Strain Fitness in Variovorax sp. SCN45 around GFF3536

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3534 and GFF3535 are separated by 4 nucleotidesGFF3535 and GFF3536 are separated by 186 nucleotidesGFF3536 and GFF3537 are separated by 100 nucleotides GFF3534 - hypothetical protein, at 40,847 to 41,185 GFF3534 GFF3535 - Aquaporin Z, at 41,190 to 41,897 GFF3535 GFF3536 - Alcohol dehydrogenase (EC 1.1.1.1), at 42,084 to 43,094 GFF3536 GFF3537 - Transcriptional regulator, LysR family, at 43,195 to 44,115 GFF3537 Position (kb) 42 43 44Strain fitness (log2 ratio) -2 -1 0 1 2at 41.102 kb on + strand, within GFF3534at 41.225 kb on - strandat 41.293 kb on + strand, within GFF3535at 41.294 kb on - strand, within GFF3535at 41.294 kb on - strand, within GFF3535at 41.294 kb on - strand, within GFF3535at 41.294 kb on - strand, within GFF3535at 41.475 kb on + strand, within GFF3535at 41.475 kb on + strand, within GFF3535at 41.475 kb on + strand, within GFF3535at 41.475 kb on + strand, within GFF3535at 41.475 kb on + strand, within GFF3535at 41.475 kb on + strand, within GFF3535at 41.476 kb on - strand, within GFF3535at 41.476 kb on - strand, within GFF3535at 41.506 kb on + strand, within GFF3535at 41.506 kb on + strand, within GFF3535at 41.506 kb on + strand, within GFF3535at 41.506 kb on + strand, within GFF3535at 41.506 kb on + strand, within GFF3535at 41.506 kb on + strand, within GFF3535at 41.506 kb on + strand, within GFF3535at 41.507 kb on - strand, within GFF3535at 41.507 kb on - strand, within GFF3535at 41.507 kb on - strand, within GFF3535at 41.507 kb on - strand, within GFF3535at 41.507 kb on - strand, within GFF3535at 41.587 kb on + strand, within GFF3535at 41.587 kb on + strand, within GFF3535at 41.587 kb on + strand, within GFF3535at 41.588 kb on - strand, within GFF3535at 41.588 kb on - strand, within GFF3535at 41.588 kb on - strand, within GFF3535at 41.635 kb on + strand, within GFF3535at 41.636 kb on - strand, within GFF3535at 41.731 kb on + strand, within GFF3535at 41.731 kb on + strand, within GFF3535at 41.731 kb on + strand, within GFF3535at 41.852 kb on + strandat 41.959 kb on + strandat 41.959 kb on + strandat 41.959 kb on + strandat 41.960 kb on - strandat 41.960 kb on - strandat 41.960 kb on - strandat 42.160 kb on + strandat 42.161 kb on - strandat 42.161 kb on - strandat 42.280 kb on + strand, within GFF3536at 42.280 kb on + strand, within GFF3536at 42.280 kb on + strand, within GFF3536at 42.280 kb on + strand, within GFF3536at 42.280 kb on + strand, within GFF3536at 42.280 kb on + strand, within GFF3536at 42.281 kb on - strand, within GFF3536at 42.281 kb on - strand, within GFF3536at 42.281 kb on - strand, within GFF3536at 42.281 kb on - strand, within GFF3536at 42.281 kb on - strand, within GFF3536at 42.281 kb on - strand, within GFF3536at 42.281 kb on - strand, within GFF3536at 42.958 kb on + strand, within GFF3536at 42.959 kb on - strand, within GFF3536at 42.959 kb on - strand, within GFF3536at 42.959 kb on - strand, within GFF3536at 42.959 kb on - strand, within GFF3536at 43.131 kb on + strandat 43.173 kb on + strandat 43.390 kb on + strand, within GFF3537at 43.390 kb on + strand, within GFF3537at 43.390 kb on + strand, within GFF3537at 43.391 kb on - strand, within GFF3537at 43.391 kb on - strand, within GFF3537at 43.393 kb on + strand, within GFF3537at 43.393 kb on + strand, within GFF3537at 43.394 kb on - strand, within GFF3537at 43.394 kb on - strand, within GFF3537at 43.394 kb on - strand, within GFF3537at 43.394 kb on - strand, within GFF3537at 43.711 kb on + strand, within GFF3537at 43.711 kb on + strand, within GFF3537at 43.711 kb on + strand, within GFF3537at 43.711 kb on + strand, within GFF3537at 43.712 kb on - strand, within GFF3537at 43.712 kb on - strand, within GFF3537at 43.777 kb on + strand, within GFF3537at 43.778 kb on - strand, within GFF3537at 43.778 kb on - strand, within GFF3537at 43.778 kb on - strand, within GFF3537at 43.796 kb on + strand, within GFF3537

