913 + GFF526 0.64 -0.4
568,913 + GFF526 0.64 -0.0
568,914 - GFF526 0.64 +0.6
568,914 - GFF526 0.64 +0.0
568,914 - GFF526 0.64 -0.3
568,914 - GFF526 0.64 -1.5
568,914 - GFF526 0.64 -0.1
568,914 - GFF526 0.64 +0.2
568,914 - GFF526 0.64 -0.1
569,048 + GFF526 0.84 +0.1
569,048 + GFF526 0.84 -0.5
569,048 + GFF526 0.84 +0.1
569,048 + GFF526 0.84 -0.5
569,049 - GFF526 0.84 +0.0
569,049 - GFF526 0.84 -0.1
569,135 + -0.1
569,135 + -0.7
569,136 - +0.6
569,136 - +0.1
569,163 + -0.4
569,163 + -0.3
569,163 + +0.6
569,163 + +0.4
569,163 + -0.3
569,163 + +0.0
569,163 + +0.3
569,163 + -0.8
569,163 + +1.6
569,163 + +0.0
569,163 + -0.4
569,163 + +0.2
569,163 + -1.0
569,164 - -0.3
569,164 - +0.7
569,164 - -0.4
569,164 - -0.4
569,164 - -0.2
569,164 - -1.0
569,164 - -1.7
569,164 - -1.1
569,164 - -0.1
569,164 - -0.5
569,164 - -0.6
569,164 - -0.2
569,164 - +0.6
569,164 - -0.4
569,164 - +0.4
569,246 - -0.1
569,278 + -0.1
569,278 + -2.0
569,338 + GFF527 0.13 +0.9
569,338 + GFF527 0.13 -0.2
569,338 + GFF527 0.13 -0.1
569,339 - GFF527 0.13 -0.0
569,374 + GFF527 0.15 +0.0
569,374 + GFF527 0.15 +0.7
569,375 - GFF527 0.15 +1.1
569,375 - GFF527 0.15 -0.1
569,422 + GFF527 0.19 +0.1
569,423 - GFF527 0.19 -0.6
569,423 - GFF527 0.19 +0.2
569,531 - GFF527 0.26 -0.1
569,531 - GFF527 0.26 +0.4
570,586 + -0.5
570,587 - +2.4
570,587 - -0.7
570,841 + GFF528 0.54 -0.3
570,841 + GFF528 0.54 -1.1
570,841 + GFF528 0.54 -0.7
570,841 + GFF528 0.54 -1.4
570,841 + GFF528 0.54 -0.1
570,842 - GFF528 0.55 -1.4
570,842 - GFF528 0.55 -0.1
570,842 - GFF528 0.55 -0.4
571,044 + +0.7
571,044 + -2.4
571,045 - -0.3
571,045 - +0.6
571,045 - -1.5
571,099 + -0.5
571,100 - -1.1
571,106 + -0.1
571,107 - -0.7
571,390 + GFF529 0.38 -0.1
571,390 + GFF529 0.38 -2.9
571,390 + GFF529 0.38 -0.2
571,390 + GFF529 0.38 -0.4
571,390 + GFF529 0.38 -0.4
571,390 + GFF529 0.38 +0.8
571,390 + GFF529 0.38 -1.9
571,391 - GFF529 0.38 -0.1
571,391 - GFF529 0.38 -0.1
571,391 - GFF529 0.38 -0.5
571,391 - GFF529 0.38 -1.1
571,391 - GFF529 0.38 -0.5
571,391 - GFF529 0.38 -0.3
571,391 - GFF529 0.38 +2.5
571,472 + GFF529 0.48 +0.3
571,472 + GFF529 0.48 +0.4

Or see this region's nucleotide sequence