Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4839 and GFF4840 are separated by 582 nucleotides GFF4840 and GFF4841 overlap by 4 nucleotides
GFF4839 - Transcriptional regulator PA2737, MerR family, at 209,239 to 209,706
GFF4839
GFF4840 - FIG00956188: hypothetical protein, at 210,289 to 210,534
GFF4840
GFF4841 - Conjugative transfer protein TrbI, at 210,531 to 211,802
GFF4841
Position (kb) 210
211 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 209.332 kb on + strand, within GFF4839 at 209.389 kb on + strand, within GFF4839 at 209.389 kb on + strand, within GFF4839 at 209.389 kb on + strand, within GFF4839 at 209.392 kb on + strand, within GFF4839 at 209.392 kb on + strand, within GFF4839 at 209.393 kb on - strand, within GFF4839 at 209.393 kb on - strand, within GFF4839 at 209.440 kb on + strand, within GFF4839 at 209.714 kb on + strand at 209.714 kb on + strand at 209.715 kb on - strand at 209.718 kb on + strand at 209.718 kb on + strand at 209.718 kb on + strand at 209.718 kb on + strand at 209.718 kb on + strand at 209.718 kb on + strand at 209.718 kb on + strand at 209.718 kb on + strand at 209.719 kb on - strand at 209.719 kb on - strand at 209.719 kb on - strand at 209.719 kb on - strand at 209.719 kb on - strand at 209.719 kb on - strand at 209.719 kb on - strand at 209.719 kb on - strand at 209.719 kb on - strand at 209.719 kb on - strand at 209.719 kb on - strand at 209.719 kb on - strand at 209.720 kb on + strand at 209.817 kb on + strand at 209.817 kb on + strand at 209.817 kb on + strand at 209.817 kb on + strand at 209.817 kb on + strand at 209.818 kb on - strand at 209.821 kb on + strand at 209.821 kb on + strand at 209.821 kb on + strand at 209.821 kb on + strand at 209.821 kb on + strand at 209.821 kb on + strand at 209.821 kb on + strand at 209.821 kb on + strand at 209.821 kb on + strand at 209.821 kb on + strand at 209.821 kb on + strand at 209.821 kb on + strand at 209.821 kb on + strand at 209.821 kb on + strand at 209.821 kb on + strand at 209.822 kb on - strand at 209.822 kb on - strand at 209.822 kb on - strand at 209.822 kb on - strand at 209.822 kb on - strand at 209.822 kb on - strand at 209.822 kb on - strand at 209.822 kb on - strand at 209.936 kb on + strand at 209.936 kb on + strand at 209.936 kb on + strand at 209.936 kb on + strand at 209.936 kb on + strand at 209.937 kb on - strand at 209.937 kb on - strand at 209.937 kb on - strand at 209.950 kb on + strand at 209.951 kb on - strand at 209.951 kb on - strand at 209.951 kb on - strand at 209.951 kb on - strand at 210.065 kb on + strand at 210.065 kb on + strand at 210.065 kb on + strand at 210.066 kb on - strand at 210.066 kb on - strand at 210.066 kb on - strand at 210.072 kb on + strand at 210.073 kb on - strand at 210.073 kb on - strand at 210.073 kb on - strand at 210.075 kb on + strand at 210.075 kb on + strand at 210.075 kb on + strand at 210.075 kb on + strand at 210.075 kb on + strand at 210.075 kb on + strand at 210.075 kb on + strand at 210.075 kb on + strand at 210.075 kb on + strand at 210.075 kb on + strand at 210.075 kb on + strand at 210.075 kb on + strand at 210.075 kb on + strand at 210.075 kb on + strand at 210.075 kb on + strand at 210.075 kb on + strand at 210.075 kb on + strand at 210.075 kb on + strand at 210.076 