Strain Fitness in Variovorax sp. SCN45 around GFF4116

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4114 and GFF4115 are separated by 40 nucleotidesGFF4115 and GFF4116 are separated by 232 nucleotidesGFF4116 and GFF4117 are separated by 94 nucleotides GFF4114 - hypothetical protein, at 18,285 to 20,066 GFF4114 GFF4115 - Sensor protein, at 20,107 to 20,790 GFF4115 GFF4116 - Glyoxalase/bleomycin resistance protein/dioxygenase, at 21,023 to 21,457 GFF4116 GFF4117 - Translation elongation factor Tu, at 21,552 to 22,748 GFF4117 Position (kb) 21 22Strain fitness (log2 ratio) -1 0 1at 20.902 kb on + strandat 20.917 kb on - strandat 20.917 kb on - strandat 20.917 kb on - strandat 21.832 kb on + strand, within GFF4117at 22.267 kb on + strand, within GFF4117

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
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20,902 + +0.5
20,917 - -0.7
20,917 - -1.0
20,917 - -1.6
21,832 + GFF4117 0.23 -0.7
22,267 + GFF4117 0.60 +0.2

Or see this region's nucleotide sequence