Strain Fitness in Variovorax sp. SCN45 around GFF5248

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
111,241	+		GFF5247	0.29	+1.1
111,242	-		GFF5247	0.29	-1.1
111,242	-		GFF5247	0.29	+0.5
111,242	-		GFF5247	0.29	-0.4
111,263	+		GFF5247	0.31	+0.9
111,263	+		GFF5247	0.31	-0.4
111,263	+		GFF5247	0.31	+0.4
111,386	+		GFF5247	0.42	-0.6
111,387	-		GFF5247	0.42	-2.7
111,519	+		GFF5247	0.54	-0.3
111,519	+		GFF5247	0.54	+1.2
111,520	-		GFF5247	0.54	+0.2
111,533	-		GFF5247	0.55	-0.0
111,608	+		GFF5247	0.62	-1.1
111,608	+		GFF5247	0.62	+0.2
111,608	+		GFF5247	0.62	-0.7
111,608	+		GFF5247	0.62	+1.1
111,609	-		GFF5247	0.62	-0.3
111,609	-		GFF5247	0.62	-0.6
111,609	-		GFF5247	0.62	-0.5
111,609	-		GFF5247	0.62	-0.8
111,683	+		GFF5247	0.68	-0.5
111,684	-		GFF5247	0.69	-0.6
111,684	-		GFF5247	0.69	+0.1
111,684	-		GFF5247	0.69	-0.5
111,684	-		GFF5247	0.69	-0.9
111,684	-		GFF5247	0.69	-0.3
111,719	+		GFF5247	0.72	-0.0
111,737	+		GFF5247	0.73	+0.4
111,737	+		GFF5247	0.73	+0.0
111,737	+		GFF5247	0.73	+1.4
111,737	+		GFF5247	0.73	+0.8
111,737	+		GFF5247	0.73	-0.3
111,737	+		GFF5247	0.73	-0.6
111,737	+		GFF5247	0.73	-0.8
111,737	+		GFF5247	0.73	-2.5
111,737	+		GFF5247	0.73	+0.5
111,737	+		GFF5247	0.73	-1.4
111,737	+		GFF5247	0.73	-0.7
111,737	+		GFF5247	0.73	+0.1
111,737	+		GFF5247	0.73	+0.2
111,738	-		GFF5247	0.73	-0.2
111,738	-		GFF5247	0.73	-0.2
111,738	-		GFF5247	0.73	-0.3
111,738	-		GFF5247	0.73	+0.7
111,738	-		GFF5247	0.73	-0.7
111,860	+		GFF5247	0.84	-0.6
111,860	+		GFF5247	0.84	-1.0
111,861	-		GFF5247	0.84	-1.2
111,861	-		GFF5247	0.84	+0.7
111,875	-		GFF5247	0.85	-1.8
111,899	+		GFF5247	0.88	+0.1
111,900	-		GFF5247	0.88	+1.8
111,900	-		GFF5247	0.88	-0.2
111,971	+				-1.0
111,972	-				-0.4
111,972	-				+0.5
111,972	-				-0.3
111,972	-				+0.6
111,972	-				-0.5
111,972	-				-0.2
112,222	+				-1.0
112,222	+				-0.2
112,223	-				-1.1
112,223	-				+0.5
112,223	-				+1.4
112,223	-				-0.3
112,288	+		GFF5248	0.12	-0.1
112,288	+		GFF5248	0.12	-1.3
112,322	-		GFF5248	0.15	-2.5
112,322	-		GFF5248	0.15	-1.1
112,322	-		GFF5248	0.15	-1.0
112,358	+		GFF5248	0.18	+0.2
112,375	+		GFF5248	0.19	+0.6
112,376	-		GFF5248	0.19	+0.2
112,399	+		GFF5248	0.21	+0.4
112,399	+		GFF5248	0.21	-0.6
112,399	+		GFF5248	0.21	-1.5
112,399	+		GFF5248	0.21	-1.0
