Strain Fitness in Variovorax sp. SCN45 around GFF4520

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4518 and GFF4519 are separated by 22 nucleotidesGFF4519 and GFF4520 are separated by 39 nucleotidesGFF4520 and GFF4521 are separated by 28 nucleotidesGFF4521 and GFF4522 are separated by 8 nucleotides GFF4518 - Methylglyoxal reductase, dihydroxyacetone producing @ 2,5-didehydrogluconate reductase (2-dehydro-L-gulonate-forming) (EC 1.1.1.346), at 158,741 to 159,565 GFF4518 GFF4519 - no description, at 159,588 to 159,929 GFF4519 GFF4520 - hypothetical protein, at 159,969 to 160,391 GFF4520 GFF4521 - Guanine deaminase (EC 3.5.4.3), at 160,420 to 160,914 GFF4521 GFF4522 - Uncharacterized MFS-type transporter, at 160,923 to 162,197 GFF4522 Position (kb) 159 160 161Strain fitness (log2 ratio) -2 -1 0 1 2at 158.969 kb on + strand, within GFF4518at 158.969 kb on + strand, within GFF4518at 158.969 kb on + strand, within GFF4518at 158.969 kb on + strand, within GFF4518at 158.969 kb on + strand, within GFF4518at 158.969 kb on + strand, within GFF4518at 158.969 kb on + strand, within GFF4518at 158.969 kb on + strand, within GFF4518at 158.970 kb on - strand, within GFF4518at 158.970 kb on - strand, within GFF4518at 158.970 kb on - strand, within GFF4518at 158.970 kb on - strand, within GFF4518at 159.156 kb on - strand, within GFF4518at 159.165 kb on + strand, within GFF4518at 159.233 kb on + strand, within GFF4518at 159.293 kb on + strand, within GFF4518at 159.293 kb on + strand, within GFF4518at 159.293 kb on + strand, within GFF4518at 159.293 kb on + strand, within GFF4518at 159.293 kb on + strand, within GFF4518at 159.293 kb on + strand, within GFF4518at 159.293 kb on + strand, within GFF4518at 159.293 kb on + strand, within GFF4518at 159.293 kb on + strand, within GFF4518at 159.294 kb on - strand, within GFF4518at 159.294 kb on - strand, within GFF4518at 159.294 kb on - strand, within GFF4518at 159.294 kb on - strand, within GFF4518at 159.294 kb on - strand, within GFF4518at 159.294 kb on - strand, within GFF4518at 159.294 kb on - strand, within GFF4518at 159.294 kb on - strand, within GFF4518at 159.294 kb on - strand, within GFF4518at 159.294 kb on - strand, within GFF4518at 159.294 kb on - strand, within GFF4518at 159.308 kb on + strand, within GFF4518at 159.408 kb on - strand, within GFF4518at 159.569 kb on + strandat 159.569 kb on + strandat 159.570 kb on - strandat 159.570 kb on - strandat 159.570 kb on - strandat 159.712 kb on + strand, within GFF4519at 159.712 kb on + strand, within GFF4519at 159.712 kb on + strand, within GFF4519at 159.712 kb on + strand, within GFF4519at 159.740 kb on - strand, within GFF4519at 159.740 kb on - strand, within GFF4519at 159.740 kb on - strand, within GFF4519at 159.740 kb on - strand, within GFF4519at 159.740 kb on - strand, within GFF4519at 159.794 kb on - strand, within GFF4519at 159.794 kb on - strand, within GFF4519at 159.794 kb on - strand, within GFF4519at 159.794 kb on - strand, within GFF4519at 159.853 kb on + strand, within GFF4519at 159.853 kb on + strand, within GFF4519at 159.853 kb on + strand, within GFF4519at 159.853 kb on + strand, within GFF4519at 159.853 kb on + strand, within GFF4519at 159.853 kb on + strand, within GFF4519at 159.853 kb on + strand, within GFF4519at 159.853 kb on + strand, within GFF4519at 159.853 kb on + strand, within GFF4519at 159.854 kb on - strand, within GFF4519at 159.854 kb on - strand, within GFF4519at 159.854 kb on - strand, within GFF4519at 159.854 kb on - strand, within GFF4519at 159.857 