Strain Fitness in Variovorax sp. SCN45 around GFF2952

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2950 and GFF2951 overlap by 4 nucleotidesGFF2951 and GFF2952 overlap by 32 nucleotidesGFF2952 and GFF2953 are separated by 20 nucleotides GFF2950 - Arsenite/antimonite:H+ antiporter ArsB, at 373,627 to 374,919 GFF2950 GFF2951 - Arsenate reductase (EC 1.20.4.1) glutaredoxin-coupled, glutaredoxin-like family, at 374,916 to 375,350 GFF2951 GFF2952 - Arsenic resistance protein ArsH, at 375,319 to 376,053 GFF2952 GFF2953 - Transcriptional regulator, AraC family, at 376,074 to 377,039 GFF2953 Position (kb) 375 376 377Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 374.494 kb on + strand, within GFF2950at 374.494 kb on + strand, within GFF2950at 374.494 kb on + strand, within GFF2950at 374.494 kb on + strand, within GFF2950at 374.494 kb on + strand, within GFF2950at 374.494 kb on + strand, within GFF2950at 374.494 kb on + strand, within GFF2950at 374.494 kb on + strand, within GFF2950at 374.494 kb on + strand, within GFF2950at 374.494 kb on + strand, within GFF2950at 374.494 kb on + strand, within GFF2950at 374.494 kb on + strand, within GFF2950at 374.495 kb on - strand, within GFF2950at 374.495 kb on - strand, within GFF2950at 374.495 kb on - strand, within GFF2950at 374.495 kb on - strand, within GFF2950at 374.495 kb on - strand, within GFF2950at 374.495 kb on - strand, within GFF2950at 374.506 kb on + strand, within GFF2950at 374.506 kb on + strand, within GFF2950at 374.713 kb on + strand, within GFF2950at 374.713 kb on + strand, within GFF2950at 374.713 kb on + strand, within GFF2950at 374.713 kb on + strand, within GFF2950at 374.713 kb on + strand, within GFF2950at 374.713 kb on + strand, within GFF2950at 374.830 kb on + strandat 374.830 kb on + strandat 374.831 kb on - strandat 374.831 kb on - strandat 374.937 kb on + strandat 374.937 kb on + strandat 374.937 kb on + strandat 374.938 kb on - strandat 374.938 kb on - strandat 374.938 kb on - strandat 375.018 kb on + strand, within GFF2951at 375.018 kb on + strand, within GFF2951at 375.018 kb on + strand, within GFF2951at 375.114 kb on + strand, within GFF2951at 375.115 kb on - strand, within GFF2951at 375.448 kb on + strand, within GFF2952at 375.448 kb on + strand, within GFF2952at 375.448 kb on + strand, within GFF2952at 375.449 kb on - strand, within GFF2952at 375.472 kb on + strand, within GFF2952at 375.472 kb on + strand, within GFF2952at 375.473 kb on - strand, within GFF2952at 375.473 kb on - strand, within GFF2952at 375.473 kb on - strand, within GFF2952at 375.538 kb on + strand, within GFF2952at 375.538 kb on + strand, within GFF2952at 375.538 kb on + strand, within GFF2952at 375.539 kb on - strand, within GFF2952at 375.539 kb on - strand, within GFF2952at 375.539 kb on - strand, within GFF2952at 375.539 kb on - strand, within GFF2952at 375.539 kb on - strand, within GFF2952at 375.539 kb on - strand, within GFF2952at 375.539 kb on - strand, within GFF2952at 375.905 kb on - strand, within GFF2952at 375.905 kb on - strand, within GFF2952at 375.907 kb on + strand, within GFF2952at 375.907 kb on + strand, within GFF2952at 375.908 kb on - strand, within GFF2952at 375.908 kb on - strand, within GFF2952at 375.976 kb on + strand, within GFF2952at 375.976 kb on + strand, within GFF2952at 376.792 kb on + strand, within GFF2953at 376.792 kb on + strand, within GFF2953at 376.792 kb on + strand, within GFF2953at 376.792 kb on + strand, within GFF2953at 376.792 kb on + strand, within GFF2953at 376.792 kb on + strand, within GFF2953at 376.792 kb on + strand, within GFF2953at 376.792 kb on + strand, within GFF2953at 376.792 kb on + strand, within GFF2953at 376.792 kb on + strand, within GFF2953at 376.793 kb on - strand, within GFF2953at 376.793 kb on - strand, within GFF2953at 376.793 kb on - strand, within GFF2953at 