Strain Fitness in Variovorax sp. SCN45 around GFF3667

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3666 and GFF3667 overlap by 4 nucleotidesGFF3667 and GFF3668 are separated by 19 nucleotidesGFF3668 and GFF3669 are separated by 149 nucleotides GFF3666 - Inner membrane protein YbiR, putative anion permease, at 166,941 to 168,104 GFF3666 GFF3667 - Uncharacterized MFS-type transporter, at 168,101 to 169,369 GFF3667 GFF3668 - hypothetical protein, at 169,389 to 170,174 GFF3668 GFF3669 - Two-component system response regulator protein, at 170,324 to 171,694 GFF3669 Position (kb) 168 169 170Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 167.131 kb on + strand, within GFF3666at 167.132 kb on - strand, within GFF3666at 167.197 kb on + strand, within GFF3666at 167.197 kb on + strand, within GFF3666at 167.197 kb on + strand, within GFF3666at 167.197 kb on + strand, within GFF3666at 167.198 kb on - strand, within GFF3666at 167.198 kb on - strand, within GFF3666at 167.198 kb on - strand, within GFF3666at 167.350 kb on + strand, within GFF3666at 167.350 kb on + strand, within GFF3666at 167.350 kb on + strand, within GFF3666at 167.350 kb on + strand, within GFF3666at 167.350 kb on + strand, within GFF3666at 167.351 kb on - strand, within GFF3666at 167.351 kb on - strand, within GFF3666at 167.351 kb on - strand, within GFF3666at 167.403 kb on + strand, within GFF3666at 167.404 kb on - strand, within GFF3666at 167.404 kb on - strand, within GFF3666at 167.608 kb on + strand, within GFF3666at 167.608 kb on + strand, within GFF3666at 167.608 kb on + strand, within GFF3666at 167.608 kb on + strand, within GFF3666at 167.608 kb on + strand, within GFF3666at 167.608 kb on + strand, within GFF3666at 167.608 kb on + strand, within GFF3666at 167.609 kb on - strand, within GFF3666at 167.609 kb on - strand, within GFF3666at 167.609 kb on - strand, within GFF3666at 167.609 kb on - strand, within GFF3666at 167.609 kb on - strand, within GFF3666at 167.609 kb on - strand, within GFF3666at 168.459 kb on + strand, within GFF3667at 168.459 kb on + strand, within GFF3667at 168.459 kb on + strand, within GFF3667at 168.459 kb on + strand, within GFF3667at 168.459 kb on + strand, within GFF3667at 168.459 kb on + strand, within GFF3667at 168.460 kb on - strand, within GFF3667at 168.460 kb on - strand, within GFF3667at 168.460 kb on - strand, within GFF3667at 168.460 kb on - strand, within GFF3667at 168.460 kb on - strand, within GFF3667at 168.460 kb on - strand, within GFF3667at 168.717 kb on + strand, within GFF3667at 168.718 kb on - strand, within GFF3667at 168.718 kb on - strand, within GFF3667at 168.718 kb on - strand, within GFF3667at 168.718 kb on - strand, within GFF3667at 168.718 kb on - strand, within GFF3667at 168.858 kb on + strand, within GFF3667at 169.071 kb on + strand, within GFF3667at 169.071 kb on + strand, within GFF3667at 169.072 kb on - strand, within GFF3667at 169.633 kb on + strand, within GFF3668at 169.633 kb on + strand, within GFF3668at 169.633 kb on + strand, within GFF3668at 169.633 kb on + strand, within GFF3668at 169.634 kb on - strand, within GFF3668at 169.634 kb on - strand, within GFF3668at 169.634 kb on - strand, within GFF3668at 169.634 kb on - strand, within GFF3668at 169.634 kb on - strand, within GFF3668at 169.634 kb on - strand, within GFF3668at 169.634 kb on - strand, within GFF3668at 