kb on + strand, within GFF4519at 159.857 kb on + strand, within GFF4519at 159.857 kb on + strand, within GFF4519at 159.857 kb on + strand, within GFF4519at 159.857 kb on + strand, within GFF4519at 159.858 kb on - strand, within GFF4519at 159.858 kb on - strand, within GFF4519at 159.858 kb on - strand, within GFF4519at 159.874 kb on - strand, within GFF4519at 159.874 kb on - strand, within GFF4519at 159.922 kb on + strandat 159.936 kb on + strandat 159.937 kb on - strandat 160.114 kb on + strand, within GFF4520at 160.114 kb on + strand, within GFF4520at 160.114 kb on + strand, within GFF4520at 160.114 kb on + strand, within GFF4520at 160.115 kb on - strand, within GFF4520at 160.115 kb on - strand, within GFF4520at 160.132 kb on + strand, within GFF4520at 160.132 kb on + strand, within GFF4520at 160.132 kb on + strand, within GFF4520at 160.132 kb on + strand, within GFF4520at 160.133 kb on - strand, within GFF4520at 160.133 kb on - strand, within GFF4520at 160.133 kb on - strand, within GFF4520at 160.133 kb on - strand, within GFF4520at 160.133 kb on - strand, within GFF4520at 160.213 kb on + strand, within GFF4520at 160.213 kb on + strand, within GFF4520at 160.214 kb on - strand, within GFF4520at 160.214 kb on - strand, within GFF4520at 160.214 kb on - strand, within GFF4520at 160.228 kb on - strand, within GFF4520at 160.262 kb on - strand, within GFF4520at 160.268 kb on - strand, within GFF4520at 160.268 kb on - strand, within GFF4520at 160.348 kb on + strand, within GFF4520at 160.348 kb on + strand, within GFF4520at 160.348 kb on + strand, within GFF4520at 160.348 kb on + strand, within GFF4520at 160.349 kb on - strandat 160.349 kb on - strandat 160.349 kb on - strandat 160.386 kb on - strandat 160.386 kb on - strandat 160.386 kb on - strandat 160.386 kb on - strandat 160.386 kb on - strandat 160.617 kb on - strand, within GFF4521at 160.617 kb on - strand, within GFF4521at 160.617 kb on - strand, within GFF4521at 160.617 kb on - strand, within GFF4521at 160.619 kb on + strand, within GFF4521at 160.619 kb on + strand, within GFF4521at 160.619 kb on + strand, within GFF4521at 160.619 kb on + strand, within GFF4521at 160.619 kb on + strand, within GFF4521at 160.620 kb on - strand, within GFF4521at 160.620 kb on - strand, within GFF4521at 160.620 kb on - strand, within GFF4521at 160.685 kb on + strand, within GFF4521at 160.685 kb on + strand, within GFF4521at 160.686 kb on - strand, within GFF4521at 160.686 kb on - strand, within GFF4521at 160.910 kb on + strandat 160.910 kb on + strandat 160.910 kb on + strandat 160.910 kb on + strandat 160.910 kb on + strandat 160.910 kb on + strandat 160.910 kb on + strandat 160.910 kb on + strandat 160.910 kb on + strandat 160.911 kb on - strandat 160.911 kb on - strandat 160.911 kb on - strandat 160.911 kb on - strandat 160.911 kb on - strandat 160.911 kb on - strandat 160.911 kb on - strandat 161.086 kb on + strand, within GFF4522at 161.086 kb on + strand, within GFF4522at 161.087 kb on - strand, within GFF4522at 161.087 kb on - strand, within GFF4522

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
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158,969 + GFF4518 0.28 +0.4
158,969 + GFF4518 0.28 +0.3
158,969 + GFF4518 0.28 +0.8
158,969 + GFF4518 0.28 -1.2
158,969 + GFF4518 0.28 +0.3
158,969 + GFF4518 0.28 +0.8
158,969 + GFF4518 0.28 -0.0
158,969 + GFF4518 0.28 -0.5
158,970 - GFF4518 0.28 -0.8
158,970 - GFF4518 0.28 +0.4
158,970 - GFF4518 0.28 +0.8
158,970 - GFF4518 0.28 -0.5
159,156 - GFF4518 0.50 -1.2