112,414	+		GFF5248	0.22	-0.4
112,415	-		GFF5248	0.23	-0.8
112,577	-		GFF5248	0.36	-0.8
112,577	-		GFF5248	0.36	-1.3
112,655	-		GFF5248	0.43	-0.8
112,708	+		GFF5248	0.47	+1.8
112,708	+		GFF5248	0.47	-1.2
112,708	+		GFF5248	0.47	-0.8
112,708	+		GFF5248	0.47	-0.5
112,708	+		GFF5248	0.47	-0.8
112,709	-		GFF5248	0.47	-0.2
112,709	-		GFF5248	0.47	-0.5
112,709	-		GFF5248	0.47	+0.8
112,709	-		GFF5248	0.47	-2.3
112,768	+		GFF5248	0.52	-0.9
112,768	+		GFF5248	0.52	+1.1
112,768	+		GFF5248	0.52	-0.1
112,768	+		GFF5248	0.52	-0.8
112,769	-		GFF5248	0.52	-1.0
112,769	-		GFF5248	0.52	-0.5
112,769	-		GFF5248	0.52	-0.2
112,769	-		GFF5248	0.52	+0.1
112,793	-		GFF5248	0.54	+0.4
112,793	-		GFF5248	0.54	-0.7
112,793	-		GFF5248	0.54	+0.1
112,793	-		GFF5248	0.54	+0.3
112,808	-		GFF5248	0.56	+0.1
112,808	-		GFF5248	0.56	+1.2
112,808	-		GFF5248	0.56	-0.7
112,837	+		GFF5248	0.58	-0.1
112,837	+		GFF5248	0.58	-1.0
112,837	+		GFF5248	0.58	+0.9
112,837	+		GFF5248	0.58	-1.2
112,864	+		GFF5248	0.60	-0.7
112,864	+		GFF5248	0.60	+1.2
112,864	+		GFF5248	0.60	-0.5
112,864	+		GFF5248	0.60	-0.7
112,864	+		GFF5248	0.60	+0.1
112,864	+		GFF5248	0.60	+0.1
112,864	+		GFF5248	0.60	+1.2
112,865	-		GFF5248	0.61	+0.2
112,865	-		GFF5248	0.61	-0.3
112,865	-		GFF5248	0.61	-0.7
112,865	-		GFF5248	0.61	-0.1
112,921	+		GFF5248	0.65	-0.8
112,921	+		GFF5248	0.65	-0.2
112,921	+		GFF5248	0.65	+0.6
112,921	+		GFF5248	0.65	+1.3
112,921	+		GFF5248	0.65	-0.1
112,921	+		GFF5248	0.65	-0.9
112,921	+		GFF5248	0.65	-2.9
112,921	+		GFF5248	0.65	+0.6
112,921	+		GFF5248	0.65	+2.2
112,921	+		GFF5248	0.65	-1.6
112,921	+		GFF5248	0.65	+0.6
112,921	+		GFF5248	0.65	-0.1
112,922	-		GFF5248	0.65	-0.1
112,922	-		GFF5248	0.65	-1.4
112,922	-		GFF5248	0.65	+1.4
112,922	-		GFF5248	0.65	+0.2
112,922	-		GFF5248	0.65	-0.6
112,922	-		GFF5248	0.65	-0.0
113,008	+		GFF5248	0.73	-0.5
113,008	+		GFF5248	0.73	-0.2
113,188	+		GFF5248	0.88	-0.7
113,188	+		GFF5248	0.88	-0.2
113,189	-		GFF5248	0.88	-0.1
113,189	-		GFF5248	0.88	-0.6
113,189	-		GFF5248	0.88	+0.5
113,189	-		GFF5248	0.88	-0.3
113,240	+				-0.7
113,240	+				+0.8
113,241	-				-0.1
113,241	-				-2.5
113,241	-				-1.5
113,242	+				-0.8
113,242	+				-0.4
113,242	+				+0.8
113,242	+				-0.5
113,242	+				+0.9
113,242	+				+0.5
113,243	-				-0.6
113,243	-				+0.2