169.714 kb on + strand, within GFF3668at 169.714 kb on + strand, within GFF3668at 169.714 kb on + strand, within GFF3668at 169.714 kb on + strand, within GFF3668at 169.714 kb on + strand, within GFF3668at 169.714 kb on + strand, within GFF3668at 169.714 kb on + strand, within GFF3668at 169.714 kb on + strand, within GFF3668at 169.715 kb on - strand, within GFF3668at 169.715 kb on - strand, within GFF3668at 169.715 kb on - strand, within GFF3668at 169.715 kb on - strand, within GFF3668at 169.715 kb on - strand, within GFF3668at 169.715 kb on - strand, within GFF3668at 169.715 kb on - strand, within GFF3668at 169.715 kb on - strand, within GFF3668at 169.715 kb on - strand, within GFF3668at 170.337 kb on + strandat 170.338 kb on - strandat 170.338 kb on - strandat 170.355 kb on + strandat 170.356 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
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167,131 + GFF3666 0.16 -0.6
167,132 - GFF3666 0.16 -0.1
167,197 + GFF3666 0.22 +0.3
167,197 + GFF3666 0.22 -0.8
167,197 + GFF3666 0.22 +0.3
167,197 + GFF3666 0.22 +1.9
167,198 - GFF3666 0.22 -0.8
167,198 - GFF3666 0.22 +0.7
167,198 - GFF3666 0.22 -0.2
167,350 + GFF3666 0.35 +0.2
167,350 + GFF3666 0.35 -0.1
167,350 + GFF3666 0.35 +0.2
167,350 + GFF3666 0.35 -1.1
167,350 + GFF3666 0.35 +0.5
167,351 - GFF3666 0.35 -0.9
167,351 - GFF3666 0.35 -0.3
167,351 - GFF3666 0.35 -0.1
167,403 + GFF3666 0.40 +0.2
167,404 - GFF3666 0.40 -2.9
167,404 - GFF3666 0.40 -0.0
167,608 + GFF3666 0.57 -0.0
167,608 + GFF3666 0.57 -0.3
167,608 + GFF3666 0.57 -1.7
167,608 + GFF3666 0.57 +0.6
167,608 + GFF3666 0.57 -0.9
167,608 + GFF3666 0.57 -0.5
167,608 + GFF3666 0.57 -1.3
167,609 - GFF3666 0.57 -0.6
167,609 - GFF3666 0.57 -0.5
167,609 - GFF3666 0.57 -1.1
167,609 - GFF3666 0.57 -0.7
167,609 - GFF3666 0.57 -0.7
167,609 - GFF3666 0.57 -0.3
168,459 + GFF3667 0.28 -0.3
168,459 + GFF3667 0.28 -0.7
168,459 + GFF3667 0.28 -1.0
168,459 + GFF3667 0.28 +0.4
168,459 + GFF3667 0.28 -0.1
168,459 + GFF3667 0.28 -0.0
168,460 - GFF3667 0.28 -0.2
168,460 - GFF3667 0.28 -0.5
168,460 - GFF3667 0.28 -0.8
168,460 - GFF3667 0.28 +0.4
168,460 - GFF3667 0.28 -1.1
168,460 - GFF3667 0.28 +0.7
168,717 + GFF3667 0.49 +0.0
168,718 - GFF3667 0.49 -1.6
168,718 - GFF3667 0.49 +0.1
168,718 - GFF3667 0.49 +0.3
168,718 - GFF3667 0.49 -1.0
168,718 - GFF3667 0.49 +0.0
168,858 + GFF3667 0.60 -1.1
169,071 + GFF3667 0.76 +0.4
169,071 + GFF3667 0.76 -0.6
169,072 - GFF3667 0.77 -1.8
169,633 + GFF3668 0.31 +1.7
169,633 + GFF3668 0.31 -0.9
169,633 + GFF3668 0.31 +1.1
169,633 + GFF3668 0.31 +0.9
169,634 - GFF3668 0.31 -0.2
169,634 - GFF3668 0.31 -0.9
169,634 - GFF3668 0.31 +1.3
169,634 - GFF3668 0.31 -1.5
169,634 - GFF3668 0.31 -0.7
169,634 - GFF3668 0.31 -0.1
169,634 - GFF3668 0.31 +0.1
169,714 + GFF3668 0.41 +0.8
169,714 + GFF3668 0.41 -1.8
169,714 + GFF3668 0.41 -0.6
169,714 + GFF3668 0.41 -1.5
169,714 + GFF3668 0.41 -0.1
169,714 + GFF3668 0.41 -0.2
169,714 + GFF3668 0.41 -1.5
169,714 + GFF3668 0.41 +0.9
169,715 - GFF3668 0.41 +0.5
169,715 - GFF3668 0.41 -0.0
169,715 - GFF3668 0.41 -0.1
169,715 - GFF3668 0.41 -0.5
169,715 - GFF3668 0.41 -1.8
169,715 - GFF3668 0.41 -0.3
169,715 - GFF3668 0.41 -0.9
169,715 - GFF3668 0.41 -0.1
169,715 - GFF3668 0.41 -0.5
170,337 + +0.4
170,338 - -1.1
170,338 - -0.1
170,355 + -0.9
170,356 - -0.7

Or see this region's nucleotide sequence