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
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41,102 + GFF3534 0.75 -0.1
41,225 - +0.5
41,293 + GFF3535 0.15 -0.1
41,294 - GFF3535 0.15 -0.9
41,294 - GFF3535 0.15 -0.7
41,294 - GFF3535 0.15 -0.2
41,294 - GFF3535 0.15 +1.5
41,475 + GFF3535 0.40 +1.1
41,475 + GFF3535 0.40 -0.4
41,475 + GFF3535 0.40 +0.5
41,475 + GFF3535 0.40 -0.1
41,475 + GFF3535 0.40 -0.4
41,475 + GFF3535 0.40 -0.4
41,476 - GFF3535 0.40 -0.2
41,476 - GFF3535 0.40 +0.9
41,506 + GFF3535 0.45 -1.6
41,506 + GFF3535 0.45 +0.1
41,506 + GFF3535 0.45 -0.9
41,506 + GFF3535 0.45 +1.2
41,506 + GFF3535 0.45 +1.2
41,506 + GFF3535 0.45 +0.0
41,506 + GFF3535 0.45 -0.3
41,507 - GFF3535 0.45 -0.8
41,507 - GFF3535 0.45 -1.0
41,507 - GFF3535 0.45 -0.7
41,507 - GFF3535 0.45 -0.9
41,507 - GFF3535 0.45 -0.3
41,587 + GFF3535 0.56 -0.5
41,587 + GFF3535 0.56 +0.1
41,587 + GFF3535 0.56 -1.2
41,588 - GFF3535 0.56 +0.3
41,588 - GFF3535 0.56 -0.1
41,588 - GFF3535 0.56 -0.1
41,635 + GFF3535 0.63 +0.1
41,636 - GFF3535 0.63 -0.4
41,731 + GFF3535 0.76 -0.4
41,731 + GFF3535 0.76 +0.1
41,731 + GFF3535 0.76 -0.2
41,852 + +1.7
41,959 + -0.9
41,959 + -0.8
41,959 + -0.6
41,960 - -0.6
41,960 - -1.9
41,960 - +0.4
42,160 + +0.0
42,161 - -0.3
42,161 - -0.9
42,280 + GFF3536 0.19 -0.4
42,280 + GFF3536 0.19 -0.1
42,280 + GFF3536 0.19 +0.3
42,280 + GFF3536 0.19 +1.3
42,280 + GFF3536 0.19 +1.2
42,280 + GFF3536 0.19 -0.5
42,281 - GFF3536 0.19 +1.5
42,281 - GFF3536 0.19 +0.3
42,281 - GFF3536 0.19 +0.3
42,281 - GFF3536 0.19 -0.2
42,281 - GFF3536 0.19 +0.5
42,281 - GFF3536 0.19 +0.2
42,281 - GFF3536 0.19 -0.3
42,958 + GFF3536 0.86 -0.8
42,959 - GFF3536 0.87 -0.1
42,959 - GFF3536 0.87 +0.9
42,959 - GFF3536 0.87 +0.6
42,959 - GFF3536 0.87 -0.6
43,131 + -0.2
43,173 + -0.7
43,390 + GFF3537 0.21 +0.8
43,390 + GFF3537 0.21 +0.5
43,390 + GFF3537 0.21 +0.1
43,391 - GFF3537 0.21 +0.3
43,391 - GFF3537 0.21 +0.0
43,393 + GFF3537 0.21 +1.9
43,393 + GFF3537 0.21 -0.3
43,394 - GFF3537 0.22 +0.2
43,394 - GFF3537 0.22 -0.1
43,394 - GFF3537 0.22 -1.4
43,394 - GFF3537 0.22 -0.5
43,711 + GFF3537 0.56 -0.2
43,711 + GFF3537 0.56 -0.3
43,711 + GFF3537 0.56 +0.2
43,711 + GFF3537 0.56 +0.5
43,712 - GFF3537 0.56 +1.5
43,712 - GFF3537 0.56 -0.8
43,777 + GFF3537 0.63 -0.7
43,778 - GFF3537 0.63 -1.0
43,778 - GFF3537 0.63 -1.5
43,778 - GFF3537 0.63 -0.8
43,796 + GFF3537 0.65 +0.5

Or see this region's nucleotide sequence