kb on - strand at 210.076 kb on - strand at 210.076 kb on - strand at 210.076 kb on - strand at 210.076 kb on - strand at 210.076 kb on - strand at 210.076 kb on - strand at 210.076 kb on - strand at 210.076 kb on - strand at 210.076 kb on - strand at 210.076 kb on - strand at 210.076 kb on - strand at 210.124 kb on + strand at 210.124 kb on + strand at 210.124 kb on + strand at 210.124 kb on + strand at 210.124 kb on + strand at 210.124 kb on + strand at 210.124 kb on + strand at 210.125 kb on - strand at 210.125 kb on - strand at 210.125 kb on - strand at 210.135 kb on + strand at 210.135 kb on + strand at 210.135 kb on + strand at 210.136 kb on - strand at 210.136 kb on - strand at 210.152 kb on + strand at 210.153 kb on - strand at 210.153 kb on - strand at 210.196 kb on + strand at 210.196 kb on + strand at 210.196 kb on + strand at 210.196 kb on + strand at 210.197 kb on - strand at 210.197 kb on - strand at 210.197 kb on - strand at 210.407 kb on + strand, within GFF4840 at 210.408 kb on - strand, within GFF4840 at 210.408 kb on - strand, within GFF4840 at 210.408 kb on - strand, within GFF4840 at 210.432 kb on - strand, within GFF4840 at 210.568 kb on + strand at 210.568 kb on + strand at 210.847 kb on + strand, within GFF4841 at 210.946 kb on + strand, within GFF4841 at 210.946 kb on + strand, within GFF4841 at 210.947 kb on - strand, within GFF4841 at 210.947 kb on - strand, within GFF4841 at 210.947 kb on - strand, within GFF4841 at 210.947 kb on - strand, within GFF4841 at 210.947 kb on - strand, within GFF4841 at 210.947 kb on - strand, within GFF4841 at 210.964 kb on + strand, within GFF4841 at 210.964 kb on + strand, within GFF4841 at 210.964 kb on + strand, within GFF4841 at 210.964 kb on + strand, within GFF4841 at 210.964 kb on + strand, within GFF4841 at 210.964 kb on + strand, within GFF4841 at 210.964 kb on + strand, within GFF4841 at 210.965 kb on - strand, within GFF4841 at 210.965 kb on - strand, within GFF4841 at 210.965 kb on - strand, within GFF4841 at 210.965 kb on - strand, within GFF4841 at 210.965 kb on - strand, within GFF4841 at 210.965 kb on - strand, within GFF4841 at 211.024 kb on + strand, within GFF4841 at 211.024 kb on + strand, within GFF4841 at 211.024 kb on + strand, within GFF4841 at 211.024 kb on + strand, within GFF4841 at 211.024 kb on + strand, within GFF4841 at 211.025 kb on - strand, within GFF4841 at 211.123 kb on + strand, within GFF4841 at 211.124 kb on - strand, within GFF4841 at 211.435 kb on + strand, within GFF4841 at 211.435 kb on + strand, within GFF4841 at 211.435 kb on + strand, within GFF4841 at 211.436 kb on - strand, within GFF4841 at 211.436 kb on - strand, within GFF4841 at 211.436 kb on - strand, within GFF4841 at 211.436 kb on - strand, within GFF4841 at 211.436 kb on - strand, within GFF4841 at 211.436 kb on - strand, within GFF4841 at 211.436 kb on - strand, within GFF4841 at 211.436 kb on - strand, within GFF4841