113,243	-				-0.3
113,243	-				-1.1
113,243	-				-0.1
113,243	-				-0.1
113,276	+				-0.3
113,277	-				-1.2
113,277	-				-0.9
113,277	-				-0.6
113,306	-				-0.2
113,417	+				+0.3
113,418	-				+0.8
113,418	-				-0.0
113,418	-				-0.4
113,486	+				-1.0
113,486	+				+0.1
113,487	-				-0.7
113,530	+				-0.3
113,530	+				-0.2
113,530	+				-0.6
113,530	+				-0.4
113,530	+				-1.4
113,530	+				+0.5
113,530	+				+0.2
113,530	+				-0.2
113,530	+				-0.1
113,530	+				-0.4
113,531	-				-0.2
113,531	-				+0.9
113,531	-				+1.3
113,531	-				-0.3
113,548	+				+1.2
113,548	+				-1.1
113,548	+				+2.4
113,549	-				+0.5
113,553	+				+0.8
113,553	+				+0.2
113,553	+				-1.8
113,553	+				-0.4
113,553	+				-0.1
113,554	-				-0.4
113,554	-				-0.1
113,554	-				+0.1
113,554	-				-0.4
113,554	-				-0.5
113,668	-				-0.4
113,677	+				+0.0
113,677	+				-2.2
113,677	+				+0.3
113,677	+				-0.2
113,677	+				-0.1
113,677	+				-0.1
113,677	+				-0.4
113,677	+				+0.9
113,677	+				-0.8
113,677	+				+0.8
113,677	+				-0.5
113,677	+				+0.9
113,677	+				-1.2
113,678	-				-0.4
113,678	-				-1.5
113,678	-				-1.1
113,678	-				-0.2
113,678	-				+0.5
113,678	-				-0.6
113,678	-				-1.1
113,678	-				-0.9
113,678	-				-1.1
113,849	+		GFF5249	0.41	+0.1
113,849	+		GFF5249	0.41	+1.6
113,849	+		GFF5249	0.41	+0.3
113,849	+		GFF5249	0.41	-0.8
113,850	-		GFF5249	0.41	+1.1
113,850	-		GFF5249	0.41	-1.4
113,850	-		GFF5249	0.41	-0.9
113,856	+		GFF5249	0.43	-1.2
113,856	+		GFF5249	0.43	+0.2
113,856	+		GFF5249	0.43	-0.8
113,856	+		GFF5249	0.43	-1.0
113,856	+		GFF5249	0.43	-0.2
113,856	+		GFF5249	0.43	+0.3
113,856	+		GFF5249	0.43	+0.1
113,856	+		GFF5249	0.43	-1.4
113,856	+		GFF5249	0.43	-0.5
113,856	+		GFF5249	0.43	-0.4
113,857	-		GFF5249	0.43	-1.4
113,857	-		GFF5249	0.43	-0.3
113,857	-		GFF5249	0.43	+0.0
113,857	-		GFF5249	0.43	-0.3
113,857	-		GFF5249	0.43	-1.0
113,857	-		GFF5249	0.43	-0.1
113,857	-		GFF5249	0.43	-0.1
114,042	+		GFF5249	0.84	+0.1
114,042	+		GFF5249	0.84	-1.0
114,042	+		GFF5249	0.84	-0.4
114,042	+		GFF5249	0.84	-2.3
114,042	+		GFF5249	0.84	-1.1
114,042	+		GFF5249	0.84	+0.5
114,043	-		GFF5249	0.84	-1.1
114,043	-		GFF5249	0.84	+0.3
114,043	-		GFF5249	0.84	-0.8
114,043	-		GFF5249	0.84	-2.0
114,043	-		GFF5249	0.84	-0.2
114,043	-		GFF5249	0.84	-0.5