159,165 + GFF4518 0.51 -0.2
159,233 + GFF4518 0.60 -0.2
159,293 + GFF4518 0.67 +1.8
159,293 + GFF4518 0.67 -0.0
159,293 + GFF4518 0.67 -0.5
159,293 + GFF4518 0.67 -0.1
159,293 + GFF4518 0.67 -0.8
159,293 + GFF4518 0.67 +0.8
159,293 + GFF4518 0.67 +0.9
159,293 + GFF4518 0.67 -0.4
159,293 + GFF4518 0.67 +0.4
159,294 - GFF4518 0.67 -0.8
159,294 - GFF4518 0.67 +0.1
159,294 - GFF4518 0.67 -0.7
159,294 - GFF4518 0.67 +0.8
159,294 - GFF4518 0.67 -0.8
159,294 - GFF4518 0.67 +1.1
159,294 - GFF4518 0.67 +0.1
159,294 - GFF4518 0.67 -0.5
159,294 - GFF4518 0.67 -0.0
159,294 - GFF4518 0.67 +0.1
159,294 - GFF4518 0.67 -0.1
159,308 + GFF4518 0.69 -0.8
159,408 - GFF4518 0.81 -1.2
159,569 + -0.8
159,569 + -0.1
159,570 - -0.1
159,570 - -0.0
159,570 - -0.2
159,712 + GFF4519 0.36 +0.3
159,712 + GFF4519 0.36 +0.5
159,712 + GFF4519 0.36 +0.6
159,712 + GFF4519 0.36 +1.1
159,740 - GFF4519 0.44 -0.7
159,740 - GFF4519 0.44 -0.5
159,740 - GFF4519 0.44 +0.2
159,740 - GFF4519 0.44 +0.0
159,740 - GFF4519 0.44 +0.3
159,794 - GFF4519 0.60 -0.2
159,794 - GFF4519 0.60 -0.8
159,794 - GFF4519 0.60 -0.2
159,794 - GFF4519 0.60 -1.6
159,853 + GFF4519 0.77 +0.9
159,853 + GFF4519 0.77 -0.2
159,853 + GFF4519 0.77 -0.5
159,853 + GFF4519 0.77 -0.5
159,853 + GFF4519 0.77 -0.4
159,853 + GFF4519 0.77 +0.6
159,853 + GFF4519 0.77 -0.4
159,853 + GFF4519 0.77 +0.9
159,853 + GFF4519 0.77 -2.2
159,854 - GFF4519 0.78 -0.8
159,854 - GFF4519 0.78 +1.1
159,854 - GFF4519 0.78 -0.0
159,854 - GFF4519 0.78 +0.3
159,857 + GFF4519 0.79 -1.3
159,857 + GFF4519 0.79 -1.3
159,857 + GFF4519 0.79 -0.3
159,857 + GFF4519 0.79 +1.1
159,857 + GFF4519 0.79 -0.2
159,858 - GFF4519 0.79 -1.1
159,858 - GFF4519 0.79 +0.6
159,858 - GFF4519 0.79 -1.3
159,874 - GFF4519 0.84 -0.3
159,874 - GFF4519 0.84 -1.2
159,922 + +0.8
159,936 + -0.5
159,937 - -1.2
160,114 + GFF4520 0.34 -0.5
160,114 + GFF4520 0.34 +1.1
160,114 + GFF4520 0.34 +0.9
160,114 + GFF4520 0.34 -1.5
160,115 - GFF4520 0.35 +0.8
160,115 - GFF4520 0.35 +0.3
160,132 + GFF4520 0.39 +0.8
160,132 + GFF4520 0.39 -0.1
160,132 + GFF4520 0.39 +0.2
160,132 + GFF4520 0.39 +1.7
160,133 - GFF4520 0.39 +1.3
160,133 - GFF4520 0.39 -1.0
160,133 - GFF4520 0.39 +0.2
160,133 - GFF4520 0.39 -0.2
160,133 - GFF4520 0.39 +0.8
160,213 + GFF4520 0.58 -0.5
160,213 + GFF4520 0.58 -0.6
160,214 - GFF4520 0.58 +0.4
160,214 - GFF4520 0.58 -0.8
160,214 - GFF4520 0.58 -0.7
160,228 - GFF4520 0.61 -1.2
160,262 - GFF4520 0.69 +0.8
160,268 - GFF4520 0.71 +1.8
160,268 - GFF4520 0.71 -0.5
160,348 + GFF4520 0.90 -0.1
160,348 + GFF4520 0.90 +1.5
160,348 + GFF4520 0.90 -0.4
160,348 + GFF4520 0.90 -1.6
160,349 - +0.5
160,349 - -0.8
160,349 - +0.5
160,386 - -0.4
160,386 - +1.8
160,386 - +2.2
160,386 - +0.5
160,386 - -2.1
160,617 - GFF4521 0.40 +0.3
160,617 - GFF4521 0.40 +0.4
160,617 - GFF4521 0.40 -1.2
160,617 - GFF4521 0.40 +1.3
160,619 + GFF4521 0.40 -1.3
160,619 + GFF4521 0.40 -1.6
160,619 + GFF4521 0.40 -0.0
160,619 + GFF4521 0.40 -1.7
160,619 + GFF4521 0.40 +0.8
160,620 - GFF4521 0.40 +0.3
160,620 - GFF4521 0.40 +0.7
160,620 - GFF4521 0.40 -1.2
160,685 + GFF4521 0.54 -0.4
160,685 + GFF4521 0.54 -1.0
160,686 - GFF4521 0.54 -0.5
160,686 - GFF4521 0.54 -0.5
160,910 + -0.4
160,910 + -0.3
160,910 + -0.1
160,910 + +1.3
160,910 + -0.6
160,910 + -0.3
160,910 + +0.3
160,910 + +0.1
160,910 + -0.5
160,911 - -0.1
160,911 - -0.4
160,911 - -0.1
160,911 - +0.0
160,911 - -0.2
160,911 - -1.0
160,911 - -1.3
161,086 + GFF4522 0.13 -0.2
161,086 + GFF4522 0.13 -0.0
161,087 - GFF4522 0.13 +0.4
161,087 - GFF4522 0.13 +0.3

Or see this region's nucleotide sequence