Strain Fitness in Variovorax sp. SCN45 around GFF3185

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
626,664	+		GFF3184	0.57	-0.2
626,664	+		GFF3184	0.57	+1.7
626,664	+		GFF3184	0.57	-0.4
626,665	-		GFF3184	0.57	-0.5
626,665	-		GFF3184	0.57	-1.0
626,694	+		GFF3184	0.58	-2.0
626,694	+		GFF3184	0.58	-0.3
626,694	+		GFF3184	0.58	-1.1
626,695	-		GFF3184	0.58	-1.1
626,793	+		GFF3184	0.63	-0.8
626,794	-		GFF3184	0.63	-0.2
626,796	+		GFF3184	0.63	+1.7
626,797	-		GFF3184	0.64	+0.8
626,797	-		GFF3184	0.64	-0.0
627,163	+		GFF3184	0.82	-0.6
627,163	+		GFF3184	0.82	-1.6
627,163	+		GFF3184	0.82	-0.9
627,164	-		GFF3184	0.82	-0.3
627,164	-		GFF3184	0.82	-0.6
627,164	-		GFF3184	0.82	+0.3
627,164	-		GFF3184	0.82	-0.6
627,164	-		GFF3184	0.82	+0.4
627,164	-		GFF3184	0.82	+0.6
627,510	+				-1.0
627,511	-				-0.1
627,511	-				-1.0
627,511	-				+1.5
627,734	+		GFF3185	0.19	+0.1
627,734	+		GFF3185	0.19	+1.7
627,735	-		GFF3185	0.19	-1.7
627,735	-		GFF3185	0.19	+1.3
627,735	-		GFF3185	0.19	-1.5
627,735	-		GFF3185	0.19	+1.7
627,851	+		GFF3185	0.33	-0.7
627,852	-		GFF3185	0.34	-0.7
628,010	+		GFF3185	0.53	+0.1
628,157	+		GFF3185	0.71	-0.1
628,157	+		GFF3185	0.71	+0.3
628,281	-		GFF3185	0.86	-0.0
628,306	+		GFF3185	0.89	+1.0
628,313	+		GFF3185	0.90	+1.3
628,314	-				+0.1
628,375	+				-0.1
628,375	+				-1.1
628,375	+				-0.1
628,376	-				-0.5
628,376	-				+0.6
628,396	+				-0.1
628,397	-				-0.7
628,452	-				-1.0
628,452	-				+0.2