Strain Fitness in Variovorax sp. SCN45 around GFF3085

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
514,145	+				+0.1
514,145	+				-0.1
514,146	-				-0.9
514,230	+		GFF3082	0.25	-0.3
514,230	+		GFF3082	0.25	-0.0
514,230	+		GFF3082	0.25	+0.4
514,230	+		GFF3082	0.25	-1.2
514,266	+		GFF3082	0.33	+0.2
514,267	-		GFF3082	0.33	+0.3
514,267	-		GFF3082	0.33	-0.6
514,267	-		GFF3082	0.33	-1.2
514,267	-		GFF3082	0.33	+0.8
514,537	+				-0.4
514,538	-				-0.3
514,561	+				-0.7
514,561	+				-0.5
514,561	+				+0.0
514,576	+				-0.9
514,576	+				-0.8
514,576	+				-0.9
514,576	+				-0.5
514,577	-				+0.0
514,577	-				-0.4
514,585	+				-1.5
514,585	+				+0.9
514,585	+				-0.0
514,585	+				-0.1
514,585	+				-1.3
514,586	-				+2.3
514,586	-				-0.6
514,586	-				-0.8
514,606	+				+1.1
514,780	+		GFF3084	0.63	-0.4
514,780	+		GFF3084	0.63	-0.4
514,780	+		GFF3084	0.63	-2.0
514,780	+		GFF3084	0.63	-0.4
514,780	+		GFF3084	0.63	-0.4
514,780	+		GFF3084	0.63	-0.3
514,781	-		GFF3084	0.64	+0.0
514,781	-		GFF3084	0.64	+0.5
514,781	-		GFF3084	0.64	-1.2
514,781	-		GFF3084	0.64	+0.0
514,781	-		GFF3084	0.64	-1.1
514,781	-		GFF3084	0.64	-0.2
515,098	+				+1.4
515,098	+				-1.2
515,272	+		GFF3085	0.53	-0.6
515,272	+		GFF3085	0.53	-0.9
515,272	+		GFF3085	0.53	-1.3
515,465	+				-1.5
515,465	+				-0.1
515,466	-				-0.6
515,466	-				-1.5
515,466	-				-1.2
515,479	+				-0.0
515,480	-				-0.9
515,491	+				+0.6
515,491	+				+0.2
515,492	-				-0.2
515,492	-				-0.3
515,492	-				-0.9
515,654	+				-0.3
515,654	+				-0.0
515,655	-				-0.9
515,655	-				-0.5
515,655	-				-1.8
516,073	+				+0.1
516,074	-				+1.0
516,074	-				+0.2
516,074	-				-0.5
516,074	-				+0.4
516,074	-				-0.3
516,074	-				+0.1
516,076	+				+0.8
516,076	+				-0.4
516,077	-				+0.1
516,077	-				-1.2
516,077	-				-0.6
516,099	+				+1.7
516,119	+				-1.9
516,119	+				-0.0
516,145	-				+1.7
516,164	+				-0.3
516,164	+				-0.5
516,164	+				-1.0
516,164	+				-0.0
516,165	-				-1.7
516,165	-				-1.7
516,165	-				+0.2
516,165	-				-0.3
516,165	-				-0.7
516,168	+				+0.7
516,168	+				+1.0
516,168	+				-0.1
516,168	+				+0.3
516,168	+				-1.5
516,168	+				+0.2
516,168	+				-0.3
516,168	+				-0.9
516,169	-				+0.2
516,169	-				-1.6
516,169	-				-0.2
516,169	-				-0.3
516,169	-				-0.4
516,181	+				+0.7
516,181	+				-0.3
516,181	+				-0.2
516,181	+				+1.1
516,181	+				-0.3
516,181	+				-0.2
516,181	+				+0.1
516,181	+				+0.0
516,181	+				+1.1
516,181	+				+1.3
516,182	-				+0.2
516,182	-				-0.5
516,255	+				-0.6
516,295	+				-2.5
516,295	+				-0.3
516,295	+				+0.5
516,295	+				+0.7
516,296	-				+0.4
516,364	+				-1.0
516,364	+				+0.4
516,364	+				-0.5
516,364	+				-0.3
516,364	+				-1.0
516,364	+				-1.9
516,364	+				-0.2
516,364	+				-0.0
516,365	-				+0.0
516,365	-				+0.0
516,365	-				-0.4
516,365	-				-0.8
516,365	-				+0.7
516,392	-				-0.5
516,392	-				+0.0