Strain Fitness in Variovorax sp. SCN45 around GFF3910

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
114,616	+		GFF3909	0.67	-0.3
114,616	+		GFF3909	0.67	-0.9
114,616	+		GFF3909	0.67	+0.2
114,616	+		GFF3909	0.67	-0.0
114,616	+		GFF3909	0.67	+0.3
114,616	+		GFF3909	0.67	+0.9
114,616	+		GFF3909	0.67	-0.9
114,617	-		GFF3909	0.67	-0.2
114,617	-		GFF3909	0.67	+0.7
114,617	-		GFF3909	0.67	+0.0
114,617	-		GFF3909	0.67	-1.7
114,617	-		GFF3909	0.67	+1.0
114,617	-		GFF3909	0.67	+0.2
114,668	-		GFF3909	0.68	-0.5
114,700	+		GFF3909	0.70	+0.8
114,700	+		GFF3909	0.70	-0.1
114,701	-		GFF3909	0.70	+0.4
114,701	-		GFF3909	0.70	-0.2
114,701	-		GFF3909	0.70	-0.0
114,766	+		GFF3909	0.72	-0.2
114,766	+		GFF3909	0.72	+0.6
114,766	+		GFF3909	0.72	-0.5
114,766	+		GFF3909	0.72	-0.5
114,767	-		GFF3909	0.72	-1.3
114,787	+		GFF3909	0.73	-0.5
114,787	+		GFF3909	0.73	+0.9
114,787	+		GFF3909	0.73	-0.4
114,787	+		GFF3909	0.73	-2.0
114,787	+		GFF3909	0.73	-0.7
114,787	+		GFF3909	0.73	+1.1
114,787	+		GFF3909	0.73	-0.2
114,787	+		GFF3909	0.73	-0.7
114,787	+		GFF3909	0.73	-0.8
114,787	+		GFF3909	0.73	-0.4
114,788	-		GFF3909	0.73	-1.2
114,788	-		GFF3909	0.73	-1.1
114,788	-		GFF3909	0.73	+1.1
114,788	-		GFF3909	0.73	+1.0
114,788	-		GFF3909	0.73	-0.5
114,788	-		GFF3909	0.73	-1.1
114,788	-		GFF3909	0.73	+0.1
114,788	-		GFF3909	0.73	+0.2
114,788	-		GFF3909	0.73	+0.6
114,788	-		GFF3909	0.73	-0.9
114,788	-		GFF3909	0.73	-1.1
114,788	-		GFF3909	0.73	-0.5
114,788	-		GFF3909	0.73	+0.4
114,991	+		GFF3909	0.80	-0.8
114,991	+		GFF3909	0.80	+0.0
114,991	+		GFF3909	0.80	+2.1
114,991	+		GFF3909	0.80	-1.0
114,991	+		GFF3909	0.80	-0.2
114,992	-		GFF3909	0.80	-0.4
114,992	-		GFF3909	0.80	+0.1
115,144	+		GFF3909	0.85	+0.7
115,144	+		GFF3909	0.85	-0.4
115,144	+		GFF3909	0.85	-0.6
115,144	+		GFF3909	0.85	+1.0
115,145	-		GFF3909	0.85	+0.3
115,145	-		GFF3909	0.85	-0.2
115,162	+		GFF3909	0.86	+0.0
115,162	+		GFF3909	0.86	+0.6
115,162	+		GFF3909	0.86	-0.6
115,162	+		GFF3909	0.86	+0.8
115,162	+		GFF3909	0.86	-0.2
115,162	+		GFF3909	0.86	-0.4
115,163	-		GFF3909	0.86	-0.6
115,163	-		GFF3909	0.86	-0.9
115,163	-		GFF3909	0.86	+0.8
115,163	-		GFF3909	0.86	-0.9
115,163	-		GFF3909	0.86	-1.6
115,163	-		GFF3909	0.86	-0.1
115,163	-		GFF3909	0.86	-1.2
115,163	-		GFF3909	0.86	-1.1
115,163	-		GFF3909	0.86	-0.4
115,163	-		GFF3909	0.86	-0.3
115,163	-		GFF3909	0.86	-0.3
115,163	-		GFF3909	0.86	-0.5
115,163	-		GFF3909	0.86	-1.1
115,207	+		GFF3909	0.87	+0.7
115,207	+		GFF3909	0.87	-2.0
115,207	+		GFF3909	0.87	-1.5
115,207	+		GFF3909	0.87	-0.6
115,293	+				-0.9
115,294	-				-0.8
115,294	-				+0.1
115,516	+				-1.0
115,516	+				-0.9
115,516	+				-1.6
115,517	-				-1.3
115,517	-				-0.3
115,517	-				-0.1
115,517	-				-0.9
115,519	+				-1.1
115,519	+				-1.0
115,519	+				-0.7
115,519	+				+0.7
115,519	+				-0.9
115,519	+				-0.6
115,519	+				+1.5
115,520	-				-1.6
115,520	-				-0.8
115,520	-				+0.7
115,520	-				-0.2
115,520	-				-0.0