376.793 kb on - strand, within GFF2953at 376.793 kb on - strand, within GFF2953at 376.798 kb on + strand, within GFF2953at 376.798 kb on + strand, within GFF2953at 376.798 kb on + strand, within GFF2953at 376.799 kb on - strand, within GFF2953at 376.799 kb on - strand, within GFF2953at 376.799 kb on - strand, within GFF2953at 376.799 kb on - strand, within GFF2953at 376.799 kb on - strand, within GFF2953at 376.799 kb on - strand, within GFF2953at 376.799 kb on - strand, within GFF2953at 376.799 kb on - strand, within GFF2953at 376.978 kb on + strandat 376.979 kb on - strandat 377.051 kb on + strandat 377.051 kb on + strandat 377.051 kb on + strandat 377.051 kb on + strandat 377.051 kb on + strandat 377.052 kb on - strandat 377.052 kb on - strandat 377.052 kb on - strandat 377.052 kb on - strandat 377.052 kb on - strandat 377.052 kb on - strandat 377.052 kb on - strandat 377.052 kb on - strandat 377.052 kb on - strandat 377.053 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
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374,494 + GFF2950 0.67 +1.0
374,494 + GFF2950 0.67 +0.8
374,494 + GFF2950 0.67 +2.0
374,494 + GFF2950 0.67 -0.6
374,494 + GFF2950 0.67 +0.1
374,494 + GFF2950 0.67 -1.2
374,494 + GFF2950 0.67 -0.7
374,494 + GFF2950 0.67 -1.3
374,494 + GFF2950 0.67 +0.7
374,494 + GFF2950 0.67 +0.5
374,494 + GFF2950 0.67 -0.2
374,494 + GFF2950 0.67 +0.1
374,495 - GFF2950 0.67 -1.3
374,495 - GFF2950 0.67 -0.6
374,495 - GFF2950 0.67 +1.2
374,495 - GFF2950 0.67 -1.1
374,495 - GFF2950 0.67 +2.7
374,495 - GFF2950 0.67 -0.6
374,506 + GFF2950 0.68 +1.7
374,506 + GFF2950 0.68 +0.2
374,713 + GFF2950 0.84 -0.5
374,713 + GFF2950 0.84 +0.1
374,713 + GFF2950 0.84 +0.8
374,713 + GFF2950 0.84 +0.2
374,713 + GFF2950 0.84 -0.8
374,713 + GFF2950 0.84 +0.0
374,830 + +0.1
374,830 + -0.8
374,831 - +1.0
374,831 - +0.2
374,937 + -0.4
374,937 + -0.4
374,937 + +0.9
374,938 - -0.3
374,938 - +1.5
374,938 - +0.1
375,018 + GFF2951 0.23 +0.1
375,018 + GFF2951 0.23 -0.3
375,018 + GFF2951 0.23 -1.0
375,114 + GFF2951 0.46 -1.0
375,115 - GFF2951 0.46 +0.5
375,448 + GFF2952 0.18 -1.5
375,448 + GFF2952 0.18 -2.5
375,448 + GFF2952 0.18 -1.1
375,449 - GFF2952 0.18 -0.2
375,472 + GFF2952 0.21 -0.1
375,472 + GFF2952 0.21 +0.7
375,473 - GFF2952 0.21 -0.6
375,473 - GFF2952 0.21 +0.5
375,473 - GFF2952 0.21 -1.0
375,538 + GFF2952 0.30 -0.6
375,538 + GFF2952 0.30 +1.0
375,538 + GFF2952 0.30 -0.1
375,539 - GFF2952 0.30 -0.3
375,539 - GFF2952 0.30 +0.1
375,539 - GFF2952 0.30 +1.4
375,539 - GFF2952 0.30 -1.6
375,539 - GFF2952 0.30 +0.6
375,539 - GFF2952 0.30 -0.4
375,539 - GFF2952 0.30 -1.4
375,905 - GFF2952 0.80 -0.1
375,905 - GFF2952 0.80 -0.8
375,907 + GFF2952 0.80 -0.5
375,907 + GFF2952 0.80 -0.6
375,908 - GFF2952 0.80 -0.6
375,908 - GFF2952 0.80 -0.6
375,976 + GFF2952 0.89 +0.1
375,976 + GFF2952 0.89 -1.5
376,792 + GFF2953 0.74 -0.4
376,792 + GFF2953 0.74 -0.6
376,792 + GFF2953 0.74 -1.5
376,792 + GFF2953 0.74 +0.1
376,792 + GFF2953 0.74 +0.5
376,792 + GFF2953 0.74 -3.2
376,792 + GFF2953 0.74 +0.2
376,792 + GFF2953 0.74 -0.7
376,792 + GFF2953 0.74 -2.7
376,792 + GFF2953 0.74 -0.3
376,793 - GFF2953 0.74 -0.6
376,793 - GFF2953 0.74 -1.3
376,793 - GFF2953 0.74 -0.3
376,793 - GFF2953 0.74 +0.5
376,793 - GFF2953 0.74 -1.5
376,798 + GFF2953 0.75 +0.9
376,798 + GFF2953 0.75 -0.4
376,798 + GFF2953 0.75 -0.4
376,799 - GFF2953 0.75 -2.6
376,799 - GFF2953 0.75 -1.3
376,799 - GFF2953 0.75 +0.0
376,799 - GFF2953 0.75 +0.4
376,799 - GFF2953 0.75 -1.0
376,799 - GFF2953 0.75 -0.5
376,799 - GFF2953 0.75 -0.9
376,799 - GFF2953 0.75 -0.9
376,978 + +0.4
376,979 - -0.3
377,051 + +0.1
377,051 + -0.6
377,051 + -0.1
377,051 + -0.1
377,051 + +0.4
377,052 - -0.1
377,052 - -0.3
377,052 - -1.6
377,052 - -0.4
377,052 - -1.1
377,052 - -1.4
377,052 - +0.2
377,052 - -1.1
377,052 - -0.6
377,053 - +0.7

Or see this region's nucleotide sequence