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL remove 209,332 + GFF4839 0.20 -0.4 209,389 + GFF4839 0.32 +0.1 209,389 + GFF4839 0.32 -0.6 209,389 + GFF4839 0.32 +0.8 209,392 + GFF4839 0.33 -1.0 209,392 + GFF4839 0.33 -1.6 209,393 - GFF4839 0.33 +0.2 209,393 - GFF4839 0.33 -1.3 209,440 + GFF4839 0.43 +0.5 209,714 + -1.5 209,714 + +0.3 209,715 - -1.6 209,718 + +1.3 209,718 + -0.1 209,718 + -0.6 209,718 + +0.8 209,718 + +0.5 209,718 + -0.4 209,718 + +1.1 209,718 + +0.0 209,719 - +0.5 209,719 - -1.1 209,719 - -0.4 209,719 - -0.4 209,719 - +0.1 209,719 - -0.1 209,719 - +0.2 209,719 - +1.2 209,719 - +0.7 209,719 - -0.3 209,719 - -0.2 209,719 - -0.4 209,720 + +0.8 209,817 + -0.5 209,817 + +1.3 209,817 + -0.5 209,817 + -0.3 209,817 + -0.2 209,818 - -0.5 209,821 + +1.5 209,821 + +0.0 209,821 + -0.5 209,821 + +0.1 209,821 + -0.8 209,821 + +0.1 209,821 + -0.7 209,821 + -0.3 209,821 + -1.0 209,821 + -0.8 209,821 + -0.9 209,821 + +0.7 209,821 + -0.4 209,821 + -0.8 209,821 + -0.3 209,822 - -0.7 209,822 - +0.1 209,822 - -1.1 209,822 - -1.3 209,822 - -0.1 209,822 - -0.1 209,822 - +1.2 209,822 - -1.2 209,936 + -0.8 209,936 + +0.4 209,936 + -0.2 209,936 + -0.4 209,936 + -0.7 209,937 - +1.2 209,937 - -0.9 209,937 - -0.1 209,950 + -0.7 209,951 - -0.8 209,951 - -0.5 209,951 - -0.4 209,951 - -0.9 210,065 + +0.2 210,065 + +0.4 210,065 + +0.1 210,066 - +0.7 210,066 - -0.4 210,066 - -0.1 210,072 + +0.3 210,073 - +1.0 210,073 - -0.8 210,073 - +0.4 210,075 + +0.1 210,075 + -0.1 210,075 + -0.6 210,075 + +0.0 210,075 + -0.5 210,075 + +0.2 210,075 + +0.1 210,075 + -0.2 210,075 + +0.4 210,075 + +1.5 210,075 + +0.9 210,075 + -1.3 210,075 + +0.1 210,075 + +0.4 210,075 + -1.7 210,075 + -0.2 210,075 + +0.9 210,075 + -0.5 210,076 - +0.5 210,076 - -0.4 210,076 - -0.3 210,076 - +0.3 210,076 - -0.6 210,076 - +0.1 210,076 - +0.0 210,076 - -0.0 210,076 - +0.0 210,076 - +0.3 210,076 - +1.9 210,076 - -0.2 210,124 + -1.0 210,124 + +0.0 210,124 + -0.1 210,124 + -0.3 210,124 + -0.3 210,124 + +0.2 210,124 + -0.6 210,125 - -2.0 210,125 - -0.2 210,125 - +1.2 210,135 + +0.3 210,135 + -1.9 210,135 + -0.1 210,136 - +0.7 210,136 - -1.5 210,152 + -0.2 210,153 - +2.1 210,153 - -0.1 210,196 + +0.8 210,196 + -1.1 210,196 + +0.2 210,196 + +0.4 210,197 - -0.0 210,197 - -0.5 210,197 - -0.7 210,407 + GFF4840 0.48 +0.2 210,408 - GFF4840 0.48 +0.3 210,408 - GFF4840 0.48 +0.9 210,408 - GFF4840 0.48 -0.2 210,432 - GFF4840 0.58 -0.2 210,568 + -2.7 210,568 + -0.8 210,847 + GFF4841 0.25 -0.4 210,946 + GFF4841 0.33 -1.1 210,946 + GFF4841 0.33 -0.8 210,947 - GFF4841 0.33 -0.3 210,947 - GFF4841 0.33 +0.7 210,947 - GFF4841 0.33 +0.7 210,947 - GFF4841 0.33 -2.6 210,947 - GFF4841 0.33 +3.1 210,947 - GFF4841 0.33 +0.6 210,964 + GFF4841 0.34 -0.1 210,964 + GFF4841 0.34 +0.4 210,964 + GFF4841 0.34 -0.5 210,964 + GFF4841 0.34 +0.4 210,964 + GFF4841 0.34 +1.2 210,964 + GFF4841 0.34 +1.9 210,964 + GFF4841 0.34 -0.4 210,965 - GFF4841 0.34 +1.3 210,965 - GFF4841 0.34 -0.2 210,965 - GFF4841 0.34 +0.1 210,965 - GFF4841 0.34 -1.3 210,965 - GFF4841 0.34 -0.3 210,965 - GFF4841 0.34 -0.1 211,024 + GFF4841 0.39 -0.3 211,024 + GFF4841 0.39 +0.3 211,024 + GFF4841 0.39 +0.8 211,024 + GFF4841 0.39 +0.2 211,024 + GFF4841 0.39 +0.9 211,025 - GFF4841 0.39 +1.0 211,123 + GFF4841 0.47 +0.6 211,124 - GFF4841 0.47 -0.2 211,435 + GFF4841 0.71 -0.5 211,435 + GFF4841 0.71 -0.4 211,435 + GFF4841 0.71 +0.1 211,436 - GFF4841 0.71 +0.1 211,436 - GFF4841 0.71 -0.1 211,436 - GFF4841 0.71 -0.1 211,436 - GFF4841 0.71 +0.7 211,436 - GFF4841 0.71 +0.8 211,436 - GFF4841 0.71 +0.2 211,436 - GFF4841 0.71 -0.1 211,436 - GFF4841 0.71 -0.2
Or see this region's nucleotide sequence