115,520	-				-0.6
115,520	-				+0.5
115,520	-				-0.4
115,520	-				-1.1
115,591	+				-0.2
115,592	-				-0.3
115,592	-				+0.6
115,592	-				+0.2
115,592	-				-1.2
115,592	-				-0.5
115,825	+		GFF3910	0.16	+0.3
115,825	+		GFF3910	0.16	-0.1
115,826	-		GFF3910	0.16	-0.5
115,903	+		GFF3910	0.21	+0.0
115,904	-		GFF3910	0.21	+0.7
116,047	+		GFF3910	0.31	+0.9
116,047	+		GFF3910	0.31	-0.4
116,047	+		GFF3910	0.31	-0.2
116,047	+		GFF3910	0.31	+0.0
116,047	+		GFF3910	0.31	-0.1
116,047	+		GFF3910	0.31	-0.4
116,048	-		GFF3910	0.31	+0.1
116,048	-		GFF3910	0.31	-0.0
116,048	-		GFF3910	0.31	+0.4
116,048	-		GFF3910	0.31	+1.3
116,048	-		GFF3910	0.31	-0.3
116,048	-		GFF3910	0.31	-0.4
116,254	+		GFF3910	0.45	+0.2
116,254	+		GFF3910	0.45	+0.6
116,254	+		GFF3910	0.45	+0.1
116,275	+		GFF3910	0.47	+0.1
116,275	+		GFF3910	0.47	-0.2
116,276	-		GFF3910	0.47	-1.3
116,276	-		GFF3910	0.47	-0.0
116,276	-		GFF3910	0.47	-1.1
116,276	-		GFF3910	0.47	-0.7
116,434	+		GFF3910	0.58	+0.9
116,434	+		GFF3910	0.58	-0.5
116,435	-		GFF3910	0.58	-0.3
116,435	-		GFF3910	0.58	-0.2
116,481	+		GFF3910	0.61	-0.1
116,581	+		GFF3910	0.68	+1.0
116,624	+		GFF3910	0.71	-0.3
116,624	+		GFF3910	0.71	-1.9
116,624	+		GFF3910	0.71	-0.3
116,624	+		GFF3910	0.71	-0.1
116,624	+		GFF3910	0.71	-0.3
116,625	-		GFF3910	0.71	-1.6
116,625	-		GFF3910	0.71	+1.0
116,625	-		GFF3910	0.71	+0.3
116,625	-		GFF3910	0.71	-0.6
116,625	-		GFF3910	0.71	+2.3
116,626	+		GFF3910	0.71	-0.9
116,626	+		GFF3910	0.71	+0.0
116,626	+		GFF3910	0.71	-0.1
116,626	+		GFF3910	0.71	-0.3
116,627	-		GFF3910	0.71	-0.3
116,627	-		GFF3910	0.71	-1.5
116,627	-		GFF3910	0.71	+0.0
116,794	+		GFF3910	0.82	-0.3
116,794	+		GFF3910	0.82	-1.1
116,794	+		GFF3910	0.82	+0.1
116,988	+				-2.0
117,101	-				-1.1
117,360	-		GFF3911	0.51	+0.4
117,473	+		GFF3911	0.75	+3.0
117,473	+		GFF3911	0.75	-0.9
117,473	+		GFF3911	0.75	-0.1
117,473	+		GFF3911	0.75	-0.6
117,474	-		GFF3911	0.76	-0.3
117,474	-		GFF3911	0.76	+0.1
117,474	-		GFF3911	0.76	-1.9
117,474	-		GFF3911	0.76	+0.1
117,597	+				-0.7
117,597	+				-0.7
117,597	+				-1.7
117,597	+				+0.5
117,597	+				+0.2
117,597	+				-0.8
117,597	+				-0.6
117,597	+				-0.9
117,597	+				-1.2
117,598	-				+0.4
117,598	-				-0.7
117,598	-				-1.5
117,598	-				-0.9
117,598	-				-0.3
117,598	-				+0.3
117,598	-				-0.5
117,598	-				-0.2
117,598	-				-0.3
117,598	-				+1.4
117,598	-				-1.3
117,598	-				+0.1
117,598	-				+0.3
117,598	-				-1.0
117,598	-				-0.2
117,598	-				-0.6
117,601	+				-0.4
117,601	+				+0.1
117,601	+				+0.1
117,611	+				-0.6
117,721	+				+0.0
117,721	+				+0.2
117,722	-				-0.4
117,722	-				+0.4
117,722	-				-1.0
117,722	-				-0.5
117,722	-				-0.9
117,815	+				-0.5
117,815	+				-0.2
117,815	+				-0.8
117,815	+				-0.5
117,815	+				-0.5
117,815	+				+0.1
117,815	+				-0.9
117,815	+				+0.3
117,815	+				-0.1
117,815	+				-0.5
117,815	+				-0.6
117,815	+				-0.3
117,815	+				+0.9
117,816	-				-1.7
117,816	-				-2.0
117,816	-				-0.0